K. Cao

发表

Biomarker development for axial spondyloarthritis

M. Brown, Zhixiu Li, K. L. Cao, 2020, Nature Reviews Rheumatology.

PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events

Mikael Bodén, Ralph Patrick, Kim-Anh Lê Cao, 2015, Bioinform..

Dietary intake influences gut microbiota development of healthy Australian children from the age of one to two years

C. Wall, R. Hill, P. Davies, 2019, Scientific Reports.

How does the early life environment influence the oral microbiome and determine oral health outcomes in childhood?

C. Adler, K. L. Cao, T. Hughes, 2021, BioEssays : news and reviews in molecular, cellular and developmental biology.

A fine-scale dissection of the DNA double-strand break repair machinery and its implications for breast cancer therapy

G. Chenevix-Trench, M. Ragan, K. Khanna, 2014, Nucleic acids research.

DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays

Kim-Anh Lê Cao, Florian Rohart, Amrit Singh, 2019, Bioinform..

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

Philippe Besse, Kim-Anh Lê Cao, Simon Boitard, 2011, BMC Bioinformatics.

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing

Anton J. Enright, A. Enright, J. Mattick, 2015, Nature Methods.

A novel approach for biomarker selection and the integration of repeated measures experiments from two assays

Kim-Anh Lê Cao, Rodolphe Thiébaut, Benoit Liquet, 2012, BMC Bioinformatics.

Host traits and evolution shape key coral-bacterial symbioses

H. Verbruggen, L. Blackall, F. Ricci, 2021 .

ofw: An R Package to Select Continuous Variables for Multiclass Classification with a Stochastic Wrapper Method

Kim-Anh Lê Cao, Patrick Chabrier, P. Chabrier, 2008 .

Ski Overexpression in Skeletal Muscle Modulates Genetic Programs That Control Susceptibility to Diet‐Induced Obesity and Insulin Signaling

G. Cowin, G. Muscat, G. Thomas, 2012, Obesity.

The EADGENE Microarray Data Analysis Workshop (Open Access publication)

M. Lund, H. Hornshøj, D. Waddington, 2007, Genetics Selection Evolution.

The EADGENE microarray data analysis workshop

M. Lund, H. Hornshøj, D. Waddington, 2007 .

Corrigendum: Genome-wide characterization of the routes to pluripotency

David L. A. Wood, W. Ritchie, J. Rasko, 2015, Nature.

PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data

Yiwen Wang, K. Cao, 2023, Briefings Bioinform..

Sorting the nuclear proteome

Mikael Bodén, Kim-Anh Lê Cao, Fabian A. Buske, 2011, Bioinform..

integrOmics: an R package to unravel relationships between two omics datasets

Ignacio González, Kim-Anh Lê Cao, Sébastien Déjean, 2009, Bioinform..

Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (Open Access publication)

M. Lund, H. Hornshøj, D. Waddington, 2007, Genetics Selection Evolution.

Serum Glycoprotein Biomarker Discovery and Qualification Pipeline Reveals Novel Diagnostic Biomarker Candidates for Esophageal Adenocarcinoma*

A. Barbour, D. Whiteman, Alok K. Shah, 2015, Molecular & Cellular Proteomics.

Integrative mixture of experts to combine clinical factors and gene markers

Geoffrey J. McLachlan, Kim-Anh Lê Cao, Emmanuelle Meugnier, 2010, Bioinform..

Multivariate Data Integration Using R

Kim-Anh Lê Cao, Zoe Marie Welham, Z. Welham, 2021 .

Dynamic molecular changes during the first week of human life follow a robust developmental trajectory

Ryan R Brinkman, Hanno Steen, Cai Bing, 2019, Nature Communications.

Mapping the stabilome: a novel computational method for classifying metabolic protein stability

Mikael Bodén, Ralph Patrick, Kim-Anh Lê Cao, 2012, BMC Systems Biology.

An integrated analysis of myeloid cells identifies gaps in in vitro models of in vivo biology

Chris M. Pacheco, Paul W. Angel, C. Wells, 2019, bioRxiv.

Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets

Kim-Anh Lê Cao, Fangzhou Yao, Jeff Coquery, 2012, BMC Bioinformatics.

Intestinal Metaproteomics Reveals Host-Microbiota Interactions in Subjects at Risk for Type 1 Diabetes

Kim-Anh Lê Cao, Michelle M. Hill, Dorothy Loo, 2018, Diabetes Care.

PhosphoPICK‐SNP: quantifying the effect of amino acid variants on protein phosphorylation

Mikael Bodén, Ralph Patrick, Kim-Anh Lê Cao, 2017, Bioinform..

Sparse canonical methods for biological data integration: application to a cross-platform study

Philippe Besse, Kim-Anh Lê Cao, Pascal G. P. Martin, 2009, BMC Bioinformatics.

Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references

Jarny Choi, K. L. Cao, Yidi Deng, 2022, Briefings Bioinform..

Multiclass classification and gene selection with a stochastic algorithm

Kim-Anh Lê Cao, Sébastien Gadat, Agnès Bonnet, 2009, Comput. Stat. Data Anal..

timeOmics: an R package for longitudinal multi-omics data integration

Arnaud Droit, Kim-Anh Lê Cao, Marie-Pier Scott-Boyer, 2021, Bioinform..

Prediction of kinase-specific phosphorylation sites through an integrative model of protein context and sequence

Mikael Bodén, Ralph Patrick, Kim-Anh Lê Cao, 2016, bioRxiv.

Model-based joint visualization of multiple compositional omics datasets

Luc Bijnens, Kim-Anh Lê Cao, Stijn Hawinkel, 2020, NAR genomics and bioinformatics.

Implementation and evaluation of amyloidosis subtyping by laser-capture microdissection and tandem mass spectrometry

K. L. Cao, M. Hill, V. Lakis, 2016, Clinical Proteomics.

Managing batch effects in microbiome data

Yiwen Wang, Kim-Anh Lê Cao, Yiwen Wang, 2019, Briefings Bioinform..

Visualising associations between paired ‘omics’ data sets

Ignacio González, Kim-Anh Lê Cao, Sébastien Déjean, 2012, BioData Mining.

A multi-modal data harmonisation approach for discovery of COVID-19 drug targets

Tyrone Chen, K. L. Cao, Melcy Philip, 2021, Briefings Bioinform..

Integrative analyses to investigate the link between microbial activity and metabolites degradation during anaerobic digestion.

L. Mazéas, Laëtitia Cardona, C. Bureau, 2020, Journal of proteome research.

Integration and variable selection of ‘omics’ data sets with PLS: a survey

Kim-Anh Lê Cao, Caroline Le Gall, C. L. Gall, 2011 .

Evaluation of Serum Glycoprotein Biomarker Candidates for Detection of Esophageal Adenocarcinoma and Surveillance of Barrett's Esophagus*

A. Barbour, D. Whiteman, B. Spicer, 2018, Molecular & Cellular Proteomics.

Analysis of the real EADGENE data set: Multivariate approaches and post analysis (Open Access publication)

M. Lund, H. Hornshøj, D. Waddington, 2007, Genetics Selection Evolution.

Statistical Analysis on Microarray Data: Selection of Gene Prognosis Signatures

Geoffrey J. McLachlan, Kim-Anh Lê Cao, G. McLachlan, 2009 .

multiomics: A user-friendly multi-omics data harmonisation R pipeline

Tyrone Chen, Sonika Tyagi, Kim-Anh Lê Cao, 2021, F1000Research.

MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms

Stéphanie Bougeard, Kim-Anh Lê Cao, Aida Eslami, 2016, BMC Bioinformatics.

DIABLO - an integrative, multi-omics, multivariate method for multi-group classification

Kim-Anh Lê Cao, Florian Rohart, Casey P. Shannon, 2017 .

Insightful graphical outputs to explore relationships between two ‘omics’ data sets

Kim-Anh Lê Cao, Sébastien Déjean, Melissa J. Davis, 2013 .

Intestinal Metaproteomics Reveals Host-Microbiota Interactions in Subjects at Risk for Type 1 Diabetes

P. Gottlieb, M. Hill, D. Zipris, 2018, Diabetes Care.