Wing-Kin Sung

Wing-Kin Sung, Wah-Heng Lee, W. Sung, 2003, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003.

On finding the Adams consensus tree

Wing-Kin Sung, Jesper Jansson, Zhaoxian Li, 2017, Inf. Comput..

An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping

Guoliang Li, Wing-Kin Sung, Qiangwei Zhou, 2018, BMC Bioinformatics.

Improving the Efficiency and Accuracy of aligning Erroneous mRNAS

Wing-Kin Sung, Sm Yiu, Tw Lam, 2004 .

Improved Approximate String Matching Using Compressed Suffix Data Structures

Tak Wah Lam, Wing-Kin Sung, Swee-Seong Wong, 2005, ISAAC.

A Decomposition Theorem for Maximum Weight Bipartite Matchings with Applications to Evolutionary Trees

Ming-Yang Kao, Tak Wah Lam, Hing-Fung Ting, 1999, ESA.

Learning Gene Network Using Conditional Dependence

Wing-Kin Sung, Tie-Fei Liu, 2006, 2006 18th IEEE International Conference on Tools with Artificial Intelligence (ICTAI'06).

All-Cavity Maximum Matchings

Ming-Yang Kao, Tak Wah Lam, Hing-Fung Ting, 1997, ISAAC.

Adaptive Control of Hybridization Noise in Dna Sequencing-by-hybridization

Franco P. Preparata, Hon Wai Leong, Wing-Kin Sung, 2005, J. Bioinform. Comput. Biol..

BATVI: Fast, sensitive and accurate detection of virus integrations

Wing-Kin Sung, Chandana Tennakoon, W. Sung, 2017, BMC Bioinformatics.

The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning

Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung, 2009, BICoB.

Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs

Siu-Ming Yiu, Ming-Yang Kao, Tak Wah Lam, 2003, J. Comput. Biol..

Computing the Rooted Triplet Distance Between Phylogenetic Networks

Wing-Kin Sung, Jesper Jansson, Ramesh Rajaby, 2019, Algorithmica.

Construction of online catalog topologies using decision trees

Siu-Ming Yiu, David Wai-Lok Cheung, Tak Wah Lam, 2000, Proceedings Second International Workshop on Advanced Issues of E-Commerce and Web-Based Information Systems. WECWIS 2000.

Default-Sensitive PreProcessings for Finding Maxima

Ming-Yang Kao, Tak Wah Lam, Hing-Fung Ting, 1998, CATS.

Model gene network by semi-fixed Bayesian network

Ankush Mittal, Wing-Kin Sung, Tie-Fei Liu, 2006, Expert Syst. Appl..

Compressed random access memory pdf

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2010, ArXiv.

Algorithms in Bioinformatics: A Practical Introduction

Wing-Kin Sung, 2020 .

Constructing a Smallest Refining Galled Phylogenetic Network

Wing-Kin Sung, Jesper Jansson, Trinh N. D. Huynh, 2005, RECOMB.

Effective Algorithms for Tag Snp Selection

Yi Li, Ankush Mittal, Wing-Kin Sung, 2005, J. Bioinform. Comput. Biol..

PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data

Wing-Kin Sung, Chia-Lin Wei, Pramila Nuwantha Ariyaratne, 2006, BMC Bioinformatics.

On Finding the Adams Consensus Tree

Wing-Kin Sung, Jesper Jansson, Zhaoxian Li, 2015, STACS.

Approximate string matching using compressed suffix arrays

Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung, 2006, Theor. Comput. Sci..

Improved Algorithms for Maximum Agreement and Compatible Supertrees

Wing-Kin Sung, Viet Tung Hoang, 2009, Algorithmica.

Bayesian Network Modeling of Transcription Factor Binding Sites: A Tutorial

Ankush Mittal, Wing-Kin Sung, Vipin Narang, 2007 .

Fast algorithms for computing the tripartition-based distance between phylogenetic networks

Wing-Kin Sung, C. Thach Nguyen, Nguyen Bao Nguyen, 2005, J. Comb. Optim..

Simultaneously Learning DNA Motif Along with Its Position and Sequence Rank Preferences Through Expectation Maximization Algorithm

Wing-Kin Sung, ZhiZhuo Zhang, Edwin Cheung, 2013, J. Comput. Biol..

Algorithms for combining rooted triplets into a galled phylogenetic network

Wing-Kin Sung, Jesper Jansson, W. Sung, 2005, SODA '05.

See-Kiong Ng, Wing-Kin Sung, Soon-Heng Tan, 2006, BMC Bioinformatics.

Constructing the R* Consensus Tree of Two Trees in Subcubic Time

Wing-Kin Sung, Jesper Jansson, 2010, ESA.

A Linear Size Index for Approximate Pattern Matching

Tak Wah Lam, Siu-Lung Tam, Wing-Kin Sung, 2006, CPM.

A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment

See-Kiong Ng, Wing-Kin Sung, Jesper Jansson, 2004, WABI.

CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences

Limsoon Wong, Wing-Kin Sung, Swee-Seong Wong, 2007, 2007 IEEE 23rd International Conference on Data Engineering.

Increasing confidence of protein-protein interactomes.

Mong-Li Lee, Limsoon Wong, See-Kiong Ng, 2006, Genome informatics. International Conference on Genome Informatics.

Space Efficient Indexes for String Matching with Don't Cares

Siu-Ming Yiu, Tak Wah Lam, Siu-Lung Tam, 2007, ISAAC.

Breaking a Time-and-Space Barrier in Constructing Full-Text Indices

Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung, 2009, SIAM J. Comput..

Exploiting Indirect Neighbours and Topological Weight to Predict Protein Function from Protein-Protein Interactions

Limsoon Wong, Wing-Kin Sung, Hon Nian Chua, 2006, BioDM.

ConstrainedMotif: a periodicity constraint based algorithm to predict cell-cycle associated promoter motifs using time-course gene expression data

Karuturi R. Krishna Murthy, Wing-Kin Sung, Yingren Liu, 2005, Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05).

Computing a Smallest Multilabeled Phylogenetic Tree from Rooted Triplets

Sylvain Guillemot, Wing-Kin Sung, Jesper Jansson, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Improved Algorithms for Constructing Consensus Trees

Wing-Kin Sung, Jesper Jansson, Chuanqi Shen, 2013, SODA.

Learning Chromatin Interaction Using Hi-C Datasets

Wing-Kin Sung, W. Sung, 2019, Encyclopedia of Bioinformatics and Computational Biology.

A Faster and Unifying Algorithm for Comparing Trees

Ming-Yang Kao, Tak Wah Lam, Hing-Fung Ting, 2000, CPM.

Fixed Parameter Polynomial Time Algorithms for Maximum Agreement and Compatible Supertrees pdf

Wing-Kin Sung, Viet Tung Hoang, 2008, STACS.

Algorithms for Building Consensus MUL-trees

Wing-Kin Sung, Yun Cui, Jesper Jansson, 2011, ISAAC.

Compressed Indexes for Approximate String Matching

Tak Wah Lam, Siu-Lung Tam, Wing-Kin Sung, 2006, ESA.

Structural Alignment of RNA with Complex Pseudoknot Structure

Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung, 2009, WABI.

The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries

Siu-Ming Yiu, Francis Y. L. Chin, Wing-Kin Sung, 2007, WABI.

Local gapped subforest alignment and its application in finding RNA structural motifs.

Wing-Kin Sung, Jesper Jansson, Ngo Trung Hieu, 2006 .

Maximum Agreement Supertree

Wing-Kin Sung, 2008, Encyclopedia of Algorithms.

Non-shared edges and nearest neighbor interchanges revisited

Siu-Ming Yiu, Ming-Yang Kao, Wing-Kai Hon, 2004, Inf. Process. Lett..

Detection of generic spaced motifs using submotif pattern mining

Siu-Ming Yiu, Kanagasabai Rajaraman, Wing-Kin Sung, 2007, Bioinform..

Faster Algorithms for 1-Mappability of a Sequence

Costas S. Iliopoulos, Solon P. Pissis, Panagiotis Charalampopoulos, 2017, COCOA.

Learning Gene Network Using Time-delayed Bayesian Network

Ankush Mittal, Wing-Kin Sung, Tie-Fei Liu, 2006, Int. J. Artif. Intell. Tools.

An efficient strategy for extensive integration of diverse biological data for protein function prediction

Limsoon Wong, Wing-Kin Sung, Hon Nian Chua, 2007, Bioinform..

Reconstructing Recombination Network from Sequence Data: The Small Parsimony Problem

Wing-Kin Sung, Louxin Zhang, C. Thach Nguyen, 2007, IEEE ACM Trans. Comput. Biol. Bioinform..

Structural Alignment of RNA with Complex Pseudoknot Structure

Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung, 2011, J. Comput. Biol..

Clustering-Based Approach for Predicting Motif Pairs from protein Interaction Data

Siu-Ming Yiu, Francis Y. L. Chin, Man-Hung Siu, 2009, J. Bioinform. Comput. Biol..

Succinct Data Structures for Searchable Partial Sums

Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung, 2003, ISAAC.

Determining the Consistency of Resolved Triplets and Fan Triplets

Andrzej Lingas, Wing-Kin Sung, Jesper Jansson, 2017, RECOMB.

Computing Asymmetric Median Tree of Two Trees via Better Bipartite Matching Algorithm

Wing-Kin Sung, Ramesh Rajaby, 2017, IWOCA.

Finding Short Right-Hand-on-the-Wall Walks in Graphs

Kunihiko Sadakane, Wing-Kin Sung, Stefan Dobrev, 2005, SIROCCO.

Brief Overview of Bioinformatics Activities in Singapore

Chee Keong Kwoh, Limsoon Wong, See-Kiong Ng, 2009, PLoS Comput. Biol..

Detection of palindromes in DNA sequences using periodicity transform

R. Gupta, Wing-Kin Sung, A. Mittal, 2004, IEEE International Workshop on Biomedical Circuits and Systems, 2004..

Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines

Wing-Kin Sung, Arun Krishnan, Kuo-Bin Li, 2005, BMC Bioinformatics.

International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions

Limsoon Wong, Wing-Kin Sung, Frank Eisenhaber, 2013, BMC Systems Biology.

A mutation-sensitive approach for locating conserved gene pairs between related species

Siu-Ming Yiu, Prudence W. H. Wong, Tak Wah Lam, 2004, Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering.

Simultaneously Learning DNA Motif along with Its Position and Sequence Rank Preferences through EM Algorithm

Wing-Kin Sung, ZhiZhuo Zhang, Edwin Cheung, 2012, RECOMB.

Discovery of transcription factor binding sites through integration of generic motif finders

Siu-Ming Yiu, Wing-Kin Sung, Edward Wijaya, 2007 .

Algorithms for Combining Rooted Triplets into a Galled Phylogenetic Network

Wing-Kin Sung, Jesper Jansson, Nguyen Bao Nguyen, 2006, SIAM J. Comput..

Automatic construction of online catalog topologies

Siu-Ming Yiu, David Wai-Lok Cheung, Tak Wah Lam, 2002, IEEE Trans. Syst. Man Cybern. Part C.

A better gap penalty for pairwise SVM

Wing-Kin Sung, Hon Nian Chua, W. Sung, 2005, APBC.

Ultra-succinct representation of ordered trees

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2007, SODA '07.

Pem: a general statistical approach for identifying differentially expressed genes in time-course cDNA microarray experiment without replicate.

Xu Han, Lin Feng, Wing-Kin Sung, 2006, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

Computational modeling of oligonucleotide positional densities for human promoter prediction

Ankush Mittal, Wing-Kin Sung, Vipin Narang, 2005, Artif. Intell. Medicine.

The Enhanced Double Digest Problem for DNA Physical Mapping

Ming-Yang Kao, Wing-Kin Sung, Jared Samet, 2003, J. Comb. Optim..

Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences

Wing-Kin Sung, Niranjan Nagarajan, Song Gao, 2011, RECOMB.

Breaking a time-and-space barrier in constructing full-text indices

Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung, 2003, 44th Annual IEEE Symposium on Foundations of Computer Science, 2003. Proceedings..

Improved Approximate String Matching Using Compressed Suffix Data Structures

Tak Wah Lam, Wing-Kin Sung, Swee-Seong Wong, 2007, Algorithmica.

On All-Substrings Alignment Problems

Wing-Kai Hon, Wing-Kin Sung, Wei Fu, 2003, COCOON.

Application of Bayesian Network in Drug Discovery and Development Process

Wing-Kin Sung, Arunkumar Chinnasamy, Sudhanshu Patwardhan, 2007 .

The Enhanced Double Digest Problem for DNA Physical Mapping

Ming-Yang Kao, Wing-Kin Sung, Jared Samet, 2000, SWAT.

An Even Faster and More Unifying Algorithm for Comparing Trees via Unbalanced Bipartite Matchings

Ming-Yang Kao, Tak Wah Lam, Hing-Fung Ting, 2001, J. Algorithms.

Application of Bayesian Network in Learning Gene Network

Ankush Mittal, Wing-Kin Sung, Tie-Fei Liu, 2007 .

Succinct data structures for Searchable Partial Sums with optimal worst-case performance

Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung, 2011, Theor. Comput. Sci..

Reconstructing k-Reticulated Phylogenetic Network from a Set of Gene Trees

Siu-Ming Yiu, Wing-Kai Hon, Kunihiko Sadakane, 2013, ISBRA.

General techniques for comparing unrooted evolutionary trees

Ming-Yang Kao, Tak Wah Lam, Hing-Fung Ting, 1997, STOC '97.

Polynomial-Time Algorithms for Building a Consensus MUL-Tree

Wing-Kin Sung, Yun Cui, Jesper Jansson, 2012, J. Comput. Biol..

Computing the Maximum Agreement of Phylogenetic Networks

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2004, CATS.

Inferring a Level-1 Phylogenetic Network from a Dense Set of Rooted Triplets

Wing-Kin Sung, Jesper Jansson, W. Sung, 2004, COCOON.

Constraint based method for finding motifs in DNA sequences

Chew Lim Tan, Wing-Kin Sung, Sam Yuan Sung, 2004, Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering.

Allowing mismatches in anchors for wholw genome alignment: Generation and effectiveness

Siu-Ming Yiu, Prudence W. H. Wong, Tak Wah Lam, 2005, APBC.

BatMis: a fast algorithm for k-mismatch mapping

Wing-Kin Sung, Chandana Tennakoon, Rikky W. Purbojati, 2012, Bioinform..

Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences

Wing-Kin Sung, Niranjan Nagarajan, Song Gao, 2011, J. Comput. Biol..

Compressed indexing and local alignment of DNA

Siu-Ming Yiu, Tak Wah Lam, Siu-Lung Tam, 2008, Bioinform..

A Faster Construction of Phylogenetic Consensus Trees pdf

Gad M. Landau, Pawel Gawrychowski, Wing-Kin Sung, 2017, ArXiv.

Minimal Phylogenetic Supertrees and Local Consensus Trees

Wing-Kin Sung, Jesper Jansson, W. Sung, 2018, MFCS.

RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints

Wing-Kin Sung, Wah-Heng Lee, 2008, J. Comput. Biol..

CENTDIST: discovery of co-associated factors by motif distribution

Wing-Kin Sung, ZhiZhuo Zhang, Edwin Cheung, 2011, Nucleic Acids Res..

More efficient periodic traversal in anonymous undirected graphs pdf

Kunihiko Sadakane, Jurek Czyzowicz, David Ilcinkas, 2012, Theor. Comput. Sci..

Faster Algorithms for Computing the R* Consensus Tree

Siu-Ming Yiu, Wing-Kin Sung, Jesper Jansson, 2014, Algorithmica.

More efficient periodic traversal in anonymous undirected graphs

Kunihiko Sadakane, Jurek Czyzowicz, David Ilcinkas, 2009, Theoretical Computer Science.

Allowing Mismatches In Anchors For Whole Genome Alignment

Wing-Kin Sung, Sm Yiu, Tw Lam, 2007 .

Approximate String Matching Using Compressed Suffix Arrays

Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung, 2004, CPM.

3D Chromosome Modeling with Semi-Definite Programming and Hi-C Data

Kim-Chuan Toh, Guoliang Li, Wing-Kin Sung, 2013, J. Comput. Biol..

Video Retrieval by Context-Based Interpretation of Time-to-Collision Descriptors

Ankush Mittal, Wing-Kin Sung, 2003, CAIP.

Unbalanced and Hierarchical Bipartite Matchings with Applications to Labeled Tree Comparison

Ming-Yang Kao, Tak Wah Lam, Hing-Fung Ting, 2000, ISAAC.

Subtree Transfer Distance For Degree-D Phylogenies

Siu-Ming Yiu, Ming-Yang Kao, Wing-Kai Hon, 2004, Int. J. Found. Comput. Sci..

Inferring phylogenetic relationships avoiding forbidden rooted triplets

Wing-Kin Sung, Jesper Jansson, Trinh N. D. Huynh, 2006, APBC.

CS5238 Combinatorial Methods in Bioinformatics 2006/2007 Semester 1 Lecture 6: Repeat nding

Wing-Kin Sung, 2007 .

Fast Relative Lempel-Ziv Self-index for Similar Sequences

Kunihiko Sadakane, Wing-Kin Sung, Huy Hoang Do, 2012, FAW-AAIM.

Greedy Consensus Tree and Maximum Greedy Consensus Tree Problems

Wing-Kin Sung, 2019, WALCOM.

A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data

Wing-Kin Sung, Yijun Ruan, Vinsensius B. Vega, 2008, ICCS.

Rooted Maximum Agreement Supertrees

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2004, LATIN.

Association mapping via regularized regression analysis of single-nucleotide-polymorphism haplotypes in variable-sized sliding windows.

Wing-Kin Sung, Yi Li, Jian Jun Liu, 2007, American journal of human genetics.

Rooted Maximum Agreement Supertrees

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2004, Algorithmica.

CWig: compressed representation of Wiggle/BedGraph format

Wing-Kin Sung, Huy Hoang Do, W. Sung, 2014, Bioinform..

Partial convex recolorings of trees and galled networks: Tight upper and lower bounds

Sagi Snir, Shlomo Moran, Wing-Kin Sung, 2011, TALG.

Discovering novel interacting motif pairs from large protein-protein interaction datasets

See-Kiong Ng, Wing-Kin Sung, Soon-Heng Tan, 2004, Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering.

Predicting RNA secondary structures with arbitrary pseudoknots by maximizing the number of stacking pairs

Siu-Ming Yiu, Ming-Yang Kao, Tak Wah Lam, 2001, Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001).

Reconstructing Recombination Network from Sequence Data: The Small Parsimony Problem

Wing-Kin Sung, Louxin Zhang, Nguyen Bao Nguyen, 2007, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Off-line and on-line algorithms for closed string factorization

Costas S. Iliopoulos, William F. Smyth, Wing-Kin Sung, 2019, Theor. Comput. Sci..

D-SLIMMER: domain-SLiM interaction motifs miner for sequence based protein-protein interaction data.

See-Kiong Ng, Wing-Kin Sung, Willy Hugo, 2011, Journal of proteome research.

Maximum Agreement Supertree

Wing-Kin Sung, Jesper Jansson, 2016, Encyclopedia of Algorithms.

Using indirect protein interactions for the prediction of Gene Ontology functions

Limsoon Wong, Wing-Kin Sung, Hon Nian Chua, 2007, BMC Bioinformatics.

Tag SNP selection by brute-force and heuristic algorithms

Ankush Mittal, Wing-Kin Sung, Tie-Fei Liu, 2003, German Conference on Bioinformatics.

An Optimal Algorithm for Building the Majority Rule Consensus Tree

Wing-Kin Sung, Jesper Jansson, Chuanqi Shen, 2013, RECOMB.

LocalMotif - An In-Silico Tool for Detecting Localized Motifs in Regulatory Sequences

Ankush Mittal, Wing-Kin Sung, Vipin Narang, 2006, 2006 18th IEEE International Conference on Tools with Artificial Intelligence (ICTAI'06).

An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

Feng Lin, Wing-Kin Sung, Han Xu, 2008, Bioinform..

News sports video shot classification with sports play field and motion features

Qi Tian, Sheng Gao, Wing-Kin Sung, 2004, 2004 International Conference on Image Processing, 2004. ICIP '04..

Computing a Smallest Multi-labeled Phylogenetic Tree from Rooted Triplets

Sylvain Guillemot, Wing-Kin Sung, Jesper Jansson, 2009, ISAAC.

Practical aspects of Compressed Suffix Arrays and FM-Index in Searching DNA Sequences

Siu-Ming Yiu, Wing-Kai Hon, Tak Wah Lam, 2004, ALENEX/ANALC.

Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data

Kim-Chuan Toh, Guoliang Li, Wing-Kin Sung, 2013, RECOMB.

Exploiting indirect neighbours and topological weight to predict protein function from protein--protein interactions

Limsoon Wong, Wing-Kin Sung, Hon Nian Chua, 2006 .

Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree

Wing-Kin Sung, Jesper Jansson, Chuanqi Shen, 2013, WABI.

CS5238 Combinatorial methods in bioinformatics 2004/2005 Semester 1 Lecture 4: Peptide Sequencing - September 3, 2004

Wing-Kin Sung, Lee Terk Shuen, Lee Ping Alison, 2005 .

Compact Data structures for Big Data (NII Shonan Meeting 2013-10)

Kunihiko Sadakane, Wing-Kin Sung, W. Sung, 2013, NII Shonan Meeting Report.

Protein Structure and Fold Prediction Using Tree-augmented Naïve Bayesian Classifier

Ankush Mittal, Wing-Kin Sung, Arunkumar Chinnasamy, 2005, J. Bioinform. Comput. Biol..

Ultra-succinct representation of ordered trees with applications

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2012, J. Comput. Syst. Sci..

Algorithms for Next-Generation Sequencing

Wing-Kin Sung, 2017 .

Identifying differentially expressed genes in Time-Course microarray Experiment without Replicate

Xu Han, Lin Feng, Wing-Kin Sung, 2007, J. Bioinform. Comput. Biol..

G-PRIMER: greedy algorithm for selecting minimal primer set

Wing-Kin Sung, Kuo-Bin Li, Jiren Wang, 2004, Bioinform..

The mutated subsequence problem and locating conserved genes

Siu-Ming Yiu, Prudence W. H. Wong, Tak Wah Lam, 2005, Bioinform..

Improved Algorithms for Constructing Consensus Trees

Wing-Kin Sung, Jesper Jansson, Chuanqi Shen, 2013, SODA.

Protein Structure and Fold Prediction Using Tree-Augmented Bayesian Classifier

Ankush Mittal, Wing-Kin Sung, Arunkumar Chinnasamy, 2004, Pacific Symposium on Biocomputing.

Indexed Approximate String Matching

Wing-Kin Sung, 2016, Encyclopedia of Algorithms.

Inferring a level-1 phylogenetic network from a dense set of rooted triplets

Wing-Kin Sung, Jesper Jansson, 2006, Theor. Comput. Sci..

Computing the Unrooted Maximum Agreement Subtree in Sub-quadratic Time

Tak Wah Lam, Hing-Fung Ting, Wing-Kin Sung, 1996, Nord. J. Comput..

The 24th International Conference on genome Informatics, Giw2013, in Singapore

Limsoon Wong, Wing-Kin Sung, Frank Eisenhaber, 2013, J. Bioinform. Comput. Biol..

Computing the Maximum Agreement of Phylogenetic Networks

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2004, Electron. Notes Theor. Comput. Sci..

Compressed Indexes for Approximate String Matching

Tak Wah Lam, Siu-Lung Tam, Wing-Kin Sung, 2010, Algorithmica.

Fast relative Lempel-Ziv self-index for similar sequences

Kunihiko Sadakane, Wing-Kin Sung, Huy Hoang Do, 2014, Theor. Comput. Sci..

CRAM: Compressed Random Access Memory

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2010, ICALP.

An Experimental Study of Compressed Indexing and Local Alignments of DNA

Siu-Ming Yiu, Tak Wah Lam, Siu-Lung Tam, 2007, COCOA.

LOMA: A fast method to generate efficient tagged-random primers despite amplification bias of random PCR on pathogens

Wing-Kin Sung, Lance D. Miller, Wah-Heng Lee, 2008, BMC Bioinformatics.

A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences through Alignment

See-Kiong Ng, Wing-Kin Sung, Jesper Jansson, 2006, Algorithmica.

Bioinformatics Applications in Genomics

Wing-Kin Sung, W. Sung, 2012, Computer.

Spectrum-Based De Novo Repeat Detection in Genomic Sequences

Franco P. Preparata, Wing-Kin Sung, Louxin Zhang, 2008, J. Comput. Biol..

A linear size index for approximate pattern matching

Tak Wah Lam, Siu-Lung Tam, Wing-Kin Sung, 2011, J. Discrete Algorithms.

The Maximum Agreement of Two Nested Phylogenetic Networks

Wing-Kin Sung, Jesper Jansson, W. Sung, 2004, ISAAC.

Compressed Dynamic Tries with Applications to LZ-Compression in Sublinear Time and Space

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2007, FSTTCS.

A Space and Time Efficient Algorithm for Constructing Compressed Suffix Arrays

Siu-Ming Yiu, Wing-Kai Hon, Kunihiko Sadakane, 2002, Algorithmica.

Learning multi-time delay gene network using Bayesian network framework

Ankush Mittal, Wing-Kin Sung, Tie-Fei Liu, 2004, 16th IEEE International Conference on Tools with Artificial Intelligence.

Compressed Directed Acyclic Word Graph with Application in Local Alignment

Wing-Kin Sung, Huy Hoang Do, 2011, COCOON.

Cavity Matchings, Label Compressions, and Unrooted Evolutionary Trees

Ming-Yang Kao, Tak Wah Lam, Hing-Fung Ting, 2000, SIAM J. Comput..

Efficient Identification of k-Closed Strings

Costas S. Iliopoulos, Solon P. Pissis, Wing-Kin Sung, 2017, EANN.

Multimodality as a criterion for feature selection in unsupervised analysis of gene expression data

Yi Li, Wing-Kin Sung, Lance D. Miller, 2005, Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05).

Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs

Wing-Kin Sung, Jesper Jansson, Ngo Trung Hieu, 2004, ISAAC.

Guest Editors' Foreword

Ryuhei Uehara, Mohammad Sohel Rahman, Wing-Kin Sung, 2019, J. Graph Algorithms Appl..

Indexed Approximate String Matching

Wing-Kin Sung, 2008, Encyclopedia of Algorithms.

Discriminative Fusion Approach for Automatic Image Annotation

Qi Tian, Sheng Gao, Wing-Kin Sung, 2005, 2005 IEEE 7th Workshop on Multimedia Signal Processing.

Constructing the R* Consensus Tree of Two Trees in Subcubic Time

Wing-Kin Sung, Jesper Jansson, 2012, Algorithmica.

Constructing a Galled Phylogenetic Network

Wing-Kin Sung, 2008, Encyclopedia of Algorithms.

Linked Dynamic Tries with Applications to LZ-Compression in Sublinear Time and Space

Kunihiko Sadakane, Wing-Kin Sung, Jesper Jansson, 2013, Algorithmica.

Compressed index for dynamic text

Siu-Ming Yiu, Wing-Kai Hon, Kunihiko Sadakane, 2004, Data Compression Conference, 2004. Proceedings. DCC 2004.

Using Indirect protein-protein Interactions for protein Complex Prediction

Limsoon Wong, Hon Wai Leong, Wing-Kin Sung, 2008, J. Bioinform. Comput. Biol..

On the Control of Hybridization Noise in DNA Sequencing-by-Hybridization

Franco P. Preparata, Hon Wai Leong, Wing-Kin Sung, 2002, WABI.

Discovering interacting domains and motifs in protein-protein interactions.

See-Kiong Ng, Wing-Kin Sung, Willy Hugo, 2013, Methods in molecular biology.

Fast Algorithms for Computing the Tripartition-Based Distance Between Phylogenetic Networks

Wing-Kin Sung, C. Thach Nguyen, Nguyen Bao Nguyen, 2005, ISAAC.

A Linear Time Algorithm for the r-Gathering Problem on the Line (Extended Abstract)

Mohammad Sohel Rahman, Wing-Kin Sung, Anik Sarker, 2019, WALCOM.

A Faster Construction of Greedy Consensus Trees

Gad M. Landau, Pawel Gawrychowski, Wing-Kin Sung, 2017, ICALP.

Faster Algorithms for Computing the R* Consensus Tree

Siu-Ming Yiu, Wing-Kin Sung, Jesper Jansson, 2014, ISAAC.

Indexing Similar DNA Sequences

Siu-Ming Yiu, Tak Wah Lam, Siu-Lung Tam, 2010, AAIM.

Mining transcriptional association rules from breast cancer profile data

Wing-Kin Sung, Du Zhang, Meiliu Lu, 2011, 2011 IEEE International Conference on Information Reuse & Integration.

Automatic Construction of Online Catalog Topologies

Siu-Ming Yiu, David Wai-Lok Cheung, Tak Wah Lam, 2001, EC-Web.

A linear time algorithm for the r-gathering problem on the line

Wing-Kin Sung, Anik Sarker, Mohammad Sohel Rahman, 2021, Theor. Comput. Sci..

HIVID2: an accurate tool to detect virus integrations in the host genome

Wing-Kin Sung, Guoliang Li, Xi Zeng, 2021, Bioinform..

Computing the Rooted Triplet Distance Between Phylogenetic Networks

Wing-Kin Sung, Jesper Jansson, Ramesh Rajaby, 2021, Algorithmica.

SurVIndel: improving CNV calling from high-throughput sequencing data through statistical testing

Wing-Kin Sung, Ramesh Rajaby, W. Sung, 2019, Bioinform..

Guest Editors' Foreword

Kunihiko Sadakane, Mohammad Sohel Rahman, Wing-Kin Sung, 2007, J. Graph Algorithms Appl..

Computational annotation of transcription factor binding sites in D. Melanogaster developmental genes.

Ankush Mittal, Wing-Kin Sung, Vipin Narang, 2006, Genome informatics. International Conference on Genome Informatics.

Inherent Signals in Sequencing-Based Chromatin-ImmunoPrecipitation Control Libraries

Wing-Kin Sung, Edwin Cheung, Nallasivam Palanisamy, 2009, PloS one.

A Genomic Survey of Positive Selection in Burkholderia pseudomallei Provides Insights into the Evolution of Accidental Virulence

Wing-Kin Sung, William C. Nierman, Christina Nilsson, 2010, PLoS pathogens.

Gene expression An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

Wing-Kin Sung, Chia-Lin Wei, W. Sung, 2008 .

Using indirect protein-protein interactions for protein complex predication.

Limsoon Wong, Hon Wai Leong, Wing-Kin Sung, 2007, Computational systems bioinformatics. Computational Systems Bioinformatics Conference.

Chromatin interaction networks and higher order architectures of eukaryotic genomes

Wing-Kin Sung, Yijun Ruan, Guoliang Li, 2011, Journal of cellular biochemistry.

Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state

Wing-Kin Sung, Edison T Liu, E. Liu, 2011, Molecular systems biology.

BatAlign: an incremental method for accurate alignment of sequencing reads

Wing-Kin Sung, Jing-Quan Lim, Chandana Tennakoon, 2015, Nucleic acids research.

Long Span DNA Paired-End-Tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations and Fusion-Point-Guided Reconstruction of Amplicons

Niranjan Nagarajan, Wing-Kin Sung, Guillaume Bourque, 2012, PloS one.

Jmjd3 contributes to the control of gene expression in LPS-activated macrophages

Giuseppe Testa, Wing-Kin Sung, Chia-Lin Wei, 2009, The EMBO journal.

Computing unrooted maximum subtrees in sub-quartic time

Hing-Fung Ting, Wing-Kin Sung, Tak-Wah Lam, 1996 .

ChIA-PET analysis of transcriptional chromatin interactions.

Wing-Kin Sung, Yijun Ruan, Yufen Goh, 2012, Methods.

Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation.

Joshy George, Wing-Kin Sung, Yijun Ruan, 2007, Molecular cell.

Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates

Wing-Kin Sung, Edward J Feil, Sharon J Peacock, 2010, Genome Biology.

Large-scale evolutionary surveillance of the 2009 H1N1 influenza A virus using resequencing arrays

Wing-Kin Sung, Charlie Wah Heng Lee, Martin L. Hibberd, 2010, Nucleic acids research.

Global mapping of c-Myc binding sites and target gene networks in human B cells

Zhiping Weng, Wing-Kin Sung, Vladimir A. Kuznetsov, 2006, Proceedings of the National Academy of Sciences.

Comprehensive evaluation of common genetic variation within LRRK2 reveals evidence for association with sporadic Parkinson's disease.

Wing-Kin Sung, Yi Li, Louis Tan, 2005, Human molecular genetics.

Integration of Regulatory Networks by NKX3-1 Promotes Androgen-Dependent Prostate Cancer Survival

Wing-Kin Sung, Edwin Cheung, Cheng Wei Chang, 2012, Molecular and Cellular Biology.

Do Triplets Have Enough Information to Construct the Multi-Labeled Phylogenetic Tree?

Changiz Eslahchi, Wing-Kin Sung, W. Sung, 2014, PloS one.

Whole-genome reconstruction and mutational signatures in gastric cancer

Niranjan Nagarajan, Denis Bertrand, Wing-Kin Sung, 2012, Genome Biology.

Identifying differential histone modification sites from ChIP-seq data.

Wing-Kin Sung, W. Sung, Han Xu, 2012, Methods in molecular biology.