Degui Zhi

发表

Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction pdf

Ziqian Xie, Cui Tao, Degui Zhi, 2020, npj Digital Medicine.

P-smoother: efficient PBWT smoothing of large haplotype panels

D. Zhi, Shaojie Zhang, A. Naseri, 2022, Bioinformatics advances.

RaPID-Query for Fast Identity by Descent Search and Genealogical Analysis

D. Zhi, Shaojie Zhang, A. Naseri, 2022, bioRxiv.

Personalized genealogical history of UK individuals inferred from biobank-scale IBD segments

Shaojie Zhang, A. Naseri, Xiaoming Liu, 2021, BMC Biology.

RAFFI: Accurate and fast familial relationship inference in large scale biobank studies using RaPID.

Xihong Lin, D. Zhi, Shaojie Zhang, 2021, PLoS genetics.

Personalized genealogical history inferred from biobank-scale IBD segments

D. Zhi, Shaojie Zhang, A. Naseri, 2019, bioRxiv.

Social media and outbreaks of emerging infectious diseases: A systematic review of literature

Degui Zhi, Lu Tang, D. Zhi, 2018, American Journal of Infection Control.

MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning

Kai Wang, D. Zhi, Xiaoming Liu, 2021, bioRxiv.

Identifying influential neighbors in social networks and venue affiliations among young MSM: A data science approach to predict HIV infection.

K. Fujimoto, Yang Xiang, Fang Li, 2020, AIDS.

Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole genome sequencing studies at scale

Ivana V. Yang, Andrew D. Johnson, Ryan D. Hernandez, 2020, Nature Genetics.

Recurrent neural network models (CovRNN) for predicting outcomes of patients with COVID-19 on admission to hospital: model development and validation using electronic health record data

L. Rasmy, Yujia Zhou, D. Zhi, 2022, The Lancet Digital Health.

Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies

Yang Xiang, Hua Xu, Degui Zhi, 2020, J. Am. Medical Informatics Assoc..

Asthma Exacerbation Prediction and Interpretation based on Time-sensitive Attentive Neural Network: A Retrospective Cohort Study

Hua Xu, Yang Xiang, Yujia Zhou, 2019 .

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study (Preprint)

Yang Xiang, L. Rasmy, Yujia Zhou, 2019 .

Leveraging collective regulatory effects of long-range DNA methylations to predict gene expressions and estimate their effects on phenotypes in cancer

X. Cui, D. Zhi, H. Park, 2018, bioRxiv.

Ultra-fast Identity by Descent Detection in Biobank-Scale Cohorts using Positional Burrows–Wheeler Transform

Xiaoming Liu, D. Zhi, Shaojie Zhang, 2017, bioRxiv.

All pins are not created equal: communicating skin cancer visually on Pinterest.

Degui Zhi, Lu Tang, Lu Tang, 2019, Translational behavioral medicine.

PheME: A deep ensemble framework for improving phenotype prediction from multi-modal data

L. Rasmy, Xia Hu, Shenghan Zhang, 2023, ArXiv.

PK-RNN-V E: A Deep Learning Model Approach to Vancomycin Therapeutic Drug Monitoring Using Electronic Health Record Data

L. Rasmy, B. Mao, Hongyu Miao, 2022, medRxiv.

Public Perception Analysis of Tweets During the 2015 Measles Outbreak: Comparative Study Using Convolutional Neural Network Models

Jingcheng Du, Yang Xiang, Cui Tao, 2018, Journal of medical Internet research.

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Hua Xu, Yang Xiang, L. Rasmy, 2019, Journal of medical Internet research.

Alterations in the Gut Microbiome at 6 Months of Age in Obese Latino Infants

J. Wojcicki, Annette P. Ville, E. Levine, 2020, Journal of the American College of Nutrition.

Time-sensitive clinical concept embeddings learned from large electronic health records

Yang Xiang, Cui Tao, Zhiheng Li, 2019, BMC Medical Informatics and Decision Making.

Clinical Named Entity Recognition Using Deep Learning Models

Jun Xu, Hua Xu, Yonghui Wu, 2017, AMIA.

Texas Public Agencies’ Tweets and Public Engagement During the COVID-19 Pandemic: Natural Language Processing Approach

D. Zhi, Wenlin Liu, Xueying Zhang, 2020, JMIR public health and surveillance.

Toward a standard formal semantic representation of the model card report

Kirk Roberts, Licong Cui, Fang Li, 2022, BMC Bioinformatics.

A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set

Fei Wang, Xin Geng, Hua Xu, 2018, J. Biomed. Informatics.

Tweeting about measles during stages of an outbreak: A semantic network approach to the framing of an emerging infectious disease

Degui Zhi, Lu Tang, Lu Tang, 2018, American Journal of Infection Control.

Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts

D. Zhi, Shaojie Zhang, A. Naseri, 2022, GigaScience.

HaploHide: A Data Hiding Framework for Privacy Enhanced Sharing of Personal Genetic Data

Xiaoqian Jiang, Degui Zhi, Arif Harmanci, 2019, bioRxiv.

Detecting transcription of ribosomal protein pseudogenes in diverse human tissues from RNA-seq data

Peter D. Tonner, Shaojie Zhang, V. Srinivasasainagendra, 2012, BMC Genomics.

Fast and accurate local ancestry inference with Recomb-Mix

Shaojie Zhang, Yuan Wei, Degui Zhi, 2023, bioRxiv.

Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation.

L. Rasmy, Yujia Zhou, Fang Li, 2024, Journal of the American Heart Association.

Protein-ligand binding affinity prediction: Is 3D binding pose needed?

Z. Xie, Degui Zhi, Ming-Hsiu Wu, 2024, bioRxiv.

RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts

Shaojie Zhang, Degui Zhi, Ardalan Naseri, 2019, Genome Biology.

Efficient haplotype matching between a query and a panel for genealogical search

Degui Zhi, Ardalan Naseri, Erwin Holzhauser, 2019, Bioinform..

Genealogical search using whole-genome genotype profiles

Shaojie Zhang, A. Naseri, R. Lewis, 2020 .

ProxyTyper: Generation of Proxy Panels for Privacy-aware Outsourcing of Genotype Imputation

Degui Zhi, Xiaoqian Jiang, Arif Harmanci, 2023, bioRxiv.

Vasopressor treatment and mortality following nontraumatic subarachnoid hemorrhage: a nationwide electronic health record analysis.

L. Rasmy, D. Zhi, S. DeSantis, 2020, Neurosurgical focus.

Multi-allelic positional Burrows-Wheeler transform

Shaojie Zhang, Degui Zhi, Ardalan Naseri, 2017, BMC Bioinformatics.

FiMAP: A fast identity-by-descent mapping test for biobank-scale cohorts

D. Zhi, A. Naseri, H. Chen, 2021, medRxiv.

Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank

A. Naseri, Degui Zhi, Shaojie Zhang, 2024, eLife.