Amol Prakash

发表

Algorithms for Constructing Signal Maps be- tween Mass Spectrometry Experiments

Benno Schwikowski, Heidi Zhang, Amanda G. Paulovich, 2003 .

Assessing the reproducibility of an O‐glycopeptide enrichment method with a novel software, Pinnacle

Adam Pap, Zsuzsanna Darula, Amol Prakash, 2018, Electrophoresis.

Assessing the Discordance of Multiple Sequence Alignments

Martin Tompa, Amol Prakash, A. Prakash, 2009, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Signal Maps for Mass Spectrometry-based Comparative Proteomics*

Benno Schwikowski, Jeffrey Whiteaker, Heidi Zhang, 2006, Molecular & Cellular Proteomics.

Hybrid data acquisition and processing strategies with increased throughput and selectivity: pSMART analysis for global qualitative and quantitative analysis.

Barbara Frewen, Scott Peterman, Amol Prakash, 2014, Journal of proteome research.

Motif Discovery in Heterogeneous Sequence Data

Mathieu Blanchette, Saurabh Sinha, Martin Tompa, 2003, Pacific Symposium on Biocomputing.

Detection and verification of 2.3 million cancer mutations in NCI60 cancer cell lines with a cloud search engine.

Conor Jenkins, Amol Prakash, Swetaketu Majumder, 2019, Journal of proteomics.

Bolt: A new age peptide search engine for comprehensive MS/MS sequencing through vast protein databases in minutes

Conor Jenkins, Ben Orsburn, Amol Prakash, 2019, bioRxiv.

Assessing Bias in Experiment Design for Large Scale Mass Spectrometry-based Quantitative Proteomics*S

Benno Schwikowski, Heidi Zhang, Ruedi Aebersold, 2007, Molecular & Cellular Proteomics.

Performance modeling and analysis of a handover channel exchange scheme in mobile cellular communication systems

Rajeev Shorey, Natwar Modani, Amol Prakash, 2000, 2000 IEEE International Conference on Communications. ICC 2000. Global Convergence Through Communications. Conference Record.

Statistics of local multiple alignments

Martin Tompa, Amol Prakash, A. Prakash, 2005, ISMB.

Development of a Synthetic Protein Quality Control (QC) Standard for the Assessment of Development of a Synthetic Protein Quality Control (QC) Standard for the Assessment of

Scott Peterman, Michael Athanas, Amol Prakash, 2010 .

Identification of Hindi Plain Text Using Artificial Neural Network

Maiya Din, Amol Prakash, Siddheshwar Mukhede, 2018, Harmony Search and Nature Inspired Optimization Algorithms.

Triple Quadruple Mass Spectromery-Based Peptide Assays Using Intelligent SRM (iSRM)

Scott Peterman, Amol Prakash, Alan Schoen, 2010 .

Measurement of protein phosphorylation stoichiometry by selected reaction monitoring mass spectrometry.

Paul Taylor, Michael F Moran, Amol Prakash, 2010, Journal of proteome research.

Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.

Jeffrey Whiteaker, Heidi Zhang, Pei Wang, 2006, Journal of proteome research.

Characterizing Qualitative and Quantitative Global Changes in the Aging Heart Using pSMART , a Novel Acquisition Method

Barbara Frewen, Scott Peterman, Amol Prakash, 2014 .

Biochemical Fractionation and Stable Isotope Dilution Liquid Chromatography-mass Spectrometry for Targeted and Microdomain-specific Protein Quantification in Human Postmortem Brain Tissue*

Ian A Blair, Amol Prakash, Anamika Banerjee, 2012, Molecular & Cellular Proteomics.

Defining HIV-1 Envelope N-Glycan Microdomains through Site-Specific Heterogeneity Profiles

Todd J. Green, Amol Prakash, Milan Raska, 2018, Journal of Virology.

Quantitative phosphoproteomic analysis of the STAT3/IL-6/HIF1alpha signaling network: an initial study in GSC11 glioblastoma stem cells.

Howard Colman, Amol Prakash, Michael Greig, 2010, Journal of proteome research.

Discrimination of ischemic and hemorrhagic strokes using a multiplexed, mass spectrometry‐based assay for serum apolipoproteins coupled to multi‐marker ROC algorithm

Scott Peterman, Amol Prakash, Michael Athanas, 2012, Proteomics. Clinical applications.

Discovery of regulatory elements in vertebrates through comparative genomics

Martin Tompa, Amol Prakash, A. Prakash, 2005, Nature Biotechnology.

Mass spectrometric discovery and selective reaction monitoring (SRM) of putative protein biomarker candidates in first trimester Trisomy 21 maternal serum.

Scott Peterman, Jennifer N. Sutton, Amol Prakash, 2011, Journal of proteome research.