Wipapat Kladwang

发表

RNA design rules from a massive open laboratory

Minjae Lee, Sungroh Yoon, Adrien Treuille, 2014, Proceedings of the National Academy of Sciences.

Automated design of highly diverse riboswitches

Rhiju Das, William J. Greenleaf, Wipapat Kladwang, 2019, bioRxiv.

Computational Design of Asymmetric Three-dimensional RNA Structures and Machines

Daniel Herschlag, Rhiju Das, Xuesong Shi, 2017, bioRxiv.

Can biopolymer structures be sampled enumeratively? Atomic-accuracy RNA loop modeling by a stepwise ansatz

Rhiju Das, Parin Sripakdeevong, Wipapat Kladwang, 2011, 1104.5278.

Blind prediction of noncanonical RNA structure at atomic accuracy

Luc Jaeger, Rhiju Das, Wipapat Kladwang, 2017, Science Advances.

RNA secondary structure packages evaluated and improved by high-throughput experiments

Rhiju Das, Wipapat Kladwang, Hannah K. Wayment-Steele, 2020, bioRxiv.

Correction: Consistent global structures of complex RNA states through multidimensional chemical mapping

Siqi Tian, Rhiju Das, Fang-Chieh Chou, 2015, eLife.

Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocol.

Rhiju Das, Wipapat Kladwang, Matthew G Seetin, 2013, Methods in molecular biology.

HiTRACE: high-throughput robust analysis for capillary electrophoresis

Seunghyun Park, Sungroh Yoon, Jinkyu Kim, 2011, Bioinform..

Correcting a SHAPE-directed RNA structure by a mutate-map-rescue approach

Pablo Cordero, Siqi Tian, Rhiju Das, 2014, bioRxiv.

Crowdsourced RNA design discovers diverse, reversible, efficient, self-contained molecular sensors

Rhiju Das, Fernando Portela, Wipapat Kladwang, 2019, bioRxiv.

Predictive models of RNA degradation through dual crowdsourcing

Michele Tinti, Youhan Lee, Andrew M. Watkins, 2021, ArXiv.

Ultraviolet Shadowing of RNA Can Cause Significant Chemical Damage in Seconds

Rhiju Das, Wipapat Kladwang, Justine Hum, 2012, Scientific Reports.

Ribosolve: Rapid determination of three-dimensional RNA-only structures

Andrew M. Watkins, Wah Chiu, Kaiming Zhang, 2019, bioRxiv.

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures

Andrew M. Watkins, Wah Chiu, Rhiju Das, 2020, Nature Methods.

High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states.

Siqi Tian, Rhiju Das, Wipapat Kladwang, 2014, RNA.

Automated Design of Diverse Stand-Alone Riboswitches

Rhiju Das, Wipapat Kladwang, Michelle J. Wu, 2019, ACS synthetic biology.

Prospects for recurrent neural network models to learn RNA biophysics from high-throughput data

Rhiju Das, Wipapat Kladwang, Michelle J. Wu, 2017, bioRxiv.

MOHCA-seq: RNA 3D models from single multiplexed proximity-mapping experiments

Siqi Tian, Rhiju Das, Fang-Chieh Chou, 2014, bioRxiv.

RNA structure inference through chemical mapping after accidental or intentional mutations

Rhiju Das, Wipapat Kladwang, Rhiju Das, 2017, Proceedings of the National Academy of Sciences.

De novo 3D models of SARS-CoV-2 RNA elements and small-molecule-binding RNAs to aid drug discovery

Andrew M. Watkins, Mats Rynge, Rhiju Das, 2020 .

High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states

Siqi Tian, Rhiju Das, Wipapat Kladwang, 2014, bioRxiv.

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

Feng Ding, Jian Wang, Janusz M Bujnicki, 2015, RNA.

Automated RNA structure prediction uncovers a kink-turn linker in double glycine riboswitches.

Rhiju Das, Fang-Chieh Chou, Wipapat Kladwang, 2012, Journal of the American Chemical Society.

Anomalous reverse transcription through chemical modifications in polyadenosine stretches

Rhiju Das, Wipapat Kladwang, Rhiju Das, 2020, bioRxiv.

Two-dimensional chemical mapping for non-coding RNAs

Rhiju Das, Wipapat Kladwang, Pablo Cordero, 2011, 1104.0979.