Kelly M. Thayer

发表

Hidden Markov models from simulations on DNA

Kelly M. Thayer, D. L. Beveridget, 2002 .

Chemical principles additive model aligns low consensus DNA targets of p53 tumor suppressor protein

Kelly M. Thayer, In Sub M. Han, K. Thayer, 2017, Comput. Biol. Chem..

Analyses of the effects of all ubiquitin point mutants on yeast growth rate.

Kelly M. Thayer, Benjamin P. Roscoe, D. Bolon, 2013, Journal of molecular biology.

Hidden Markov models from molecular dynamics simulations on DNA

Kelly M. Thayer, D. Beveridge, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Dependence of prevalence of contiguous pathways in proteins on structural complexity

Kelly M. Thayer, Jesse C Galganov, Avram J Stein, 2017, PloS one.

Molecular Dynamics-Markov State Model of Protein Ligand Binding and Allostery in CRIB-PDZ: Conformational Selection and Induced Fit.

Kelly M. Thayer, D. Beveridge, Bharat Lakhani, 2017, The journal of physical chemistry. B.

Spectral analysis of molecular dynamics simulations on PDZ: MD sectors

Kelly M. Thayer, D. Beveridge, Emily Black, 2019, Journal of biomolecular structure & dynamics.

Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control

Kelly M. Thayer, P. K. Ajikumar, Kristala L. J. Prather, 2010, Proceedings of the National Academy of Sciences.

Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.

Heinz Sklenar, Roman Osman, Richard Lavery, 2005, Biophysical journal.

Molecular Basis for Differential Patterns of Drug Resistance in Influenza N1 and N2 Neuraminidase.

Kelly M. Thayer, C. Schiffer, D. Bolon, 2016, Journal of chemical theory and computation.

Structure prediction and analysis of neuraminidase sequence variants

Kelly M. Thayer, 2016, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

Homologs of the Tumor Suppressor Protein p53: A Bioinformatics Study for Drug Design.

Kelly M. Thayer, C. Cárcamo, K. Thayer, 2020, MOJ proteomics & bioinformatics.

Molecular Basis for Drug Resistance in HIV-1 Protease

Celia A. Schiffer, Kelly M. Thayer, Akbar Ali, 2010, Viruses.

Diversity of T Cell Epitopes in Plasmodium falciparum Circumsporozoite Protein Likely Due to Protein-Protein Interactions

Kelly M. Thayer, J. Bailey, F. Martinson, 2013, PloS one.

p53 R175H hydrophobic patch and H‐bond reorganization observed by MD simulation

Kelly M. Thayer, T. Quinn, K. Thayer, 2016, Biopolymers.

Energetic Landscape of MDM2-p53 Interactions by Computational Mutagenesis of the MDM2-p53 Interaction

Kelly M. Thayer, George A. Beyer, K. Thayer, 2016, PloS one.

Computational Construction of A P53 Tetrameric Structure

Kelly M. Thayer, K. Thayer, C. Carpenter, 2016 .

Molecular Dynamics of Mismatch Detection - How MutS Uses Indirect Readout to Find Errors in DNA.

Kelly M. Thayer, D. Beveridge, M. Hingorani, 2023, Biophysical journal.

Molecular dynamics simulations of DNA curvature and flexibility: Helix phasing and premelting

Kelly M. Thayer, D. Beveridge, D. Beveridge, 2004, Biopolymers.

Ion motions in molecular dynamics simulations on DNA.

Kelly M. Thayer, D. Beveridge, Sergei Y Ponomarev, 2004, Proceedings of the National Academy of Sciences of the United States of America.

GCN sensitive protein translation in yeast

Kelly M. Thayer, M. Weir, K. Voelkel-Meiman, 2020, bioRxiv.

Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps.

Heinz Sklenar, Roman Osman, Richard Lavery, 2004, Biophysical journal.

FROM PINUS ELLIOTTII PLANTATION TO PINUS PALUSTRIS ECOSYSTEM : THE ROLE OF HERBICIDE IN LONGLEAF PINE RESTORATION

Kelly M. Thayer, S. Jose, D. Hagan, 2008 .

Allosteric Signaling in PDZ Energetic Networks: Embedding Error Analysis

Kelly M. Thayer, D. Beveridge, Benjamin S Cowan, 2023, The journal of physical chemistry. B.

Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair Protein

Kelly M. Thayer, Bharat Lakhani, Manju M Hingorani, 2017, The journal of physical chemistry. B.

Variable Regions of p53 Isoforms Allosterically Hard Code DNA Interaction

Kelly M. Thayer, K. Thayer, I. Armour-Garb, 2022, The journal of physical chemistry. B.

Molecular Basis for Di ff erential Patterns of Drug Resistance in In fl uenza N 1 and N 2 Neuraminidase

Kelly M. Thayer, D. Bolon, Ayşegül Özen, 2016 .

Toward a Universal Structural and Energetic Model for Prokaryotic Promoters.

Kelly M. Thayer, M. Bansal, W. Olson, 2018, Biophysical journal.

Towards a universal structural and energetic model for prokaryotic promoters

Kelly M. Thayer, M. Bansal, W. Olson, 2018, bioRxiv.