Claude Thermes

发表

A Multi-agent System Simulating Human Splice Site Recognition

Joël Quinqueton, Frédérique Lisacek, Yves D'Aubenton-Carafa, 1999, Comput. Chem..

Large replication skew domains delimit GC-poor gene deserts in human

Françoise Argoul, Alain Arneodo, Benjamin Audit, 2014, Comput. Biol. Chem..

Replication Fork Polarity Gradients Revealed by Megabase-Sized U-Shaped Replication Timing Domains in Human Cell Lines

Benjamin Audit, Alain Arneodo, Yves D'Aubenton-Carafa, 2012, PLoS Comput. Biol..

Fractals and wavelets: What can we learn on transcription and replication from wavelet-based multifractal analysis of DNA sequences?

Alain Arneodo, Yves D'Aubenton-Carafa, Maxime Huvet, 2009 .

Relating mammalian replication program to large-scale chromatin folding

Alain Arneodo, Hanna Julienne, Yves D'Aubenton-Carafa, 2013, BCB.

CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data

Yves D'Aubenton-Carafa, Claude Thermes, Delphine Naquin, 2014, BMC Bioinformatics.

Large-scale analysis of the human genome: From DNA sequence analysis to the modeling of replication in higher eukaryotes

Alain Arneodo, Yves D'Aubenton-Carafa, Benjamin Audit, 2006, 2006 14th European Signal Processing Conference.

Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome

Alain Arneodo, Yves D'Aubenton-Carafa, Benjamin Audit, 2011, PLoS Comput. Biol..

Wavelet based fractal analysis of DNA sequences

Emmanuel Bacry, Alain Arneodo, Jean-François Muzy, 1996 .

Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes.

Laurent Farinelli, Alain Arneodo, Maxime Huvet, 2010, Genome research.

Wavelet-based method to disentangle transcription- and replication-associated strand asymmetries in mammalian genomes

Alain Arneodo, Benjamin Audit, Samuel Nicolay, 2010 .

Evolution of Hox gene clusters in gnathostomes: insights from a survey of a shark (Scyliorhinus canicula) transcriptome.

Patrick Wincker, Claude Thermes, Corinne Da Silva, 2010, Molecular biology and evolution.

From the chromatin interaction network to the organization of the human genome into replication N/U-domains

Alain Arneodo, Hanna Julienne, Benjamin Audit, 2014 .

A novel strategy of transcription regulation by intragenic nucleosome ordering.

Alain Arneodo, Leonor Palmeira, Benjamin Audit, 2010, Genome research.

Benchmarking RNA secondary structure comparison algorithms

Cedric Chauve, Daniel Gautheret, Michel Termier, 2008 .

Long-Range Correlations in Genomic DNA

Alain Arneodo, Benjamin Audit, Cédric Vaillant, 2001 .

Megabase replication domains along the human genome: relation to chromatin structure and genome organisation.

Alain Arneodo, Benjamin Audit, Claude Thermes, 2013, Sub-cellular biochemistry.

Open chromatin encoded in DNA sequence is the signature of ‘master’ replication origins in human cells

Alain Arneodo, Benjamin Audit, Cédric Vaillant, 2009, Nucleic acids research.

Wavelet Analysis of DNA Bending Profiles reveals Structural Constraints on the Evolution of Genomic Sequences

Benjamin Audit, Cédric Vaillant, Claude Thermes, 2004, Journal of biological physics.

Multi-scale coding of genomic information: From DNA sequence to genome structure and function

Françoise Argoul, Alain Arneodo, Benjamin Audit, 2011 .

Replication-associated mutational asymmetry in the human genome.

Alain Arneodo, Maxime Huvet, Benjamin Audit, 2011, Molecular biology and evolution.

3D chromatin conformation correlates with replication timing and is conserved in resting cells

Alain Arneodo, Benjamin Audit, Claude Thermes, 2012, Nucleic acids research.

Long-range correlations between DNA bending sites: relation to the structure and dynamics of nucleosomes.

Alain Arneodo, Benjamin Audit, Claude Thermes, 2002, Journal of molecular biology.

The Dogfish Scyliorhinus canicula: A Reference in Jawed Vertebrates.

Patrick Wincker, Yves D'Aubenton-Carafa, Claude Thermes, 2008, CSH protocols.

Characterization of 43 Non-Protein-Coding mRNA Genes in Arabidopsis, Including the MIR162a-Derived Transcripts1[W]

Vincent Lefort, Claude Thermes, Yves d'Aubenton-Carafa, 2006, Plant Physiology.

DNA in chromatin: from genome-wide sequence analysis to the modeling of replication in mammals.

Benjamin Audit, Samuel Nicolay, Cédric Vaillant, 2007 .

The Third Revolution in Sequencing Technology.

Claude Thermes, Delphine Naquin, Yan Jaszczyszyn, 2018, Trends in genetics : TIG.

Human gene organization driven by the coordination of replication and transcription.

Alain Arneodo, Maxime Huvet, Benjamin Audit, 2007, Genome research.

Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm

Alain Arneodo, Hanna Julienne, Benjamin Audit, 2012, Nature Protocols.

DNA physical properties determine nucleosome occupancy from yeast to fly

Vincent Miele, Cédric Vaillant, Claude Thermes, 2008, Nucleic acids research.

Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins.

Alain Arneodo, Benjamin Audit, Samuel Nicolay, 2005, Proceedings of the National Academy of Sciences of the United States of America.

What can we learn with wavelets about DNA sequences

Emmanuel Bacry, Alain Arneodo, Jean-François Muzy, 1998 .

Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes.

Alain Arneodo, Claude Thermes, Marie Touchon, 2004, Nucleic acids research.