S. Nair

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models

D. Hassabis, Stig Petersen, Pushmeet Kohli, 2021, Nucleic Acids Res..

PDBe-KB: collaboratively defining the biological context of structural data

Roland L. Dunbrack, Thomas A. Hopf, Leandro G. Radusky, 2021, Nucleic Acids Res..

Comprehensive Collection and Prediction of ABC Transmembrane Protein Structures in the AI Era of Structural Biology

I. Sillitoe, H. Tordai, T. Hegedűs, 2022, bioRxiv.

Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data

David R. Armstrong, Grisell Díaz Leines, S. Velankar, 2023, bioRxiv.

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources

Andrew M. Waterhouse, D. Hassabis, S. Salzberg, 2022, bioRxiv.

PDBe and PDBe‐KB: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education

David R. Armstrong, Grisell Díaz Leines, G. Kleywegt, 2022, Protein science : a publication of the Protein Society.

PDBImages: a command-line tool for automated macromolecular structure visualization

S. Velankar, D. Sehnal, A. Midlik, 2023, Bioinformatics.

PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank

S. Velankar, O. Smart, L. Pravda, 2023, bioRxiv.

AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences

D. Hassabis, E. Birney, Augustin Zídek, 2023, Nucleic acids research.

Harnessing the 3D‐Beacons Network: A Comprehensive Guide to Accessing and Displaying Protein Structure Data

S. Velankar, M. Váradi, S. Nair, 2024, Current protocols.