Marco Vanoni

发表

Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes

Lilia Alberghina, Chiara Balestrieri, Marco Vanoni, 2009, BMC Bioinformatics.

An Integrated Model Quantitatively Describing Metabolism, Growth and Cell Cycle in Budding Yeast

Pasquale Palumbo, Federico Papa, Bas Teusink, 2017, WIVACE.

Cell Size at S Phase Initiation: An Emergent Property of the G1/S Network

Edda Klipp, Matteo Barberis, Lilia Alberghina, 2007, PLoS Comput. Biol..

Glucose Signaling-Mediated Coordination of Cell Growth and Cell Cycle in Saccharomyces Cerevisiae

Lilia Alberghina, Marco Vanoni, Stefano Busti, 2010, Sensors.

An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes

Giancarlo Mauri, Riccardo Colombo, Dario Pescini, 2014, Natural Computing.

An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis

Giancarlo Mauri, Riccardo Colombo, Dario Pescini, 2013, WIVACE.

An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes

Elena Papaleo, Lilia Alberghina, Piercarlo Fantucci, 2011, PLoS Comput. Biol..

Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation

Edda Klipp, Luciano Milanesi, Matteo Barberis, 2009, BMC Bioinformatics.

Modeling Biological Timing and Synchronization Mechanisms by Means of Interconnections of Stochastic Switches

Costanzo Manes, Pasquale Palumbo, Valerio Cusimano, 2018, IEEE Control Systems Letters.

Klimatische Einflüsse auf die Wachstumsvariabilität von Weisstanne und Fichte entlang des Weisstannen-Ausbreitungsgradienten

Marco Vanoni, 2012 .

Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models

Giancarlo Mauri, Riccardo Colombo, Chiara Damiani, 2016, Comput. Biol. Chem..

A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect

Giancarlo Mauri, Riccardo Colombo, Hans V. Westerhoff, 2017, PLoS Comput. Biol..

Whole yeast model: what and why

Pasquale Palumbo, Federico Papa, Lilia Alberghina, 2018, PeerJ Prepr..

The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System

Giulio Caravagna, Riccardo Colombo, Daniele Ramazzotti, 2020, Fundam. Informaticae.

A framework for validating AI in precision medicine: considerations from the European ITFoC consortium

Giancarlo Mauri, Boris Campillo-Gimenez, Marc Cuggia, 2021, BMC Medical Informatics and Decision Making.

The CK2 phosphorylation of catalytic domain of Cdc34 modulates its activity at the G1 to S transition in Saccharomyces cerevisiae

Lilia Alberghina, Marco Vanoni, Gabriella Tedeschi, 2008, Cell cycle.

Whi5 phosphorylation embedded in the G1/S network dynamically controls critical cell size and cell fate

Costanzo Manes, Pasquale Palumbo, Valerio Cusimano, 2016, Nature Communications.

The yeast cyclin-dependent kinase inhibitor Sic1 and mammalian p27Kip1 are functional homologues with a structurally conserved inhibitory domain.

Matteo Barberis, Lilia Alberghina, Piercarlo Fantucci, 2005, The Biochemical journal.

Regulation of MAL gene expression in yeast: Gene dosage effects

Marco Vanoni, M. Vanoni, J. Marmur, 1987, Molecular and General Genetics MGG.

CK2 regulates in vitro the activity of the yeast cyclin-dependent kinase inhibitor Sic1.

Matteo Barberis, Lilia Alberghina, Marco Vanoni, 2005, Biochemical and biophysical research communications.

Analysis and modeling of growing budding yeast populations at the single cell level

Lilia Alberghina, Marco Vanoni, Christos Hatzis, 2009, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

Rapamycin‐mediated G1 arrest involves regulation of the Cdk inhibitor Sic1 in Saccharomyces cerevisiae

Lilia Alberghina, Marco Vanoni, Vittoria Zinzalla, 2007, Molecular microbiology.

Cell growth and cell cycle in Saccharomyces cerevisiae: basic regulatory design and protein-protein interaction network.

Gabriella Mavelli, Pasquale Palumbo, Lilia Alberghina, 2012, Biotechnology advances.

Expression of transforming K-Ras oncogene affects mitochondrial function and morphology in mouse fibroblasts.

Lilia Alberghina, Marco Vanoni, Ferdinando Chiaradonna, 2006, Biochimica et biophysica acta.

Systems Biology and the Molecular Circuits of Cancer

Lilia Alberghina, Marco Vanoni, Ferdinando Chiaradonna, 2004, Chembiochem : a European journal of chemical biology.

A modular systems biology analysis of cell cycle entrance into S-phase

Lilia Alberghina, Marco Vanoni, Riccardo L. Rossi, 2005 .

Glutamine Deprivation Induces Abortive S-Phase Rescued by Deoxyribonucleotides in K-Ras Transformed Fibroblasts

Lilia Alberghina, Marco Vanoni, Ferdinando Chiaradonna, 2009, PloS one.

Identification and in silico analysis of a new group of double-histone fold-containing proteins

Marco Vanoni, Claudio Greco, Elena Sacco, 2005, Journal of molecular modeling.

A cell sizer network involving Cln3 and Far1 controls entrance into S phase in the mitotic cycle of budding yeast

Lilia Alberghina, Marco Vanoni, Riccardo L. Rossi, 2004, The Journal of cell biology.

Subcellular Localization of the Cyclin Dependent Kinase Inhibitor Sic1 is Modulated by the Carbon Source in Budding Yeast

Lilia Alberghina, Marco Vanoni, Riccardo L Rossi, 2005, Cell cycle.

Overexpression of Far1, a cyclin-dependent kinase inhibitor, induces a large transcriptional reprogramming in which RNA synthesis senses Far1 in a Sfp1-mediated way.

Gabriella Mavelli, Giovanni Felici, Paola Bertolazzi, 2012, Biotechnology advances.

Molecular networks and system-level properties.

Lilia Alberghina, Marco Vanoni, Thomas Höfer, 2009, Journal of biotechnology.

Loop 7 of E2 Enzymes: An Ancestral Conserved Functional Motif Involved in the E2-Mediated Steps of the Ubiquitination Cascade

Elena Papaleo, Nicola Casiraghi, Marco Vanoni, 2012, PloS one.

Catalytic competence of the Ras–GEF domain of hSos1 requires intra‐REM domain interactions mediated by Phenylalanine 577

Lilia Alberghina, Marco Vanoni, Stefano Busti, 2006, FEBS letters.

Comparative analysis of the molecular mechanisms controlling the initiation of chromosomal DNA replication in yeast and in mammalian cells.

Lilia Alberghina, Md Mehedi Hasan, Marco Vanoni, 2012, Biotechnology advances.

Order propensity of an intrinsically disordered protein, the cyclin‐dependent‐kinase inhibitor Sic1

Lilia Alberghina, Vladimir N Uversky, Rita Grandori, 2009, Proteins.

Integration of single-cell RNA-seq data into metabolic models to characterize tumour cell populations

Giancarlo Mauri, Davide Maspero, Marzia Di Filippo, 2018, bioRxiv.