Irmtraud M. Meyer

发表

Irmtraud M. Meyer, 2004 .

Bacteriophages: Emerging Applications in Medicine, Food, and Biotechnology

Aidan Coffey, Irmtraud M. Meyer, Muhammad Sohail, 2020 .

Transat—A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures

Irmtraud M. Meyer, Nicholas J. P. Wiebe, I. Meyer, 2010, PLoS Comput. Biol..

e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation

Irmtraud M. Meyer, Daniel Lai, D. Lai, 2014, Nucleic Acids Res..

Deciphering the Universe of RNA Structures and trans RNA–RNA Interactions of Transcriptomes In Vivo: From Experimental Protocols to Computational Analyses

Irmtraud M. Meyer, Stefan R. Stefanov, I. Meyer, 2018 .

A practical guide to the art of RNA gene prediction

Irmtraud M. Meyer, I. Meyer, 2007, Briefings Bioinform..

Efficient algorithms for training the parameters of hidden Markov models using stochastic expectation maximization (EM) training and Viterbi training

Irmtraud M. Meyer, Tin Yin Lam, 2010, Algorithms for Molecular Biology.

Comparative ab initio prediction of gene structures using pair HMMs

Richard Durbin, Irmtraud M. Meyer, R. Durbin, 2002, Bioinform..

Hidden Markov Model (HMM, Hidden Semi-Markov Models, Profile Hidden Markov Models, Training of Hidden Markov Models, Dynamic Programming, Pair Hidden Markov Models)

Irmtraud M. Meyer, 2014 .

A linear memory algorithm for Baum-Welch training

István Miklós, Irmtraud M. Meyer, István Miklós, 2005, BMC Bioinformatics.

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

István Miklós, Irmtraud M. Meyer, I. Meyer, 2005, Nucleic acids research.

HMMConverter 1.0: a toolbox for hidden Markov models

Irmtraud M. Meyer, Tin Yin Lam, I. Meyer, 2009, Nucleic acids research.

R-chie: a web server and R package for visualizing RNA secondary structures

Daniel Lai, Irmtraud M. Meyer, I. Meyer, 2012, Nucleic acids research.

Transient RNA structure features are evolutionarily conserved and can be computationally predicted

Irmtraud M. Meyer, I. Meyer, A. Steif, 2013, Nucleic acids research.

CoFold: an RNA secondary structure prediction method that takes co-transcriptional folding into account

Irmtraud M. Meyer, I. Meyer, Jeff R. Proctor, 2013, Nucleic acids research.

Applications of High-Throughput Sequencing

Irmtraud M. Meyer, I. Meyer, M. Marra, 2012 .

An evolutionary model for protein-coding regions with conserved RNA structure.

Irmtraud M. Meyer, J. S. Pedersen, J. Hein, 2004, Molecular biology and evolution.

Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing

Alborz Mazloomian, Irmtraud M. Meyer, Irmtraud M Meyer, 2015, RNA biology.

The clonal and mutational evolution spectrum of primary triple-negative breast cancers

Irmtraud M. Meyer, A. Bashashati, I. Birol, 2012, Nature.

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs

Irmtraud M. Meyer, Chinmay J. Shukla, Manolis Kellis, 2018, Development.

Frequent mutation of histone modifying genes in non-Hodgkin lymphoma

Steven J. M. Jones, Shaun D. Jackman, Ryan D. Morin, 2011, Nature.

CYCLeR—a novel tool for the full isoform assembly and quantification of circRNAs

Irmtraud M. Meyer, I. Meyer, Stefan R. Stefanov, 2021, bioRxiv.

R-chie: a web server and R package for visualizing cis and trans RNA–RNA, RNA–DNA and DNA–DNA interactions

Irmtraud M. Meyer, I. Meyer, Mohamed Mounir, 2020, Nucleic acids research.

The International Virus Bioinformatics Meeting 2020

Irmtraud M. Meyer, I. Meyer, N. Beerenwinkel, 2020, Viruses.

Transcriptional dynamics of microRNAs and their targets during Drosophila neurogenesis

Irmtraud M. Meyer, I. Meyer, R. Zinzen, 2019, RNA biology.

A cross-species comparison of X-chromosome inactivation in Eutheria.

Irmtraud M. Meyer, Carolyn J. Brown, I. Meyer, 2007, Genomics.

Gene structure conservation aids similarity based gene prediction.

Irmtraud M. Meyer, R. Durbin, I. Meyer, 2004, Nucleic acids research.

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis

Irmtraud M. Meyer, I. Meyer, D. Staiger, 2008, Nucleic acids research.

A comprehensive comparison of general RNA–RNA interaction prediction methods

Daniel Lai, Irmtraud M. Meyer, Irmtraud M Meyer, 2015, Nucleic acids research.

On the importance of cotranscriptional RNA structure formation

Irmtraud M. Meyer, I. Meyer, Daniel Lai, 2013, RNA.

Predicting novel RNA-RNA interactions.

Irmtraud M. Meyer, Irmtraud M Meyer, I. Meyer, 2008, Current opinion in structural biology.

Women in the European Virus Bioinformatics Center

Irmtraud M. Meyer, I. Meyer, K. Metzner, 2022, Viruses.

The genome of the simian and human malaria parasite Plasmodium knowlesi

Karsten M. Borgwardt, Thomas M. Keane, Irmtraud M. Meyer, 2008, Nature.

e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features

Irmtraud M. Meyer, V. Tsybulskyi, Egor Semenchenko, 2023, Nucleic Acids Res..

Title A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs . Running title lncRNAs in Drosophila neurogenesis

Irmtraud M. Meyer, Chinmay J. Shukla, Manolis Kellis, 2018 .

Moments of the Boltzmann distribution for RNA secondary structures

Irmtraud M. Meyer, I. Meyer, I. Miklós, 2005, Bulletin of mathematical biology.

The dynamic proteome of influenza A virus infection identifies M segment splicing as a host range determinant

Irmtraud M. Meyer, I. Meyer, M. Selbach, 2018, Nature Communications.

ShapeSorter: a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence

Irmtraud M. Meyer, I. Meyer, V. Tsybulskyi, 2022, Nucleic acids research.

In silico methods for co-transcriptional RNA secondary structure prediction and for investigating alternative RNA structure expression.

Irmtraud M. Meyer, Irmtraud M Meyer, I. Meyer, 2017, Methods.

Four RNA families with functional transient structures

Irmtraud M. Meyer, I. Meyer, J. Zhu, 2015, RNA biology.

CYCL E R––a novel tool for the full isoform assembly and quantiﬁcation of circRNAs

Irmtraud M. Meyer, Stefan R. Stefanov, 2023 .

A comparative method for finding and folding RNA secondary structures within protein-coding regions.

Irmtraud M. Meyer, J. S. Pedersen, J. Hein, 2004, Nucleic acids research.

CoBold: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation in vivo

Irmtraud M. Meyer, I. Meyer, A. Martín, 2020, Nucleic acids research.

BIQ: A method for searching circular RNAs in transcriptome databases by indexing backsplice junctions

Irmtraud M. Meyer, I. Meyer, P. Menzel, 2019, bioRxiv.

Investigating the concept of accessibility for predicting novel RNA-RNA interactions

Irmtraud M. Meyer, I. Meyer, S. Reißer, 2021, bioRxiv.

SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework

István Miklós, Irmtraud M. Meyer, Irmtraud M Meyer, 2007, PLoS Comput. Biol..

Simulfold: Simultaneously Inferring Rna Structures including Pseudoknots, Alignments, and Trees Using a Bayesian Mcmc Framework

Irmtraud M. Meyer, Istvá N Mikló S, 2022 .

CoFold: thermodynamic RNA structure prediction with a kinetic twist

Irmtraud M. Meyer, I. Meyer, J. R. Proctor, 2012, 1207.6013.

The hok mRNA family

Irmtraud M. Meyer, Irmtraud M Meyer, I. Meyer, 2012, RNA biology.