Amatur Rahman

The K-mer File Format: a standardized and compact disk representation of sets of k-mers

R. Chikhi, P. Peterlongo, S. Deorowicz, 2022, Bioinform..

Representation of k-mer sets using spectrum-preserving string sets

Amatur Rahman, Paul Medvedev, P. Medvedev, 2020, bioRxiv.

kRISP-meR: A Reference-free Guide-RNA Design Tool for CRISPR/Cas9

Mahmudur Rahman Hera, Amatur Rahman, Atif Rahman, 2019, bioRxiv.

Disk compression of k-mer sets

Amatur Rahman, Paul Medvedev, Rayan Chikhi, 2021, WABI.

Compression algorithm for colored de Bruijn graphs

P. Medvedev, Y. Dufresne, Amatur Rahman, 2023, bioRxiv.

Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphs

P. Medvedev, Amatur Rahman, 2022, Genome Research.

Uncovering hidden assembly artifacts: when unitigs are not safe and bidirected graphs are not helpful

P. Medvedev, Amatur Rahman, 2022, bioRxiv.