Guoqian Jiang

Anand Srivastava, Fei Wang, Jyotishman Pathak, 2019, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Developing a portable natural language processing based phenotyping system

Himanshu Sharma, Yizhen Zhang, Yuan Luo, 2018, BMC Medical Informatics and Decision Making.

Developing a FHIR-based Framework for Phenome Wide Association Studies: A Case Study with A Pan-Cancer Cohort.

Deepak K. Sharma, Chen Wang, Nansu Zong, 2020, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

MicroRNA-mRNA interactions in a murine model of hyperoxia-induced bronchopulmonary dysplasia

Y. Asmann, D. Wigle, S. Tomaszek, 2012, BMC Genomics.

Machine Learning for Lung Cancer Diagnosis, Treatment, and Prognosis

G. Jiang, Yawei Li, P. Yang, 2022, Genom. Proteom. Bioinform..

Machine Learning Applications in Lung Cancer Diagnosis, Treatment and Prognosis

G. Jiang, Yawei Li, P. Yang, 2022, ArXiv.

Machine Learning Applications in Diagnosis, Treatment and Prognosis of Lung Cancer

G. Jiang, Yawei Li, P. Yang, 2022 .

Deep Denoising of Raw Biomedical Knowledge Graph From COVID-19 Literature, LitCovid, and Pubtator: Framework Development and Validation

Victoria Ngo, Yue Yu, Hongfang Liu, 2022, Journal of medical Internet research.

Mining Hierarchies and Similarity Clusters from Value Set Repositories

Hongfang Liu, Feichen Shen, Guoqian Jiang, 2017, AMIA.

A corpus-driven standardization framework for encoding clinical problems with HL7 FHIR

Hongfang Liu, Guoqian Jiang, Kevin J Peterson, 2020, J. Biomed. Informatics.

Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries

Hongfang Liu, Fei Wang, Yuan Luo, 2019, J. Biomed. Informatics.

Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data

Chen Wang, Hongfang Liu, Feichen Shen, 2019, JAMIA open.

A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments

Joshua C. Denny, Jyotishman Pathak, Abel N. Kho, 2018, J. Am. Medical Informatics Assoc..

Standardized Drug and Pharmacological Class Network Construction

Christopher G. Chute, Qian Zhu, Guoqian Jiang, 2013, VDOS+DO@ICBO.

ADEpedia: a scalable and standardized knowledge base of Adverse Drug Events using semantic web technology.

Christopher G Chute, Guoqian Jiang, Harold R Solbrig, 2011, AMIA ... Annual Symposium proceedings. AMIA Symposium.

Design and validation of a FHIR-based EHR-driven phenotyping toolbox

Natalie C. Benda, Evan T Sholle, Daniel J. Stone, 2022, J. Am. Medical Informatics Assoc..

Lexical Term Standardization of ICD-11 Using Semantic Web Technologies

Christopher G. Chute, Guoqian Jiang, Harold R. Solbrig, 2014, American Medical Informatics Association Annual Symposium.

Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution

Jie Xu, Christopher G. Chute, Joshua C. Denny, 2016, J. Biomed. Informatics.

Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards

Cory M. Endle, C. Chute, Julie Evans, 2016, J. Biomed. Semant..

A Semantic Web-based System for Mining Genetic Mutations in Cancer Clinical Trials

J. Heflin, C. Chute, M. Zimmermann, 2015, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Drug Normalization for Cancer Therapeutic and Druggable Genome Target Discovery

Sunghwan Sohn, Christopher G. Chute, Guoqian Jiang, 2015, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Exploring JSON-LD as an Executable Definition of FHIR RDF to Enable Semantics of FHIR Data

Cory M. Endle, Daniel J. Stone, H. Solbrig, 2020, AMIA.

c-Myc Regulates Self-Renewal in Bronchoalveolar Stem Cells

Guoqian Jiang, Yan W. Asmann, Dennis A. Wigle, 2011, PloS one.

Comparing the effects of four common drug classes on the progression of mild cognitive impairment to dementia using electronic health records

J. Pathak, J. Pacheco, L. Rasmussen, 2023, Scientific reports.

A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data

Cui Tao, Stanley M. Huff, Christopher G. Chute, 2013, J. Am. Medical Informatics Assoc..

FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model

Deepak K. Sharma, Guohui Xiao, Nansu Zong, 2022, J. Biomed. Informatics.

Preoperative red cell distribution width and neutrophil-to-lymphocyte ratio predict survival in patients with epithelial ovarian cancer

Chen Wang, Na Hong, G. Jiang, 2017, Scientific Reports.

A Case Study of ICD-11 Anatomy Value Set Extraction from SNOMED CT

Christopher G. Chute, Alan L. Rector, Kent A. Spackman, 2011, International Conference on Biomedical Ontology.

Using Semantic Web technology to support icd-11 textual definitions authoring

Christopher G. Chute, Guoqian Jiang, Harold R. Solbrig, 2011, J. Biomed. Semant..

Profiling ICD-11 Terminological Content Using the Common Terminology Services 2 (CTS2) Standard

Christopher G. Chute, Guoqian Jiang, Harold R. Solbrig, 2014, ICBO.

Formalizing ICD coding rules using Formal Concept Analysis

Christopher G. Chute, Jyotishman Pathak, Guoqian Jiang, 2009, J. Biomed. Informatics.

Viewpoint Paper: Auditing the Semantic Completeness of SNOMED CT Using Formal Concept Analysis

Christopher G. Chute, Guoqian Jiang, C. Chute, 2009, J. Am. Medical Informatics Assoc..

Using an artificial neural network to map cancer common data elements to the biomedical research integrated domain group model in a semi-automated manner

Shengyu Li, Guoqian Jiang, Ryan Benton, 2019, BMC Medical Informatics and Decision Making.

Building a Research-Quality Copy Number Variation Data Repository for Translational Research

Chen Wang, Jared Evans, Guoqian Jiang, 2018, Poly/DMAH@VLDB.

Feasibility of capturing real-world data from health information technology systems at multiple centers to assess cardiac ablation device outcomes: A fit-for-purpose informatics analysis report

Guoqian Jiang, Joseph P. Drozda, Peter A. Noseworthy, 2021, J. Am. Medical Informatics Assoc..

Detecting and Filtering Immune-Related Adverse Events Signal Based on Text Mining and Observational Health Data Sciences and Informatics Common Data Model: Framework Development Study

Nansu Zong, Guoqian Jiang, Nilay Shah, 2020, JMIR medical informatics.

Detecting and Filtering Immune-Related Adverse Events Signal Based on Text Mining and Observational Health Data Sciences and Informatics Common Data Model: Framework Development Study (Preprint)

Hongfang Liu, Andrew Wen, K. Ruddy, 2019 .

A Multi-Institutional Review and Validation of Federated Query Results in Multiple Common Data Models

Guoqian Jiang, Nilay D. Shah, H. Patrick Young, 2018, AMIA.

Optimizing semantic MEDLINE for translational science studies using semantic web technologies

Cui Tao, Christopher G. Chute, Matt-Mouley Bouamrane, 2012, MIXHS '12.

Leveraging Genetic Reports and Electronic Health Records for the Prediction of Primary Cancers: Algorithm Development and Validation Study

Daniel J. Stone, Yiqing Zhao, Chen Wang, 2021, JMIR medical informatics.

Harmonization of Detailed Clinical Models with Clinical Study Data Standards

Stanley M. Huff, Christopher G. Chute, Guoqian Jiang, 2012, Methods of Information in Medicine.

AD-BERT: Using pre-trained language model to predict the progression from mild cognitive impairment to Alzheimer's disease

J. Pathak, J. Pacheco, L. Rasmussen, 2023, J. Biomed. Informatics.

Constructing co-occurrence network embeddings to assist association extraction for COVID-19 and other coronavirus infectious diseases

Feichen Shen, Guoqian Jiang, Hongfang Liu, 2020, J. Am. Medical Informatics Assoc..

Machine Learning in Causal Inference: Application in Pharmacovigilance

Yiqing Zhao, Yue Yu, G. Jiang, 2022, Drug Safety.

Toward cross‐platform electronic health record‐driven phenotyping using Clinical Quality Language

Fei Wang, Yuan Luo, Richard C. Kiefer, 2020, Learning health systems.

Using real-world data from health systems to evaluate the safety and effectiveness of a catheter to treat ischemic ventricular tachycardia

Amit A. Doshi, P. Noseworthy, J. Herrin, 2023, Journal of interventional cardiac electrophysiology : an international journal of arrhythmias and pacing.

Integrating real-world data to assess cardiac ablation device outcomes in a multicenter study using the OMOP common data model for regulatory decisions: implementation and evaluation

Amit A. Doshi, P. Noseworthy, Yue Yu, 2023, JAMIA open.

Shiny FHIR: Empowering Standards-based, Interoperable Clinical Data Applications Using R

Chen Wang, Guoqian Jiang, Naresh Prodduturi, 2017, Summit on Clinical Research Informatics.

Building an i2b2-Based Integrated Data Repository for Cancer Research: A Case Study of Ovarian Cancer Registry

Chen Wang, Zheng Li, Guoqian Jiang, 2016, DMAH@VLDB.

A Multimodal Approach for Identifying Autism Spectrum Disorders in Children

G. Ouyang, Junxia Han, X. Li, 2022, IEEE Transactions on Neural Systems and Rehabilitation Engineering.

Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care

Fei Wang, Yuan Luo, Guoqian Jiang, 2019, MedInfo.

Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data

Yue Yu, Nansu Zong, Sijia Liu, 2020, Int. J. Medical Informatics.

A high throughput semantic concept frequency based approach for patient identification: a case study using type 2 diabetes mellitus clinical notes.

Christopher G Chute, Guoqian Jiang, Cui Tao, 2010, AMIA ... Annual Symposium proceedings. AMIA Symposium.

Single-sample expression-based chemo-sensitivity score improves survival associations independently from genomic mutations for ovarian cancer Patients

Michael T. Zimmermann, M. Zimmermann, Chen Wang, 2016, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network

Asha A. Nair, C. Chute, Hongfang Liu, 2014, J. Biomed. Semant..

Comparing the Effects of Two Semantic Terminology Models on Classification of Clinical Notes: A Study of Heart Murmur Findings

Christopher G. Chute, Guoqian Jiang, C. Chute, 2008, KR-MED.

Modeling and validating HL7 FHIR profiles using semantic web Shape Expressions (ShEx)

Guoqian Jiang, Eric Prud'hommeaux, Joshua C. Mandel, 2017, J. Biomed. Informatics.

Automated Population of an i2b2 Clinical Data Warehouse using FHIR

Guoqian Jiang, Harold R. Solbrig, Shawn N. Murphy, 2018, AMIA.

Using semantic web technologies for the generation of domain templates to support clinical study meta-data standards

Christopher G. Chute, Harold R. Solbrig, Guoqian D Jiang, 2013, SWAT4LS 2013.

Clinical Concept Value Sets and Interoperability in Health Data Analytics

Niklas Elmqvist, Chunhua Weng, Andrea Batch, 2018, AMIA.

Automated learning of domain taxonomies from text using background knowledge

Chunhua Weng, Guoqian Jiang, Julia Hoxha, 2016, J. Biomed. Informatics.

A Consensus-Based Approach for Harmonizing the OHDSI Common Data Model with HL7 FHIR

Harold R. Solbrig, Eric Prud'hommeaux, Richard C. Kiefer, 2017, MedInfo.

Formalizing the International Classification of Functioning, Disability, and Health (ICF) using Formal Concept Analysis (FCA).

Christopher G Chute, Guoqian Jiang, Guergana K Savova, 2007, AMIA ... Annual Symposium proceedings. AMIA Symposium.

Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research

Jie Xu, Joshua C. Denny, Jyotishman Pathak, 2015, J. Am. Medical Informatics Assoc..

ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model

Yue Yu, Guoqian Jiang, Andrew Wen, 2019, J. Biomed. Informatics.

Leveraging Genetic Reports and Electronic Health Records for the Prediction of Primary Cancers: Algorithm Development and Validation Study

Daniel J. Stone, Yiqing Zhao, Chen Wang, 2020, JMIR medical informatics.

Leveraging Genetic Reports and Electronic Health Records for the Prediction of Primary Cancers: Algorithm Development and Validation Study (Preprint)

Daniel J. Stone, Yiqing Zhao, Chen Wang, 2020 .

Using Semantic Web Techologies for the Generation of Domain Templates to Support Clinical Study Meta-Data

Christopher G. Chute, Guoqian Jiang, Harold R. Solbrig, 2013, SWAT4LS.

Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records

Nansu Zong, Guoqian Jiang, Hongfang Liu, 2020, JCO clinical cancer informatics.

Shiny FHIR: An Integrated Framework Leveraging Shiny R and HL7 FHIR to Empower Standards-Based Clinical Data Applications

Chen Wang, Guoqian Jiang, Naresh Prodduturi, 2017, MedInfo.

Adverse Drug Events-based Tumor Stratification for Ovarian Cancer Patients Receiving Platinum Therapy

Michael T. Zimmermann, C. Chute, Chen Wang, 2015, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Adverse Drug Event-based Stratification of Tumor Mutations: A Case Study of Breast Cancer Patients Receiving Aromatase Inhibitors

Chen Wang, Christopher G. Chute, Guoqian Jiang, 2014, AMIA.

Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma

Ning Zhang, Li Hou, Hongfang Liu, 2018, BMC Medical Informatics and Decision Making.

Considerations for Improving the Portability of Electronic Health Record-Based Phenotype Algorithms

Fei Wang, Yuan Luo, Jyotishman Pathak, 2019, AMIA.

Detecting and Filtering Immune-Related Adverse Events Signal Based on Text Mining and Observational Health Data Sciences and Informatics Common Data Model: Framework Development Study

Hongfang Liu, A. Mansfield, Nansu Zong, 2020, JMIR medical informatics.

Detecting and Filtering Immune-Related Adverse Events Signal Based on Text Mining and Observational Health Data Sciences and Informatics Common Data Model: Framework Development Study (Preprint)

Hongfang Liu, Nansu Zong, Andrew Wen, 2019 .

Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data

Hongfang Liu, Sunghwan Sohn, Feichen Shen, 2018, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

A computational framework for converting textual clinical diagnostic criteria into the quality data model

Hongfang Liu, Dingcheng Li, Yue Yu, 2016, J. Biomed. Informatics.

Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing

Hongfang Liu, Dingcheng Li, Christopher G. Chute, 2015, BioNLP@IJCNLP.

Standardizing adverse drug event reporting data

Hongfang Liu, Dingcheng Li, Guoqian Jiang, 2014, J. Biomed. Semant..

CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping.

Richard C. Kiefer, Daniel J. Stone, Hongfang Liu, 2021, AMIA ... Annual Symposium proceedings. AMIA Symposium.

A Framework of Knowledge Integration and Discovery for Supporting Pharmacogenomics Target Predication of Adverse Drug Events: A Case Study of Drug-Induced Long QT Syndrome

Christopher G. Chute, Guoqian Jiang, Qian Zhu, 2013, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Leveraging Terminology Services for Extract-Transform-Load Processes: A User-Centered Approach

Hongfang Liu, Guoqian Jiang, Scott M. Brue, 2016, AMIA.

Automated learning of domain taxonomies from text using background knowledge

C. Weng, Julia Hoxha, Guoqian Jiang, 2016, J. Biomed. Informatics.

Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups

Christopher G. Chute, Guoqian Jiang, Harold R. Solbrig, 2012, J. Am. Medical Informatics Assoc..

Quality evaluation of cancer study Common Data Elements using the UMLS Semantic Network

Christopher G. Chute, Guoqian Jiang, Harold R. Solbrig, 2011, J. Biomed. Informatics.

Viewpoint Paper: Auditing the Semantic Completeness of SNOMED CT Using Formal Concept Analysis

C. Chute, Guoqian Jiang, 2009, J. Am. Medical Informatics Assoc..

A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data

Cui Tao, Stanley M. Huff, Christopher G. Chute, 2012, 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology.

A Semantic Web-Based Approach for Harvesting Multilingual Textual Definitions from Wikipedia to Support ICD-11 Revision

Christopher G. Chute, Guoqian Jiang, Harold R. Solbrig, 2013, VDOS+DO@ICBO.

Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network

Jian Su, Cui Tao, Hongfang Liu, 2014, Journal of Biomedical Semantics.

Mining severe drug-drug interaction adverse events using Semantic Web technologies: a case study

Hongfang Liu, Christopher G. Chute, Guoqian Jiang, 2014, BioData Mining.

Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events

Rebecca Racz, Yu Lin, Qian Zhu, 2016, Journal of Biomedical Semantics.