C. V. Jongeneel

发表

Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform

Jiawei Han, Saurabh Sinha, Omar N Sobh, 2019, bioRxiv.

eVOC: a controlled vocabulary for unifying gene expression data.

C. V. Jongeneel, D. Smedley, J. Kelso, 2003, Genome research.

An atlas of human gene expression from massively parallel signature sequencing (MPSS).

C. V. Jongeneel, Brian J. Stevenson, R. Strausberg, 2005, Genome research.

Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing

C. V. Jongeneel, Brian J. Stevenson, R. Strausberg, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma

C. V. Jongeneel, Brian J. Stevenson, A. Valsesia, 2011, Nature Genetics.

Network-Guided Analysis of Genes with Altered Somatic Copy Number and Gene Expression Reveals Pathways Commonly Perturbed in Metastatic Melanoma

Ioannis Xenarios, C. V. Jongeneel, Stylianos E. Antonarakis, 2011, PloS one.

Nineteen additional unpredicted transcripts from human chromosome 21.

C. V. Jongeneel, Christian Iseli, Brian J. Stevenson, 2002, Genomics.

Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25.

C. V. Jongeneel, Brian J. Stevenson, A. Camargo, 2003, Gene.

Making sense of score statistics for sequence

C. V. Jongeneel, M. Pagni, 2001 .

Identification of the gonad-specific anion transporter SLCO6A1 as a cancer/testis (CT) antigen expressed in human lung cancer.

C. V. Jongeneel, A. Simpson, Yao-Tseng Chen, 2004, Cancer immunity.

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags

Marcio Luis Acencio, C. V. Jongeneel, John Quackenbush, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Swiss EMBnet node web server

Vassilios Ioannidis, C. V. Jongeneel, C. Victor Jongeneel, 2003, Nucleic Acids Res..

Making Sense of Score Statistics for Sequence Alignments

C. V. Jongeneel, C. Victor Jongeneel, Marco Pagni, 2001, Briefings Bioinform..

Searching the Expressed Sequence Tag (EST) Databases: Panning for Genes

C. V. Jongeneel, C. Victor Jongeneel, C. Jongeneel, 2000, Briefings Bioinform..

Gene expression variation and expression quantitative trait mapping of human chromosome 21 genes.

C. V. Jongeneel, Robert Lyle, Emmanouil T Dermitzakis, 2005, Human molecular genetics.

ESTScan: A Program for Detecting, Evaluating, and Reconstructing Potential Coding Regions in EST Sequences

C. V. Jongeneel, Christian Iseli, Philipp Bucher, 1999, ISMB.

Genome-wide analysis of cancer/testis gene expression

Oliver Hofmann, C. V. Jongeneel, Piero Carninci, 2008, Proceedings of the National Academy of Sciences.

Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome

C. V. Jongeneel, A. Simpson, Yao-Tseng Chen, 2006, Genes, chromosomes & cancer.

Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort

C. V. Jongeneel, Sven Bergmann, Zoltán Kutalik, 2012, BMC Genomics.

Rapid evolution of cancer/testis genes on the X chromosome

C. V. Jongeneel, Brian J. Stevenson, A. Simpson, 2007, BMC Genomics.

Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time

C. V. Jongeneel, Philipp Bucher, Cédric Notredame, 2007, BMC Genomics.

Identification of CT46/HORMAD1, an immunogenic cancer/testis antigen encoding a putative meiosis-related protein.

C. V. Jongeneel, Christian Iseli, Brian J. Stevenson, 2005, Cancer immunity.

The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods

C. V. Jongeneel, Desmond G. Higgins, Iain M. Wallace, 2007, Nucleic Acids Res..

Numerous potentially functional but non-genic conserved sequences on human chromosome 21

C. V. Jongeneel, Stylianos E. Antonarakis, Emmanouil T. Dermitzakis, 2002, Nature.

Digital expression profiles of human endogenous retroviral families in normal and cancerous tissues.

C. V. Jongeneel, Peter Sperisen, Y. Lebedev, 2004, Cancer immunity.

C. V. Jongeneel, Christian Iseli, Felix Naef, 2006, BMC Genomics.

Indexing Strategies for Rapid Searches of Short Words in Genome Sequences

C. V. Jongeneel, P. Bucher, C. Iseli, 2007, PloS one.

Identification of tumor-associated antigens by large-scale analysis of genes expressed in human colorectal cancer.

C. V. Jongeneel, Brian J. Stevenson, D. Speiser, 2008, Cancer immunity.

Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data

C. V. Jongeneel, Christian Iseli, Brian J. Stevenson, 2006, Breast Cancer Research.

trome, trEST and trGEN: databases of predicted protein sequences

C. V. Jongeneel, Christian Iseli, Brian J. Stevenson, 2004, Nucleic Acids Res..

trEST, trGEN and Hits: access to databases of predicted protein sequences

C. V. Jongeneel, Christian Iseli, Philipp Bucher, 2001, Nucleic Acids Res..

Long-range heterogeneity at the 3' ends of human mRNAs.

C. V. Jongeneel, Kenneth H Buetow, Christian Iseli, 2002, Genome research.

Modeling sequencing errors by combining Hidden Markov models

C. V. Jongeneel, Christian Iseli, Claudio Lottaz, 2003, ECCB.

MyHits: improvements to an interactive resource for analyzing protein sequences

Olivier Martin, Vassilios Ioannidis, C. V. Jongeneel, 2007, Nucleic Acids Res..

Use of transcriptome data to unravel the fine structure of genes involved in sepsis.

C. V. Jongeneel, Christian Iseli, Brian J. Stevenson, 2003, The Journal of infectious diseases.

Identification of cancer/testis-antigen genes by massively parallel signature sequencing

C. V. Jongeneel, Brian J. Stevenson, R. Strausberg, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Indexing Strategies for Rapid Searches of Short Words in Genome Sequences

C. V. Jongeneel, P. Bucher, C. Iseli, 2007, PloS one.

Adenovirus presentant une anomalie de la replication pour l'immunotherapie du cancer

C. V. Jongeneel, D. Rimoldi, P. Romero, 1997 .

EuroDia: a beta-cell gene expression resource

C. V. Jongeneel, S. Bergmann, I. Xenarios, 2010 .

MyHits: a new interactive resource for protein annotation and domain identification

Vassilios Ioannidis, C. V. Jongeneel, Monique Zahn-Zabal, 2004, Nucleic Acids Res..