Misha Kapushesky

发表

Creating an in-house ’omics data portal using EBI Atlas software

David Dean, Ketan Patel, Misha Kapushesky, 2012 .

OntoCAT -- simple ontology search and integration in Java, R and REST/JavaScript

Morris A. Swertz, Helen E. Parkinson, Tony Burdett, 2011, BMC Bioinformatics.

Gene Expression Atlas at the European Bioinformatics Institute

Ibrahim Emam, James Malone, Helen E. Parkinson, 2009, Nucleic Acids Res..

ArrayExpress: a public database of gene expression data at EBI.

Sergio Contrino, Helen Parkinson, Susanna-Assunta Sansone, 2003, Comptes rendus biologies.

Data Storage and Analysis in ArrayExpress and Expression Profiler

Helen Parkinson, Alvis Brazma, Ugis Sarkans, 2008, Current protocols in bioinformatics.

ArrayExpress—a public database of microarray experiments and gene expression profiles

Helen E. Parkinson, Alvis Brazma, Ugis Sarkans, 2006, Nucleic Acids Res..

Expression Profiler: next generation - an online platform for analysis of microarray data

Aedín C. Culhane, Meelis Kull, Aurora Torrente, 2004, Nucleic Acids Res..

Modeling sample variables with an Experimental Factor Ontology

Anna Zhukova, James Malone, Helen E. Parkinson, 2010, Bioinform..

ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression

Alvis Brazma, Misha Kapushesky, Christian Schwager, 2006, Bioinform..

ontoCAT: an R package for ontology traversal and search

Morris A. Swertz, Natalja Kurbatova, Tomasz Adamusiak, 2011, Bioinform..

ArrayExpress—a public repository for microarray gene expression data at the EBI

Sergio Contrino, Helen E. Parkinson, Susanna-Assunta Sansone, 2004, Nucleic Acids Res..

Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation

Alexander Kanapin, Misha Kapushesky, Lev Soinov, 2004, WABI.

Developing an Ontology from the Application Up

James Malone, Helen E. Parkinson, Tomasz Adamusiak, 2009, OWLED.

ontoCAT: package for basic operations with ontologies

Morris A. Swertz, Natalja Kurbatova, Tomasz Adamusiak, 2011 .

The ArrayExpress gene expression database: a software engineering and implementation perspective

Sergio Contrino, Helen E. Parkinson, Susanna-Assunta Sansone, 2005, Bioinform..

MoDa-A Data Warehouse for Multi-"Omics" Data

Ibrahim Emam, Alvis Brazma, Ugis Sarkans, 2013 .

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

Aedín C. Culhane, Benjamin Haibe-Kains, John Quackenbush, 2011, Nucleic Acids Res..

A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings

Aurora Torrente, Alvis Brazma, Misha Kapushesky, 2005, Bioinform..

A pipeline for RNA-seq data processing and quality assessment

Alvis Brazma, Andrew Tikhonov, Misha Kapushesky, 2011, Bioinform..

ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression

Ibrahim Emam, Marco Brandizi, Faisal Ibne Rezwan, 2008, Nucleic Acids Res..

Importing ArrayExpress datasets into R/Bioconductor

Audrey Kauffmann, Helen E. Parkinson, Wolfgang Huber, 2009, Bioinform..

Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments

Aedín C. Culhane, Robert Petryszak, James Malone, 2011, Nucleic Acids Res..

4DXpress: a database for cross-species expression pattern comparisons

Thorsten Henrich, Joachim Wittbrodt, Peer Bork, 2007, Nucleic Acids Res..

ArrayExpress - a public repository for microarray gene expression data at the EBI

Helen E. Parkinson, Susanna-Assunta Sansone, Philippe Rocca-Serra, 2003, Nucleic Acids Res..

Data storage and analysis in ArrayExpress.

Helen Parkinson, Alvis Brazma, Ugis Sarkans, 2006, Methods in enzymology.

Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress

Xi Wang, Thorsten Henrich, Joachim Wittbrodt, 2008, APBC.

Systems biology of infectious diseases: a focus on fungal infections.

Duccio Cavalieri, Brian Miller, Paul Bowyer, 2011, Immunobiology.

Unraveling nature's networks

Misha Kapushesky, Lev Soinov, L. Soinov, 2003, Genome Biology.