David A. Bader

发表

David A. Bader, Suchindra Bhandarkar, Laxmikant V. Kalé, 2006, Parallel Processing for Scientific Computing.

Ranking in Dynamic Graphs Using Exponential Centrality

David A. Bader, Eisha Nathan, James P. Fairbanks, 2017, COMPLEX NETWORKS.

Understanding the design trade-offs among current multicore systems for numerical computations

David A. Bader, Richard W. Vuduc, Seunghwa Kang, 2009, 2009 IEEE International Symposium on Parallel & Distributed Processing.

Faster FAST: multicore acceleration of streaming financial data

David A. Bader, Fabrizio Petrini, Virat Agarwal, 2009, Computer Science - Research and Development.

Designing irregular parallel algorithms with mutual exclusion and lock-free protocols

David A. Bader, Guojing Cong, Guojing Cong, 2006, J. Parallel Distributed Comput..

Parallel Methods for Verifying the Consistency of Weakly-Ordered Architectures

David A. Bader, Michael Garland, Adam McLaughlin, 2015, 2015 International Conference on Parallel Architecture and Compilation (PACT).

Proceedings of the 14th Meeting on Algorithm Engineering & Experiments, ALENEX 2012, The Westin Miyako, Kyoto, Japan, January 16, 2012

David A. Bader, Dort Mutzel, Dort Mutzel, 2012, ALENEX.

Exemplar or matching: modeling DCJ problems with unequal content genome data

David A. Bader, Jijun Tang, Zhaoming Yin, 2015, Journal of Combinatorial Optimization.

Dynamic Load Balancing in Distributed Systems in the Presence of Delays: A Regeneration-Theory Approach

David A. Bader, Sagar Dhakal, Majeed M. Hayat, 2007, IEEE Transactions on Parallel and Distributed Systems.

Ieee Transactions on Parallel and Distributed Systems Graphct: Multithreaded Algorithms for Massive Graph Analysis

David A. Bader, E. Jason Riedy, David Ediger, 2022 .

SWARM: A Parallel Programming Framework for Multicore Processors

David A. Bader, Guojing Cong, 2007, 2007 IEEE International Parallel and Distributed Processing Symposium.

Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation

David A. Bader, David Ediger, Karl Jiang, 2009, 2009 International Conference on Parallel Processing.

QoS-Aware and Fault-Tolerant Replica Placement

David A. Bader, Zhihui Du, Jingkun Hu, 2020, ICA3PP.

A Fast Algorithm for Streaming Betweenness Centrality

David A. Bader, Oded Green, Robert McColl, 2012, 2012 International Conference on Privacy, Security, Risk and Trust and 2012 International Confernece on Social Computing.

Design of Multithreaded Algorithms for Combinatorial Problems

David A. Bader, Guojing Cong, John Feo, 2007, Handbook of Parallel Computing.

Hybrid Programming With SIMPLE

David A. Bader, Guojing Cong, Guojing Cong, 2011, Encyclopedia of Parallel Computing.

Numerically approximating centrality for graph ranking guarantees

David A. Bader, Eisha Nathan, Van Emden Henson, 2018, J. Comput. Sci..

Large scale complex network analysis using the hybrid combination of a MapReduce cluster and a highly multithreaded system

David A. Bader, Seunghwa Kang, Seunghwa Kang, 2010, 2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW).

Simulating Individual-Based Models of Epidemics in Hierarchical Networks

Peter M. A. Sloot, David A. Bader, Rick Quax, 2009, ICCS.

Introduction to HiCOMB 2018

Srinivas Aluru, David A. Bader, Paul Medvedev, 2018, 2018 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

Massive Social Network Analysis: Mining Twitter for Social Good

David A. Bader, E. Jason Riedy, David Ediger, 2010, 2010 39th International Conference on Parallel Processing.

Analysis of streaming social networks and graphs on multicore architectures

David A. Bader, Timothy G. Mattson, E. Jason Riedy, 2012, 2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

FFTC: Fastest Fourier Transform for the IBM Cell Broadband Engine

David A. Bader, Virat Agarwal, 2007, HiPC.

A novel FDTD application featuring OpenMP-MPI hybrid parallelization

David A. Bader, Ihab F El-Kady, Mehmet F. Su, 2004 .

Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture

David A. Bader, Jonathan W. Berry, Kamesh Madduri, 2007, 2007 IEEE International Parallel and Distributed Processing Symposium.

Designing and implementing a heuristic cross-architecture combination for graph traversal

David A. Bader, Guangwen Yang, Yang You, 2017, J. Parallel Distributed Comput..

A New, Architectural Paradigm for High-performance Computing

David A. Bader, 1999, Scalable Comput. Pract. Exp..

Fast and Adaptive List Intersections on the GPU

David A. Bader, James Fox, Oded Green, 2018, 2018 IEEE High Performance extreme Computing Conference (HPEC).

Graph Partitioning and Graph Clustering

David A. Bader, Peter Sanders, Dorothea Wagner, 2013 .

Petascale Computing for Large-Scale Graph Problems

David A. Bader, 2007, PPAM.

Guest Editor's Introduction: Special Issue on High-Performance Computing with Accelerators

David A. Bader, David R. Kaeli, Volodymyr V. Kindratenko, 2011, IEEE Trans. Parallel Distributed Syst..

Practical parallel algorithms for dynamic data redistribution, median finding, and selection

David A. Bader, Joseph JáJá, J. JáJá, 1995, Proceedings of International Conference on Parallel Processing.

High Performance Computing - HiPC 2005, 12th International Conference, Goa, India, December 18-21, 2005, Proceedings

Viktor K. Prasanna, David A. Bader, Manish Parashar, 2005, HiPC.

Analyzing Massive Social Networks Using Multicore and Multithreaded Architectures

David A. Bader, 2010, Facing the Multicore-Challenge.

A Brief Study of Open Source Graph Databases pdf

David A. Bader, David Ediger, Robert McColl, 2013, ArXiv.

Behavioral clusters in dynamic graphs

David A. Bader, James P. Fairbanks, Haesun Park, 2015, Parallel Comput..

Grid Computing Workshop 2005 Organizing Committee

Remzi H. Arpaci-Dusseau, Mario Lauria, Henri Casanova, 2005 .

Editorial from the Editor-in-Chief

David A. Bader, 2019, TOPC.

Approximating Betweenness Centrality

David A. Bader, Shiva Kintali, Milena Mihail, 2007, WAW.

Spanning Tree, Minimum Weight

David A. Bader, Guojing Cong, Guojing Cong, 2011, Encyclopedia of Parallel Computing.

Graph Partitioning and Graph Clustering, 10th DIMACS Implementation Challenge Workshop, Georgia Institute of Technology, Atlanta, GA, USA, February 13-14, 2012. Proceedings

David A. Bader, Dorothea Wagner, Henning Meyerhenke, 2013, Graph Partitioning and Graph Clustering.

High-performance algorithm engineering for parallel computation

David A. Bader, Peter Sanders, Bernard M. E. Moret, 2002 .

Fast Execution of Simultaneous Breadth-First Searches on Sparse Graphs

David A. Bader, Adam McLaughlin, Adam McLaughlin, 2015, 2015 IEEE 21st International Conference on Parallel and Distributed Systems (ICPADS).

Workshop Introduction

Srinivas Aluru, David A. Bader, S. Aluru, 2002, IPDPS.

Designing Hybrid Architectures for Massive-Scale Graph Analysis

David A. Bader, David Ediger, 2013, 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum.

Petascale Computing for Large-Scale Graph Problems

David A. Bader, 2007, 2007 IEEE International Parallel and Distributed Processing Symposium.

Streaming Graph Sampling with Size Restrictions

David A. Bader, Anita Zakrzewska, 2017, ASONAM.

IPDPS 2004 ORGANIZATION

Viktor K. Prasanna, David A. Bader, Charles C. Weems, 2004 .

Workshop co-chairs

Luca Benini, Vivek Sarkar, Brian Vinter, 2009, 2009 International Workshop Terahertz and Mid Infrared Radiation: Basic Research and Practical Applications.

High Performance Computing HiPC 2005: 12th International Conference, Goa, India, December 18-21, 2005, Proceedings (Lecture Notes in Computer Science)

Viktor K. Prasanna, David A. Bader, Manish Parashar, 2006 .

On the Design and Analysis of Irregular Algorithms on the Cell Processor: A Case Study of List Ranking

David A. Bader, Virat Agarwal, Kamesh Madduri, 2007, 2007 IEEE International Parallel and Distributed Processing Symposium.

GPU Accelerated Anomaly Detection of Large Scale Light Curves

David A. Bader, Zhihui Du, Chao Wu, 2020, 2020 IEEE High Performance Extreme Computing Conference (HPEC).

Detecting insider threats in a real corporate database of computer usage activity

Thomas G. Dietterich, Danai Koutra, Christos Faloutsos, 2013, KDD.

High Performance Algorithm Engineering for Large-scale Problems

David A. Bader, 2008, Encyclopedia of Algorithms.

An Improved Randomized Selection Algorithm With an Experimental Study (Extended Abstract)

David A. Bader, 1999 .

State of the Journal

David A. Bader, 2015, IEEE Trans. Computers.

Fast shared-memory algorithms for computing the minimum spanning forest of sparse graphs

David A. Bader, Guojing Cong, Guojing Cong, 2004, 18th International Parallel and Distributed Processing Symposium, 2004. Proceedings..

Petascale Computing: Algorithms and Applications

David A. Bader, 2007 .

An Experimental Comparison of Parallel Algorithms for Ear Decomposition of Graphs using Two Leading Paradigms

David A. Bader, A. K. Illendula, 2000 .

Lecture on Progress toward Petascale Applications in Bioinformatics and Computational Biology

David A. Bader, Craig A. Stewart, Malinda Lingwall, 2007, 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

Tutorial A: Design and Analysis of High Performance Clusters

David A. Bader, Stephen L. Scott, Arthur B. Maccabe, 2000, CLUSTER.

Measuring the Sensitivity of Graph Metrics to Missing Data

David A. Bader, Anita Zakrzewska, A. Zakrzewska, 2013, PPAM.

On the architectural requirements for efficient execution of graph algorithms

David A. Bader, Guojing Cong, John Feo, 2005, 2005 International Conference on Parallel Processing (ICPP'05).

A New Parallel Algorithm for Planarity Testing

David A. Bader, Sukanya Sreshta, Sukanya Sreshta, 2003 .

GRAPPA runs in record time

David A. Bader, Bernard M. E. Moret, B. Moret, 2000 .

Fundamental Questions in the Analysis of Large Graphs

Christos Faloutsos, David A. Bader, John R. Gilbert, 2011, Graph Algorithms in the Language of Linear Algebra.

IPDPS 2005 Organization

Paul G. Spirakis, Arnold L. Rosenberg, Serge Chaumette, 2005 .

Guest Editor's Introduction: Special issue on high-performance computational biology

Srinivas Aluru, David A. Bader, 2003, J. Parallel Distributed Comput..

Local Community Detection in Dynamic Graphs Using Personalized Centrality

David A. Bader, Eisha Nathan, E. Jason Riedy, 2017, Algorithms.

WEC: Improving Durability of SSD Cache Drives by Caching Write-Efficient Data

Xiao Qin, David A. Bader, Zhihui Du, 2015, IEEE Transactions on Computers.

A new deterministic parallel sorting algorithm with an experimental evaluation

David A. Bader, Joseph JáJá, David R. Helman, 1998, JEAL.

Graph partitioning and graph clustering : 10th DIMACS Implementation Challenge Workshop, February 13-14, 2012, Georgia Institute of Technology, Atlanta, GA

David A. Bader, 2013 .

A Partition-Merge Based Cache-Conscious Parallel Sorting Algorithm for CMP with Shared Cache

David A. Bader, Zhihui Du, Song Hao, 2009, 2009 International Conference on Parallel Processing.

HCW 2012 Keynote Talk: Analyzing massive data using heterogeneous computing

David A. Bader, 2012, IPDPS Workshops.

Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study

Larry S. Davis, David A. Bader, Joseph JáJá, 2004, The Journal of Supercomputing.

Design and analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster

David A. Bader, Arthur B. Maccabe, Patricia A. Kovatch, 1999, ICWC 99. IEEE Computer Society International Workshop on Cluster Computing.

Massive streaming data analytics: A case study with clustering coefficients

David A. Bader, E. Jason Riedy, David Ediger, 2010, 2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW).

An Efficient LP Rounding Scheme for Replica Placement

David A. Bader, Zhihui Du, Sen Zhang, 2020, 2020 IEEE High Performance Extreme Computing Conference (HPEC).

Investigating Graph Algorithms in the BSP Model on the Cray XMT

David A. Bader, David Ediger, David Ediger, 2013, 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum.

Parallel algorithms for image histogramming and connected components with an experimental study (extended abstract)

David A. Bader, Joseph JáJá, J. JáJá, 1995, PPOPP '95.

Modeling the Power Variability of Core Speed Scaling on Homogeneous Multicore Systems

David A. Bader, Richard W. Vuduc, Rong Ge, 2017, Sci. Program..

A Practical Parallel Algorithm for Cycle Detection in Partitioned Digraphs

David A. Bader, 1999 .

GPUMemSort: A High Performance Graphics Co-processors Sorting Algorithm for Large Scale In-Memory Data

David A. Bader, Zhihui Du, Quan Yang, 2011 .

High performance bioinformatics

Johan Montagnat, David A. Bader, Mohammed J. Zaki, 2004 .

Spectral partitioning with blends of eigenvectors pdf

David A. Bader, James P. Fairbanks, Geoffrey Sanders, 2015, J. Complex Networks.

Efficient Parallel Graph Algorithms for Multicore and Multiprocessors

David A. Bader, Guojing Cong, Guojing Cong, 2007, Handbook of Parallel Computing.

GABB Introduction

David A. Bader, John R. Gilbert, Jeremy Kepner, 2014, 2014 IEEE International Parallel & Distributed Processing Symposium Workshops.

ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony

David A. Bader, Mi Yan, Vaddadi P. Chandu, 2006, 2006 International Conference on Parallel Processing (ICPP'06).

Proceedings of the 12th international conference on High Performance Computing

Viktor K. Prasanna, David A. Bader, Manish Parashar, 2005 .

Designing a Heuristic Cross-Architecture Combination for Breadth-First Search

David A. Bader, Maryam Mehri Dehnavi, Yang You, 2014, 2014 43rd International Conference on Parallel Processing.

A dynamic algorithm for local community detection in graphs

David A. Bader, Anita Zakrzewska, A. Zakrzewska, 2015, 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM).

Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine

David A. Bader, Seunghwa Kang, 2008, 2008 37th International Conference on Parallel Processing.

HIGH-PERFORMANCE ALGORITHMS AND APPLICATIONS FOR SMP CLUSTERS

David A. Bader, 1999 .

PASQUAL: Parallel Techniques for Next Generation Genome Sequence Assembly

David A. Bader, Xing Liu, Henning Meyerhenke, 2013, IEEE Transactions on Parallel and Distributed Systems.

Design and implementation of parallel PageRank on multicore platforms

Viktor K. Prasanna, Shreyas G. Singapura, David A. Bader, 2017, 2017 IEEE High Performance Extreme Computing Conference (HPEC).

On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis

David A. Bader, Virat Agarwal, Aparna Chandramowlishwaran, 2008, 2008 37th International Conference on Parallel Processing.

HPC node performance and energy modeling with the co-location of applications

David A. Bader, Anthony A. Maciejewski, Howard Jay Siegel, 2016, The Journal of Supercomputing.

A Framework for Measuring Supercomputer Productivity

David A. Bader, Marc Snir, M. Snir, 2004, Int. J. High Perform. Comput. Appl..

Financial modeling on the cell broadband engine

David A. Bader, Virat Agarwal, Lurng-Kuo Liu, 2008, 2008 IEEE International Symposium on Parallel and Distributed Processing.

A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic

David A. Bader, Vipin Sachdeva, Vipin Sachdeva, 2006, PDCS.

Sorting Signed Permutations by Reversal (Reversal Distance)

David A. Bader, 2008, Encyclopedia of Algorithms.

Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors

David A. Bader, Kamesh Madduri, Kamesh Madduri, 2005, HiPC.

Message from the Program Chair

David A. Bader, Daniel S. Katz, Yuanyuan Yang, 2006, ICPP.

Scalable Katz Ranking Computation in Large Static and Dynamic Graphs pdf

David A. Bader, Henning Meyerhenke, Oded Green, 2018, ESA.

High-Performance Algorithm Engineering for Computational Phylogenetics

David A. Bader, Tandy J. Warnow, Bernard M. E. Moret, 2001, The Journal of Supercomputing.

A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents

David A. Bader, Jijun Tang, Zhaoming Yin, 2014, COCOON.

High-Performance Phylogenetic Inference

David A. Bader, Kamesh Madduri, Kamesh Madduri, 2019, Bioinformatics and Phylogenetics.

Engineering Algorithms for Computational Biology

David A. Bader, 2008, Encyclopedia of Algorithms.

Generalized block shift network for clusters

David A. Bader, Xiaola Lin, Paul Y. S. Cheung, 2002 .

Topic 17: High Performance Bioinformatics

Johan Montagnat, David A. Bader, Mohammed J. Zaki, 2004, Euro-Par.

The 17th Heterogeneity in Computing Workshop (HCW 2008)

Dana Petcu, Francine Berman, Franck Cappello, 2008, 2008 IEEE International Symposium on Parallel and Distributed Processing.

Mathematical foundations of the GraphBLAS

Franz Franchetti, David A. Bader, John D. Owens, 2016, 2016 IEEE High Performance Extreme Computing Conference (HPEC).

Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes

David A. Bader, Jijun Tang, Zhaoming Yin, 2013, ICCS.

Combinatorial Algorithm Design on the Cell/B.E. Processor.

David A. Bader, Fabrizio Petrini, Virat Agarwal, 2010 .

Multithreaded Algorithms for Processing Massive Graphs.

David A. Bader, Jonathan W. Berry, Bruce Hendrickson, 2007 .

Editor's Note

David A. Bader, 2015, IEEE Trans. Parallel Distributed Syst..

Hornet: An Efficient Data Structure for Dynamic Sparse Graphs and Matrices on GPUs

David A. Bader, Nicola Bombieri, Federico Busato, 2018, 2018 IEEE High Performance extreme Computing Conference (HPEC).

A Waterfall Model to Achieve Energy Efficient Tasks Mapping for Large Scale GPU Clusters

David A. Bader, Chen Xu, Wenjie Liu, 2011, 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum.

A Randomized Parallel Sorting Algorithm with an Experimental Study

David A. Bader, Joseph JáJá, David R. Helman, 1998, J. Parallel Distributed Comput..

Quickly finding a truss in a haystack

Viktor K. Prasanna, Shreyas G. Singapura, David A. Bader, 2017, 2017 IEEE High Performance Extreme Computing Conference (HPEC).

GPU merge path: a GPU merging algorithm

David A. Bader, Oded Green, Robert McColl, 2012, ICS '12.

Algorithm Engineering for Parallel Computation

David A. Bader, Peter Sanders, Bernard M. E. Moret, 2000, Experimental Algorithmics.

Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks

David A. Bader, Kamesh Madduri, Kamesh Madduri, 2006, 2006 International Conference on Parallel Processing (ICPP'06).

GTfold: a scalable multicore code for RNA secondary structure prediction

David A. Bader, Christine E. Heitsch, Stephen C. Harvey, 2009, SAC '09.

Task-based parallel breadth-first search in heterogeneous environments

David A. Bader, Eduard Ayguadé, Lluís-Miquel Munguía, 2012, 2012 19th International Conference on High Performance Computing.

7th IEEE International Workshop on High Performance Computational Biology HiCOMB 2008

Srinivas Aluru, David A. Bader, Ananth Grama, 2008, IPDPS.

Special Issue: High Performance Computational Biology

Srinivas Aluru, David A. Bader, 2004, Concurr. Pract. Exp..

Introduction to EMBRACE Workshop

David A. Bader, 2017, IPDPS Workshops.

A statistical framework for streaming graph analysis

Eric Gilbert, David A. Bader, James P. Fairbanks, 2013, 2013 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM 2013).

SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks

David A. Bader, Kamesh Madduri, Kamesh Madduri, 2008, 2008 IEEE International Symposium on Parallel and Distributed Processing.

A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code

Srinivas Aluru, David A. Bader, Vipin Sachdeva, 2016, 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

Massive streaming data analytics: a graph-based approach

David A. Bader, E. Jason Riedy, E. J. Riedy, 2013, XRDS.

DOSA: Design Optimizer for Scientific Applications

Viktor K. Prasanna, David A. Bader, V. Prasanna, 2007, 2007 IEEE International Parallel and Distributed Processing Symposium.

The Euler tour technique and parallel rooted spanning tree

David A. Bader, Guojing Cong, Guojing Cong, 2004, International Conference on Parallel Processing, 2004. ICPP 2004..

High-Performance Algorithm Engineering for Computational Phylogenetics

David A. Bader, Tandy J. Warnow, Bernard M. E. Moret, 2001, International Conference on Computational Science.

HiCOMB Introduction and Committees

Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman, 2016, 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

Performance analysis of parallel programs via message-passing graph traversal

David A. Bader, Matthew J. Sottile, Vaddadi P. Chandu, 2006, Proceedings 20th IEEE International Parallel & Distributed Processing Symposium.

Evaluating Arithmetic Expressions Using Tree Contraction: A Fast and Scalable Parallel Implementation for Symmetric Multiprocessors (SMPs) (Extended Abstract)

David A. Bader, Sukanya Sreshta, Nina R. Weisse-Bernstein, 2002, HiPC.

High-performance computing for massive graph analysis

David A. Bader, 2010 .

Combinatorial Algorithm Design on the Cell/B.E. Processor

David A. Bader, Fabrizio Petrini, Virat Agarwal, 2010, Scientific Computing with Multicore and Accelerators.

Faster Clustering Coefficient Using Vertex Covers

David A. Bader, Oded Green, Oded Green, 2013, 2013 International Conference on Social Computing.

Sorting Signed Permutations by Reversal (Reversal Distance)

David A. Bader, 2008, Encyclopedia of Algorithms.

SWARM: A Parallel Programming Framework for Multicore Processors

David A. Bader, Varun Kanade, Kamesh Madduri, 2007, IPDPS.

Parallel algorithms for personalized communication and sorting with an experimental study (extended abstract)

David A. Bader, Joseph JáJá, David R. Helman, 1996, SPAA '96.

Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis

David A. Bader, Kamesh Madduri, Kamesh Madduri, 2009, 2009 IEEE International Symposium on Parallel & Distributed Processing.

Scalable and High Performance Betweenness Centrality on the GPU

David A. Bader, Adam McLaughlin, Adam McLaughlin, 2014, SC14: International Conference for High Performance Computing, Networking, Storage and Analysis.

Faster Betweenness Centrality Based on Data Structure Experimentation

David A. Bader, Oded Green, Oded Green, 2013, ICCS.

Graphs, Matrices, and the GraphBLAS: Seven Good Reasons

David A. Bader, John R. Gilbert, Jeremy Kepner, 2015, ICCS.

GPUMemSort: A High Performance Graphic Co-processors Sorting Algorithm for Large Scale In-Memory Data

David A. Bader, Zhihui Du, Yin Ye, 2010 .

Accelerating GPU betweenness centrality

David A. Bader, Adam McLaughlin, Adam McLaughlin, 2018, Commun. ACM.

Fast Incremental Community Detection on Dynamic Graphs

David A. Bader, Anita Zakrzewska, A. Zakrzewska, 2015, PPAM.

Aging data in dynamic graphs: A comparative study

David A. Bader, Anita Zakrzewska, A. Zakrzewska, 2016, 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM).

Message from PDSEC-08 Workshop Chairs

Yi Pan, David A. Bader, Eric Aubanel, 2008, IPDPS.

Scalable Multi-threaded Community Detection in Social Networks

David A. Bader, E. Jason Riedy, Henning Meyerhenke, 2012, 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum.

A novel FDTD application featuring OpenMP-MPI hybrid parallelization

David A. Bader, Shawn-Yu Lin, Mehmet F. Su, 2004, International Conference on Parallel Processing, 2004. ICPP 2004..

A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study

David A. Bader, Bernard M. E. Moret, Mi Yan, 2001, WADS.

Computing Methods for Computational Genomics

Srinivas Aluru, David A. Bader, S. Aluru, 2006 .

SEECN: simulating complex systems using dynamic complex networks

Peter M. A. Sloot, David A. Bader, Rick Quax, 2011 .

Tailoring parallel alternating criteria search for domain specific MIPs: Application to maritime inventory routing

David A. Bader, Dimitri J. Papageorgiou, George L. Nemhauser, 2019, Comput. Oper. Res..

Editor's Note

David A. Bader, 2017, IEEE Trans. Parallel Distributed Syst..

HiCOMB Introduction and Committees

Srinivas Aluru, David A. Bader, Alba Cristina Magalhaes Alves de Melo, 2014, 2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

A Dynamic Algorithm for Updating Katz Centrality in Graphs

David A. Bader, Eisha Nathan, Eisha Nathan, 2017, ASONAM.

Logarithmic Radix Binning and Vectorized Triangle Counting

David A. Bader, Alok Tripathy, James Fox, 2018, 2018 IEEE High Performance extreme Computing Conference (HPEC).

On the design and analysis of practical parallel algorithms for combinatorial problems with applications to image processing

David A. Bader, Joseph JaJa, 1996 .

A Parallel State Assignment Algorithm for Finite State Machines

David A. Bader, Kamesh Madduri, Kamesh Madduri, 2004, HiPC.

On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures

David A. Bader, Bharadwaj Veeravalli, Diana H. P. Low, 2007, J. Parallel Distributed Comput..

A Graph-Theoretic Analysis of the Human Protein-Interaction Network Using Multicore Parallel Algorithms

David A. Bader, Kamesh Madduri, Kamesh Madduri, 2007, 2007 IEEE International Parallel and Distributed Processing Symposium.

State of the Journal

David A. Bader, 2014, IEEE Trans. Parallel Distributed Syst..

Exact and Parallel Triangle Counting in Dynamic Graphs

David A. Bader, Oded Green, Devavret Makkar, 2017, 2017 IEEE 24th International Conference on High Performance Computing (HiPC).

Benchmarking for Graph Clustering and Partitioning

David A. Bader, Peter Sanders, Christian Schulz, 2014, Encyclopedia of Social Network Analysis and Mining.

Parallel Community Detection for Massive Graphs

David A. Bader, E. Jason Riedy, Henning Meyerhenke, 2011, PPAM.

An experimental study of parallel biconnected components algorithms on symmetric multiprocessors (SMPs)

David A. Bader, Guojing Cong, Guojing Cong, 2005, 19th IEEE International Parallel and Distributed Processing Symposium.

A Linear Time Algorithm for Finding Minimum Spanning Tree Replacement Edges pdf

David A. Bader, Paul Burkhardt, David A. Bader, 2019, ArXiv.

High-performance Computing Methods for Computational Genomics

Srinivas Aluru, David A. Bader, Ananth Kalyanaraman, 2007 .

Petascale Computing for Large-Scale Graph Problems

David A. Bader, 2007, 2008 International Conference on Complex, Intelligent and Software Intensive Systems.

Benchmarking for Graph Clustering and Partitioning

David A. Bader, Peter Sanders, Christian Schulz, 2014, Encyclopedia of Social Network Analysis and Mining.

Standards for graph algorithm primitives

Michael Stonebraker, Christos Faloutsos, David A. Bader, 2014, 2013 IEEE High Performance Extreme Computing Conference (HPEC).

National Laboratory Lawrence Berkeley National Laboratory Title A Faster Parallel Algorithm and Efficient Multithreaded Implementations for Evaluating Betweenness Centrality on Massive Datasets Permalink

David A. Bader, David Ediger, Karl Jiang, 2009 .

Evolving MPI+X Toward Exascale

David A. Bader, 2016, Computer.

A Prediction Based CMP Cache Migration Policy

David A. Bader, Zhihui Du, Man Wang, 2008, 2008 10th IEEE International Conference on High Performance Computing and Communications.

ParLearning Keynotes

David A. Bader, Anantharaman Kalyanaraman, Yihua Huang, 2015, 2015 IEEE International Parallel and Distributed Processing Symposium Workshop.

Introduction to Special Issue ALENEX'12

David A. Bader, Petra Mutzel, Petra Mutzel, 2015, ACM J. Exp. Algorithmics.

Efficient Data Migration to Conserve Energy in Streaming Media Storage Systems

Xiao Qin, David A. Bader, Zhihui Du, 2012, IEEE Transactions on Parallel and Distributed Systems.

A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study

David A. Bader, Bernard M. E. Moret, Mi Yan, 2001, J. Comput. Biol..

IPDPS 2009 Organization

Viktor K. Prasanna, David A. Bader, Per Stenström, 2009 .

A New Implmentation and Detailed Study of Breakpoint Analysis

David A. Bader, Tandy J. Warnow, Bernard M. E. Moret, 2000, Pacific Symposium on Biocomputing.

Graph Ranking Guarantees for Numerical Approximations to Katz Centrality

David A. Bader, Eisha Nathan, James P. Fairbanks, 2017, ICCS.

Computational biology and high-performance computing

David A. Bader, 2004, CACM.

Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study

Larry S. Davis, David A. Bader, Joseph JáJá, 1996, Proceedings of International Conference on Parallel Processing.

Message from the Commercial Presentations and Exhibits Chair

David A. Bader, John K. Antonio, Janet M. Siegel, 2005 .

A Parallel Sorting Algorithm With an Experimental Study

David A. Bader, David R. Helman, Joseph JaJa, 1998 .

Revisiting Edge and Node Parallelism for Dynamic GPU Graph Analytics

David A. Bader, Adam McLaughlin, Adam McLaughlin, 2014, 2014 IEEE International Parallel & Distributed Processing Symposium Workshops.

A detailed study of breakpoint analysis

David A. Bader, Bernard M. E. Moret, Tandy Warnow, 2001 .

Practical parallel algorithms for personalized communication and integer sorting

David A. Bader, Joseph JáJá, David R. Helman, 1996, JEAL.

A fast, parallel spanning tree algorithm for symmetric multiprocessors

David A. Bader, Guojing Cong, 2004, 18th International Parallel and Distributed Processing Symposium, 2004. Proceedings..

Parallel Shortest Path Algorithms for Solving Large-Scale Instances

David A. Bader, Jonathan W. Berry, Kamesh Madduri, 2006, The Shortest Path Problem.

Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2

David A. Bader, Kamesh Madduri, Kamesh Madduri, 2006, 2006 International Conference on Parallel Processing (ICPP'06).

Message from the workshop chairs

Srinivas Aluru, David A. Bader, George Karypis, 2010, IPDPS Workshops.

Massive-scale Streaming Analytics: Models, Parallelism, & Real-world Applications

David A. Bader, 2018, SPAA.

A fast, energy-efficient abstraction for simultaneous breadth-first searches

David A. Bader, Adam McLaughlin, E. Jason Riedy, 2015, 2015 IEEE High Performance Extreme Computing Conference (HPEC).

A fast, parallel spanning tree algorithm for symmetric multiprocessors

David A. Bader, Guojing Cong, Guojing Cong, 2004, 18th International Parallel and Distributed Processing Symposium, 2004. Proceedings..

Kronos: A Java-Based Software System for the Processing and Retrieval of Large Scale AVHRR Data Sets 5

David A. Bader, Eric F. Vermote, John R. G. Townshend, 1999 .

Cray XMT Brings New Energy to High-Performance Computing.

David A. Bader, Jonathan W. Berry, Jarek Nieplocha, 2008 .

Scalable Data Parallel Algorithms for Texture Synthesis and Compression using Gibbs Random Fields

Rama Chellappa, David A. Bader, Joseph JaJa, 1998 .

2012 Proceedings of the Fourteenth Workshop on Algorithm Engineering and Experiments (ALENEX)

David A. Bader, Dort Mutzel, Dort Mutzel, 2012 .

A New Parallel Method for Binary Black Hole Simulations

David A. Bader, Zhihui Du, Quan Yang, 2016, Sci. Program..

HiCOMB Introduction

Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman, 2011, 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum.

Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system

David A. Bader, Vipin Sachdeva, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

STINGER: High performance data structure for streaming graphs

David A. Bader, E. Jason Riedy, David Ediger, 2012, 2012 IEEE Conference on High Performance Extreme Computing.

An improved, randomized algorithm for parallel selection with an experimental study

David A. Bader, 2004, J. Parallel Distributed Comput..

HiCOMB Introduction

Srinivas Aluru, David A. Bader, Mark J. Clement, 2012, 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum.

SIMPLE: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs)

David A. Bader, Joseph JáJá, J. JáJá, 1998, J. Parallel Distributed Comput..

Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture

David A. Bader, Bernard M. E. Moret, A. K. Illendula, 2001, WAE.

A new parallel algorithm for connected components in dynamic graphs

David A. Bader, Oded Green, Robert McColl, 2013, 20th Annual International Conference on High Performance Computing.

Fast Shared-Memory Algorithms for Computing the Minimum Spanning Forest of Sparse Graphs

David A. Bader, Guojing Cong, 2004, IPDPS.

6th IEEE International Workshop on High Performance Computational Biology HiCOMB 2007

Srinivas Aluru, David A. Bader, Ananth Grama, 2007 .

Message from the General Chair

David A. Bader, 2010, IPDPS.

Industrial applications of high-performance computing for phylogeny reconstruction

David A. Bader, Bernard M. E. Moret, Lisa Vawter, 2001, SPIE ITCom.

High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology

David A. Bader, 2005, WEA.

GABB 2016 Keynote

David A. Bader, 2016, IPDPS Workshops.

An Empirical Analysis of Parallel Random Permutation Algorithms ON SMPs

David A. Bader, Guojing Cong, Guojing Cong, 2006, PDCS.

A tile-based parallel Viterbi algorithm for biological sequence alignment on GPU with CUDA

David A. Bader, Zhihui Du, Zhaoming Yin, 2010, 2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW).

Editor's Note

David A. Bader, 2008, IEEE Trans. Parallel Distributed Syst..

Multithreaded Community Monitoring for Massive Streaming Graph Data

David A. Bader, E. Jason Riedy, E. J. Riedy, 2013, 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum.

Scalable Graph Exploration on Multicore Processors

David A. Bader, Fabrizio Petrini, Virat Agarwal, 2010, 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis.

Special Issue: High Performance Computational Biology: Editorials

Srinivas Aluru, David A. Bader, S. Aluru, 2004 .

Skip the Intersection: Quickly Counting Common Neighbors on Shared-Memory Systems

David A. Bader, Oded Green, Xiaojing An, 2019, 2019 IEEE High Performance Extreme Computing Conference (HPEC).

Optimizing energy consumption and parallel performance for static and dynamic betweenness centrality using GPUs

David A. Bader, Adam McLaughlin, E. Jason Riedy, 2014, 2014 IEEE High Performance Extreme Computing Conference (HPEC).

High performance MPEG-2 software decoder on the cell broadband engine

David A. Bader, Sulabh Patel, 2008, 2008 IEEE International Symposium on Parallel and Distributed Processing.

Evaluating Cell/B.E software cache for ClustalW

David A. Bader, Michael Kistler, Vipin Sachdeva, 2010, Proceedings of 2010 IEEE International Symposium on Circuits and Systems.

Parallel Algorithm Design for Branch and Bound

David A. Bader, Cynthia A. Phillips, William E. Hart, 2005 .

Incrementally updating Katz centrality in dynamic graphs

David A. Bader, Eisha Nathan, 2018, Social Network Analysis and Mining.

Graph Algorithms

David A. Bader, Guojing Cong, Guojing Cong, 2011, Encyclopedia of Parallel Computing.

High Performance Algorithm Engineering for Large-scale Problems

David A. Bader, 2008, Encyclopedia of Algorithms.

HiCOMB Introduction

Srinivas Aluru, David A. Bader, Jaroslaw Zola, 2011, 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum.

A Graph-Theoretic Analysis of the Human Protein-Interaction Network Using Multicore Parallel Algorithms

David A. Bader, Kamesh Madduri, 2007, IPDPS.

A Methodology for Co-Location Aware Application Performance Modeling in Multicore Computing

David A. Bader, Anthony A. Maciejewski, Howard Jay Siegel, 2015, 2015 IEEE International Parallel and Distributed Processing Symposium Workshop.

Editor's Note

David A. Bader, 2016, IEEE Trans. Parallel Distributed Syst..

Alternating criteria search: a parallel large neighborhood search algorithm for mixed integer programs

David A. Bader, George L. Nemhauser, Shabbir Ahmed, 2018, Comput. Optim. Appl..

An Open Benchmark Suite for Evaluating Computer Architecture on Bioinformatics and Life Science Applications

David A. Bader, Vipin Sachdeva, 2006 .

Computing discrete transforms on the Cell Broadband Engine

David A. Bader, Seunghwa Kang, Virat Agarwal, 2009, Parallel Comput..

cuSTINGER: Supporting dynamic graph algorithms for GPUs

David A. Bader, Oded Green, Oded Green, 2016, 2016 IEEE High Performance Extreme Computing Conference (HPEC).

Petascale Computing (Chapman & Hall/Crc Computational Science Series)

David A. Bader, 2007 .

Tracking Structure of Streaming Social Networks

David A. Bader, E. Jason Riedy, Henning Meyerhenke, 2011, 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum.

Energy-Efficient Scheduling for Best-Effort Interactive Services to Achieve High Response Quality

David A. Bader, Yu He, Yuxiong He, 2013, 2013 IEEE 27th International Symposium on Parallel and Distributed Processing.

Scalable data parallel algorithms for texture synthesis using Gibbs random fields

Rama Chellappa, David A. Bader, Joseph JáJá, 1995, IEEE Trans. Image Process..

On the random access performance of Cell Broadband Engine with graph analysis application pdf

David A. Bader, Seunghwa Kang, Mingyu Chen, 2011, ArXiv.

HiCOMB Introduction and Committees

Srinivas Aluru, David A. Bader, Sanguthevar Rajasekaran, 2014, 2015 IEEE International Parallel and Distributed Processing Symposium Workshop.

Computational Challenges in Emerging Combinatorial Scientific Computing Applications

David A. Bader, Kamesh Madduri, Kamesh Madduri, 2012 .

Lock-Free Parallel Algorithms: An Experimental Study

David A. Bader, Guojing Cong, Guojing Cong, 2004, HiPC.

An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances

David A. Bader, Jonathan W. Berry, Kamesh Madduri, 2007, ALENEX.

High‐Performance Phylogeny Reconstruction Under Maximum Parsimony

Albert Y. Zomaya, David A. Bader, Bernard M. E. Moret, 2006 .

DOSA: Design Optimizer for Scientific Applications

Viktor K. Prasanna, David A. Bader, V. Prasanna, 2007, 2007 IEEE International Parallel and Distributed Processing Symposium.

Designing Fast Fourier Transform for the IBM Cell Broad- band Engine

David A. Bader, Virat Agarwal, Virat Agarwal, 2010 .

High-performance computational biology

Srinivas Aluru, David A. Bader, S. Aluru, 2008, Parallel Comput..

A parallel local search framework for the Fixed-Charge Multicommodity Network Flow problem

David A. Bader, George L. Nemhauser, Shabbir Ahmed, 2017, Comput. Oper. Res..

Scientific Computing with Multicore and Accelerators

Jack Dongarra, David A. Bader, Jakub Kurzak, 2010, Chapman and Hall / CRC computational science series.

A measurement and simulation methodology for parallel computing performance studies

David A. Bader, Matthew Joseph Sottile, 2006 .

Proceedings of the ISCA 17th International Conference on Parallel and Distributed Computing Systems, September 15-17, 2004, The Canterbury Hotel, San Francisco, California, USA

David A. Bader, Ashfaq A. Khokhar, A. Khokhar, 2004, PDCS.

Sustainable Software Development for Next-Gen Sequencing (NGS) Bioinformatics on Emerging Platforms pdf

Yogesh L. Simmhan, Viktor K. Prasanna, David A. Bader, 2013, ArXiv.

Designing Fast Fourier Transform for the IBM Cell Broadband Engine

David A. Bader, Virat Agarwal, Virat Agarwal, 2010, Scientific Computing with Multicore and Accelerators.

Tracking local communities in streaming graphs with a dynamic algorithm

David A. Bader, Anita Zakrzewska, A. Zakrzewska, 2016, Social Network Analysis and Mining.

Engineering Algorithms for Computational Biology

David A. Bader, 2008, Encyclopedia of Algorithms.

The Euler tour technique and parallel rooted spanning tree

David A. Bader, Guojin Cong, 2004 .

High performance combinatorial algorithm design on the Cell Broadband Engine processor

David A. Bader, Seunghwa Kang, Virat Agarwal, 2007, Parallel Comput..

High-performance Computing Methods for Computational Genomics

Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman, 2006, 2007 IEEE International Parallel and Distributed Processing Symposium.

Accelerating and Expanding End-to-End Data Science Workflows with DL/ML Interoperability Using RAPIDS

David A. Bader, Even Oldridge, Bartley Richardson, 2020, KDD.

Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study

David A. Bader, Joseph JáJá, 1996, J. Parallel Distributed Comput..

Large-Scale Network Analysis

David A. Bader, Kamesh Madduri, Christine E. Heitsch, 2011, Graph Algorithms in the Language of Linear Algebra.

Enhancing Cache Coherent Architectures with access patterns for embedded manycore systems

David A. Bader, Loïc Cudennec, Jean-Thomas Acquaviva, 2012, 2012 International Symposium on System on Chip (SoC).

When Good Enough Is Better: Energy-Aware Scheduling for Multicore Servers

David A. Bader, Jason Liu, Yuxiong He, 2017, 2017 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW).

Algorithm Engineering Challenges in Multicore and Manycore Systems

David A. Bader, Seunghwa Kang, David Ediger, 2011, it Inf. Technol..

Load balanced clustering coefficients

David A. Bader, Lluís-Miquel Munguía, Oded Green, 2014, PPAA '14.

An efficient transactional memory algorithm for computing minimum spanning forest of sparse graphs

David A. Bader, Seunghwa Kang, Seunghwa Kang, 2009, PPoPP '09.

Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions

David A. Bader, Alexandros Stamatakis, Usman Roshan, 2006, Adv. Comput..

Editorial: Special Section on High-Performance Computational Biology

Nancy M. Amato, Srinivas Aluru, David A. Bader, 2006, IEEE Trans. Parallel Distributed Syst..

Techniques for Designing Efficient Parallel Graph Algorithms for SMPs and Multicore Processors

David A. Bader, Guojing Cong, Guojing Cong, 2007, ISPA.

Linux and Supercomputing: How My Passion for Building COTS Systems Led to an HPC Revolution

David A. Bader, 2021, IEEE Ann. Hist. Comput..

Interactive data science at scale

David A. Bader, 2021, CF.

Interactive Graph Stream Analytics in Arkouda

David A. Bader, Zhihui Du, Oliver Alvarado Rodriguez, 2021, Algorithms.

Hierarchical Data Format

David A. Bader, Ümit V. Çatalyürek, J. Dongarra, 2011, Encyclopedia of Parallel Computing.

Detecting Communities from Given Seeds in Social Networks

David A. Bader, Pushkar R. Pande, Jason Riedy, 2011 .

STINGER : Spatio-Temporal Interaction Networks and Graphs ( STING ) Extensible Representation

David A. Bader, Daniel Chavarrı́a-Miranda, 2009 .

588 Graph Partitioning and Graph Clustering

David A. Bader, P. Sanders, D. Wagner, 2013 .

Fast character optimization in parsimony phylogeny reconstruction

David A. Bader, Mi Yan, 2003 .

High-performance algorithms for phylogeny reconstruction with maximum parsimony

David A. Bader, Mi Yan, 2004 .

An exact linear-time algorithm for computing genomic distances under inversions and deletions U

David A. Bader, B. Moret, Tai-Hung Liu, 2003 .

Computing Betweenness Centrality for Small World Networks on a GPU

David A. Bader, Pushkar R. Pande, 2011 .

Designing Scalable Synthetic Compact Applications for Benchmarking High Productivity Computing Systems

David A. Bader, 2006 .

GTgraph : A Synthetic Graph Generator Suite

David A. Bader, Kamesh Madduri, 2006 .

High performance computing algorithms for land cover dynamics using remote sensing data

David A. Bader, J. Townshend, S. Kalluri, 2000, International Journal of Remote Sensing.

A Parallel Sorting AlgorithmWith an Experimental Study ( Preliminary Draft )

David A. Bader, D. Helman, 1995 .

High Performance Computing Applications in Remote Sensing Studies for Land Cover Dynamics

David A. Bader, J. Townshend, S. Kalluri, 1998 .

A fast linear-time algorithm for inversion distance with an experimental comparison

David A. Bader, B. Moret, Mi Yan, 2001 .

DEPARTMENT OFELECTRICAL AND COMPUTER ENGINEERING SCHOOL OFENGINEERING UNIVERSITY OF NEW MEXICO High Performance Computing Algorithms for Land Cover Dynamics Using Remote Sensing Data

David A. Bader, J. Townshend, S. Kalluri, 1999 .

A Comparison of the Performance of List Ranking and Connected Components Algorithms on SMP and MTA Shared-Memory Systems

David A. Bader, Guojing Cong, Guojing Cong, 2004 .

Understanding evolution and the basic structure and function of proteins are two grand challenge problems in biology that can be solved only through the use of high-performance computing

David A. Bader, 2004 .

Rec-DCM-Eigen: Reconstructing a Less Parsimonious but More Accurate Tree in Shorter Time

David A. Bader, Jijun Tang, S. Schaeffer, 2011, PloS one.

A New Algorithmic Model for Graph Analysis of Streaming Data

David A. Bader, Jason Riedy, Chunxing Yin, 2018 .

High-Performance Algorithm Engineering for Gene-Order Phylogenies

David A. Bader, Bernard M. E. Moret, Tandy Warnow, .

Achieving High Performance for Big Data Analytics

David A. Bader, Oded Green, 2013 .

Workshop Report: Petascale Computing in the Biological Sciences

David A. Bader, 2006 .

Kronos : A software system for the processing and retrieval of large-scale AVHRR data sets

David A. Bader, Eric F. Vermote, Joseph JaJa, 2000 .

Sparse Linear Algebra

Jack Dongarra, David A. Bader, Jakub Kurzak, 2010 .

Rapid prototyping of parallel primal heuristics for domain specific MIPs : Application to maritime inventory routing

David A. Bader, G. Nemhauser, Shabbir Ahmed, 2018 .

Computational Graph Analytics for Massive Streaming Data

David A. Bader, Henning Meyerhenke, David Ediger, 2011 .

Message from the workshop chairs

Srinivas Aluru, Nagiza F. Samatova, Albert Y. Zomaya, 2009 .

A local measure of community change in dynamic graphs

David A. Bader, James P. Fairbanks, A. Zakrzewska, 2016, 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM).

Message from the workshop chairs

David A. Bader, J. Zola, S. Aluru, 2010, 2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW).

Áòòù×øöööð Ôôðð Blockin Blockinøøóò× Óó Àààà¹èööóöññò Óñôùøøòò Óö Èèýðóóóòý Êê Blockinóò×øöù Blockinøøóò

David A. Bader, Bernard M. E. Moret, Lisa Vawter, 2007 .

E Engineering Algorithms for Large Network Applications Sorting by Transpositions and Reversals (approx Ratio 1.5) Substring Parsimony Recommended Reading Engineering Algorithms for Large Network Applications

David A. Bader, Bader, Zaroliagis, 2022 .

Ubc9 Impairs Activation of the Brown Fat Energy Metabolism Program in Human White Adipocytes.

David A. Bader, Sean M. Hartig, M. Hamilton, 2015, Molecular endocrinology.

Mitophagy deficiency increases NLRP3 to induce brown fat dysfunction in mice

David A. Bader, Sean M. Hartig, D. Moore, 2020, Autophagy.

Benchmarking for Graph Clustering and Partitioning

David A. Bader, P. Sanders, D. Wagner, 2014, Encyclopedia of Social Network Analysis and Mining.

2 Overview of Klein and Reif ’ s Algorithm

David A. Bader, Sukanya Sreshta, 2003 .

An Energy-Efficient Abstraction for Simultaneous Breadth-First Searches

David A. Bader, Jason Riedy, Adam McLaughlin, 2015 .

A System-wide Productivity Figure of Merit 1

David A. Bader, J. Gilbert, J. Kepner, 2006 .

End-to-end resource analysis for quantum interior point methods and portfolio optimization

David A. Bader, Cedric Yen-Yu Lin, B. D. Clader, 2022, 2211.12489.

Tumour metabolism and its unique properties in prostate adenocarcinoma

David A. Bader, S. McGuire, 2020, Nature Reviews Urology.

Facial Expression Recognition System using Statistical Feature and Neural Network

David A. Bader, Nazil Perveen, Shubhrata Gupta, 2012 .

Tracking local communities in streaming graphs with a dynamic algorithm

David A. Bader, A. Zakrzewska, 2016, Social Network Analysis and Mining.

Prostate Cancer Energetics and Biosynthesis.

David A. Bader, S. McGuire, M. Titus, 2019, Advances in experimental medicine and biology.

STAT1 Dissociates Adipose Tissue Inflammation From Insulin Sensitivity in Obesity

David A. Bader, Sean M. Hartig, K. Rajapakshe, 2020, Diabetes.

A performance evaluation of open source graph databases

David A. Bader, David Ediger, Jason Poovey, 2014, PPAA '14.

Chapter 5 PARALLEL ALGORITHM DESIGN FOR BRANCH AND BOUND

David A. Bader, 2004 .

Traversing large graphs on GPUs with unified memory

David A. Bader, Piyush Sao, Prasun Gera, 2020, Proc. VLDB Endow..

Incrementally updating Katz centrality in dynamic graphs

David A. Bader, Eisha Nathan, 2018, Social Network Analysis and Mining.

1 High-Performance Phylogeny Reconstruction Under Maximum Parsimony

David A. Bader, Bernard M. E. Moret, T. Williams, 2004 .

New stopping criteria for spectral partitioning

David A. Bader, James P. Fairbanks, Anita Zakrzewska, 2016, 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM).

GTfold: Enabling parallel RNA secondary structure prediction on multi-core desktops

David A. Bader, Christine E. Heitsch, S. Harvey, 2012, BMC Research Notes.

Correction: Epigenetic loss of AOX1 expression via EZH2 leads to metabolic deregulations and promotes bladder cancer progression

David A. Bader, F. Stossi, K. Rajapakshe, 2020, Oncogene.

BioPerf: a benchmark suite to evaluate high-performance computer architecture on bioinformatics applications

David A. Bader, Yue Li, Tao Li, 2005, IEEE International. 2005 Proceedings of the IEEE Workload Characterization Symposium, 2005..

Using RAPIDS AI to Accelerate Graph Data Science Workflows

David A. Bader, Oded Green, David Bader, 2020, 2020 IEEE High Performance Extreme Computing Conference (HPEC).

A fast, parallel spanning tree algorithm for symmetric multiprocessors

David A. Bader, Guojing Cong, 2004, 18th International Parallel and Distributed Processing Symposium, 2004. Proceedings..

Call for papers

David A. Bader, 2005, The journal of mental health administration.

Honors and awards

David A. Bader, Kamesh Madduri, L. Brown, 1972, Austrian History Yearbook.

Applications

David A. Bader, R. Pennington, 2001, Int. J. High Perform. Comput. Appl..

Workshop co-chairs

David A. Bader, Vivek Sarkar, J. Träff, 2009, 2009 International Workshop Terahertz and Mid Infrared Radiation: Basic Research and Practical Applications.