L. Sadzewicz

发表

Aligner optimization increases accuracy and decreases compute times in multi-species sequence data

Ricky S. Adkins, Joana C. Silva, C. Fraser, 2017, Microbial genomics.

Whole-Genome Sequences of Bacteremia Isolates of Bordetella holmesii

C. Fraser, H. Tettelin, Thomas A. Hooven, 2017, Genome Announcements.

FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

Ricky S. Adkins, C. Fraser, J. Mattick, 2021, mSystems.

Comparison of long read sequencing technologies in resolving bacteria and fly genomes

D. Rasko, L. Tallon, Xuechu Zhao, 2020, bioRxiv.

Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis

C. Fraser, M. Chibucos, L. Tallon, 2014, BMC Genomics.

Highly Specialized Carbohydrate Metabolism Capability in Bifidobacterium Strains Associated with Intestinal Barrier Maturation in Early Preterm Infants

P. Gajer, J. Ravel, L. Tallon, 2022, bioRxiv.

Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses

C. Fraser, J. Foster, D. Rasko, 2018, bioRxiv.

Comparison of long-read sequencing technologies in interrogating bacteria and fly genomes

D. Rasko, C. E. Hjelmen, J. Johnston, 2021, G3.

Analysis of complete genome sequence and major surface antigens of Neorickettsia helminthoeca, causative agent of salmon poisoning disease

C. Fraser, S. Daugherty, Naomi A. Sengamalay, 2017, Microbial biotechnology.

A comparative analysis of library prep approaches for sequencing low input translatome samples

R. Hertzano, A. Shetty, L. Tallon, 2018, BMC Genomics.

Peripheral blood transcriptomic profiling indicates molecular mechanisms commonly regulated by binge-drinking and placebo-effects

X. Wang, L. Colloca, J. Cornell, 2023, medRxiv.

Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis

C. Fraser, S. Daugherty, Naomi A. Sengamalay, 2021, BMC genomics.

Standardized Metadata for Human Pathogen/Vector Genomic Sequences

Brett E. Pickett, Richard H. Scheuermann, Lynn M. Schriml, 2014, PloS one.

Evaluation of a high-throughput, cost-effective Illumina library preparation kit

Joana C. Silva, D. Rasko, L. Tallon, 2021, Scientific Reports.

Genetic deletion of trkB.T1 increases neuromuscular function.

Chao Zhang, K. Shokat, R. Balice-Gordon, 2012, American journal of physiology. Cell physiology.

Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions

Olukemi O. Ifeonu, Joana C. Silva, Choukri Ben Mamoun, 2016, Scientific Reports.

FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science

Heike Sichtig, Jonathan E. Allen, Uwe Scherf, 2019, Nature Communications.

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential

James B. Munro, Zalak V. Shah, Joana C. Silva, 2019, Genome Medicine.

Treg-inducing capacity of genomic DNA of Bifidobacterium longum subsp. infantis.

L. Tallon, J. Bellanti, R. Calderone, 2020, Allergy and asthma proceedings.

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential

James B. Munro, Zalak V. Shah, Joana C. Silva, 2020, Genome medicine.

Multispecies Transcriptomics Data Set of Brugia malayi, Its Wolbachia Endosymbiont wBm, and Aedes aegypti across the B. malayi Life Cycle

J. Foster, L. Tallon, N. Kumar, 2018, Microbiology Resource Announcements.

Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples

C. Fraser, S. Daugherty, L. Tallon, 2016, Scientific Reports.

Complete Mitochondrial Genome Sequence of Mansonella perstans

A. Hoerauf, Suvarna Nadendla, L. Tallon, 2020, Microbiology Resource Announcements.

Drug Repurposing of Bromodomain Inhibitors as Potential Novel Therapeutic Leads for Lymphatic Filariasis Guided by Multispecies Transcriptomics

J. Foster, L. Tallon, N. Kumar, 2019, mSystems.

Genetic Variation In Vitro and In Vivo of an Attenuated Lassa Vaccine Candidate

C. Fraser, G. Myers, J. Carr, 2013, Journal of Virology.

Attenuated Lassa Vaccine Candidate of an In Vivo and In Vitro Genetic Variation

C. Fraser, G. Myers, J. Carr, 2014 .

Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States

C. Fraser, T. Cebula, J. Ravel, 2014, Genome Announcements.

High Coverage Highly Accurate Long-Read Sequencing of a Mouse Neuronal Cell Line Using the PacBio Revio Sequencer

L. Tallon, J. Neidich, Tychele N. Turner, 2023, bioRxiv.

Genomic Insights into the Emerging Human Pathogen Mycobacterium massiliense

David R. Riley, C. Fraser, H. Tettelin, 2012, Journal of bacteriology.

Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions

J. Pettis, Renhua Li, L. Tallon, 2013, BMC Genomics.

Whole-Genome Sequences of Burkholderia pseudomallei Isolates Exhibiting Decreased Meropenem Susceptibility

E. Paxinos, Naomi A. Sengamalay, L. Tallon, 2017, Genome Announcements.

Accumulation of endosymbiont genomes in an insect autosome followed by endosymbiont replacement

J. Mattick, L. Tallon, Xuechu Zhao, 2022, Current Biology.

in mouse muscle Adaptation to lengthening contraction-induced injury

R. Armstrong, Chao Zhang, K. Shokat, 2015 .

Evolution of Mycobacterium abscessus in the human lung: Cumulative mutations and genomic rearrangement of porin genes in patient isolates

H. Tettelin, S. Shallom, E. Sampaio, 2023, Virulence.

Nearly Complete Genome Sequence of Brugia pahangi FR3

J. Mattick, J. Foster, Suvarna Nadendla, 2020, Microbiology Resource Announcements.

FDA-ARGOS: A Public Quality-Controlled Genome Database Resource for Infectious Disease Sequencing Diagnostics and Regulatory Science Research

Heike Sichtig, Jonathan E. Allen, Tom Slezak, 2018, bioRxiv.

Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses

C. Fraser, J. Foster, D. Rasko, 2018, Scientific Reports.

FADU: A Feature Counting Tool for Prokaryotic RNA-Seq Analysis

Ricky S. Adkins, C. Fraser, D. Rasko, 2018, bioRxiv.

No evidence for intermolecular recombination in human fibroblast and blood mtDNA from individuals with biparental mtDNA transmission

L. Tallon, Taosheng Huang, S. Luo, 2020, bioRxiv.

Successful Profiling of Plasmodium falciparum var Gene Expression in Clinical Samples via a Custom Capture Array

Albert E. Zhou, Joana C. Silva, O. Doumbo, 2021, mSystems.

Peripheral blood transcriptomic profiling of molecular mechanisms commonly regulated by binge drinking and placebo effects

Nageswara Rao Pilli, J. Cornell, C. Seneviratne, 2024, Scientific reports.

STAG2 mutations regulate 3D genome organization, chromatin loops, and Polycomb signaling in glioblastoma multiforme

J. Sarkaria, L. Sadzewicz, Fulai Jin, 2024, The Journal of biological chemistry.