Joseph M. Schaeffer

Dynamics and Control of Biomolecules: Research Venues and Opportunities Tutorial Session at the 2007 IEEE Conference on Decision and Control

William B. Dunbar, Eric Klavins, Noah A. Wilson, 2007 .

On the biophysics and kinetics of toehold-mediated DNA strand displacement

Joseph M. Schaeffer, Niranjan Srinivas, J. Doye, 2013, Nucleic acids research.

Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates

Mark W. Schmidt, Mark Schmidt, Erik Winfree, 2017, DNA.

Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems

Erik Winfree, Joseph Berleant, Frits Dannenberg, 2018, Journal of the Royal Society Interface.

Supplementary material from "Automated sequence-level analysis of kinetics and thermodynamics for domain-level DNA strand-displacement systems"

Joseph M. Schaeffer, E. Winfree, C. Berlind, 2018 .

Dynamics and control of biomolecules: Research venues and opportunities

William B. Dunbar, Eric Klavins, Noah A. Wilson, 2007, 2007 46th IEEE Conference on Decision and Control.

Thermodynamic Analysis of Interacting Nucleic Acid Strands

Erik Winfree, Niles A. Pierce, Robert M. Dirks, 2007, SIAM Rev..

Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands

Erik Winfree, Chris Thachuk, Joseph M. Schaeffer, 2015, DNA.

The Multistrand Simulator: Stochastic Simulation of the Kinetics of Multiple Interacting DNA Strands

Joseph Malcolm Schaeffer, Joseph M. Schaeffer, 2012 .