Luonan Chen

Kazuyuki Aihara, Luonan Chen, 1998, SMC'98 Conference Proceedings. 1998 IEEE International Conference on Systems, Man, and Cybernetics (Cat. No.98CH36218).

Detecting Causality from Nonlinear Dynamics with Short-term Time Series

Kazuyuki Aihara, Luonan Chen, Huanfei Ma, 2014, Scientific Reports.

Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data

Juan Liu, Xiangtian Yu, Luonan Chen, 2017, Bioinform..

Measuring robustness of community structure in complex networks pdf

Hao Wang, Luonan Chen, Hui-Jia Li, 2014, ArXiv.

A Novel Classifier Based on Enhanced Lipschitz Embedding for Speech Emotion Recognition

Luonan Chen, Guo-Zheng Li, Jianhua Tao, 2008, ICIC.

Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2007, PAKDD Workshops.

Identifying early-warning signals of critical transitions with strong noise by dynamical network markers

Kazuyuki Aihara, Pei Chen, Luonan Chen, 2015, Scientific Reports.

Integration of multiple heterogeneous omics data

Juan Liu, Xiangtian Yu, Luonan Chen, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Network‐Based Prediction of Protein Function

Luonan Chen, Xiang-Sun Zhang, Rui-Sheng Wang, 2009 .

Systems biology with omics data.

Luonan Chen, Luonan Chen, 2014, Methods.

Periodic oscillators in genetic networks with negative feedback loops

Luonan Chen, Zhujun Jing, Ruiqi Wang, 2004 .

Guest Editorial: Bioinformatics and Computational Systems Biology

Michael K. Ng, Luonan Chen, 2012, TCBB.

Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2008, Neurocomputing.

Designing synthetic biological networks

Luonan Chen, S. Wong, Ruiqi Wang, 2006, 2006 IEEE International Symposium on Circuits and Systems.

Big Biological Data: Challenges and Opportunities

Yixue Li, Luonan Chen, Yixue Li, 2014, Genom. Proteom. Bioinform..

Mining K-mers of Various Lengths in Biological Sequences

Xiaoqing Yu, Jingsong Zhang, Xiangtian Yu, 2017, ISBRA.

Differential function analysis: identifying structure and activation variations in dysregulated pathways

Juan Liu, Luonan Chen, Tao Zeng, 2016, Science China Information Sciences.

Construction and analysis of genome-wide SNP networks

Michael K. Ng, Jin Zhou, Zhi-Ping Liu, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Quantifying Waddington’s epigenetic landscape: a comparison of single-cell potency measures

Luonan Chen, Tiejun Li, Jifan Shi, 2018, bioRxiv.

Optimization and control of metabolic networks

Luonan Chen, Rui-Sheng Wang, Xiang-Sun Zhang, 2010, Proceedings of the 29th Chinese Control Conference.

Fuzzy System Methods in Modeling Gene Expression and Analyzing Protein Networks

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2009, Fuzzy Systems in Bioinformatics and Computational Biology.

NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference

Xing-Ming Zhao, Jin-Kao Hao, Béatrice Duval, 2013, Bioinform..

Identifying critical transitions of complex diseases based on a single sample

Kazuyuki Aihara, Dong Xu, Rui Liu, 2014, Bioinform..

Bioinformatics Methods for Protein Identification Using Peptide Mass Fingerprinting

Dong Xu, Luonan Chen, Zhao Song, 2010, Proteome Bioinformatics.

Topological Structure of Biomolecular Networks

Luonan Chen, Xiang-Sun Zhang, Rui-Sheng Wang, 2009 .

A new method to identify repositioned drugs for prostate cancer

Luonan Chen, Yong Wang, Zikai Wu, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats

Xiao Han, Zhi-Ping Liu, Luonan Chen, 2012, BMC Systems Biology.

Identifying overlapping communities in social networks using multi-scale local information expansion

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2012, The European Physical Journal B.

An integrated gene regulatory network inference pipeline

Luonan Chen, Yong Wang, Katsuhisa Horimoto, 2011, Proceedings of the 30th Chinese Control Conference.

Prediction of protein-RNA binding sites by a random forest method with combined features

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2010, Bioinform..

Dynamically dysfunctional protein interactions in the development of Alzheimer's disease

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2009, 2009 IEEE International Conference on Systems, Man and Cybernetics.

Protein function prediction with high-throughput data

Kazuyuki Aihara, Luonan Chen, Xing-Ming Zhao, 2008, Amino Acids.

Tracing dynamic biological processes during phase transition

Luonan Chen, Tao Zeng, Tao Zeng, 2012, BMC Systems Biology.

Aligning Multiple Protein Structures by Deterministic Annealing

Luonan Chen, Xiang-Sun Zhang, Tianshou Zhou, 2005, J. Bioinform. Comput. Biol..

A Markov chain model for haplotype assembly from SNP fragments.

Luonan Chen, Xiang-Sun Zhang, Ling-Yun Wu, 2006, Genome informatics. International Conference on Genome Informatics.

Gaussian graphical model for identifying significantly responsive regulatory networks from time course high-throughput data.

Zhi-Ping Liu, Luonan Chen, Katsuhisa Horimoto, 2013, IET systems biology.

Frequency Synchronization of a Set of Cells Coupled by Quorum Sensing

Ying Li, Luonan Chen, Zengrong Liu, 2007, LSMS.

Inferring gene regulatory networks from multiple microarray datasets

Trupti Joshi, Dong Xu, Luonan Chen, 2006, Bioinform..

Inferring Sequential Order of Somatic Mutations during Tumorgenesis based on Markov Chain Model

Kwang-Hyun Cho, Luonan Chen, Tao Zeng, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Stochastic synchronization of genetic oscillator networks

Kazuyuki Aihara, Luonan Chen, Chunguang Li, 2007, BMC Systems Biology.

Identifying cancer-related microRNAs based on gene expression data

Xing-Ming Zhao, Changjun Jiang, Jin-Kao Hao, 2015, Bioinform..

Identifying dysregulated pathways in cancers from pathway interaction networks

Xing-Ming Zhao, Jin-Kao Hao, Keqin Liu, 2012, BMC Bioinformatics.

Reconstructing dynamic gene regulatory network for the development process of hepatocellular carcinoma

Hailong Zhu, Luonan Chen, R. Shyama Prasad Rao, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

A novel mixed integer programming for multi-biomarker panel identification by distinguishing malignant from benign colorectal tumors.

Luonan Chen, Yong Wang, Meng Zou, 2015, Methods.

Designing oscillators in synthetic gene networks based on multi-scale dynamics

Kazuyuki Aihara, Luonan Chen, Tetsuya Kobayashi, 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.

Stochastic Stability of Genetic Networks With Disturbance Attenuation

Kazuyuki Aihara, Luonan Chen, Chunguang Li, 2007, IEEE Transactions on Circuits and Systems II: Express Briefs.

Part mutual information for quantifying direct associations in networks

Luonan Chen, Juan Zhao, Xiujun Zhang, 2016, Proceedings of the National Academy of Sciences.

Computational systems biology: integration of sequence, structure, network, and dynamics

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2011, BMC Systems Biology.

Detecting disease associated modules and prioritizing active genes based on high throughput data

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2010, BMC Bioinformatics.

Detecting causality from short time-series data based on prediction of topologically equivalent attractors

Weibo Li, Luonan Chen, Yazhou Shi, 2017, BMC Systems Biology.

Evaluating Protein Similarity from Coarse Structures

Luonan Chen, Xiang-Sun Zhang, Ling-Yun Wu, 2009, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Inferring protein interactions from experimental data by association probabilistic method

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2006, Proteins.

Network stratification analysis for identifying function-specific network layers.

Juan Liu, Dong Xu, Luonan Chen, 2016, Molecular bioSystems.

Comparative analysis of protein-coding genes and long non-coding RNAs of prostate cancer between Caucasian and Chinese populations

Xing-Ming Zhao, Yan Zhang, Luonan Chen, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Stochastic Hybrid System for Chemical Master Equation

Kazuyuki Aihara, Luonan Chen, Ruiqi Wang, 2009 .

DTMBIO 2014: International Workshop on Data and Text Mining in Biomedical Informatics

Doheon Lee, Min Song, Hua Xu, 2014, CIKM.

Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis

Rui Liu, Luonan Chen, Tao Zeng, 2014, Briefings Bioinform..

Identifying Critical Transitions of Biological Processes by Dynamical Network Biomarkers

Luonan Chen, 2013, ISBRA.

Prediction and early diagnosis of complex diseases by edge-network

Xiangtian Yu, Luonan Chen, Guojun Li, 2014, Bioinform..

FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures

Xing-Ming Zhao, Luonan Chen, Weihua Tang, 2010, BMC Systems Biology.

Protein cavity clustering based on community structure of pocket similarity network

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2008, Int. J. Bioinform. Res. Appl..

Network-based drug repositioning.

Luonan Chen, Yong Wang, Zikai Wu, 2013, Molecular bioSystems.

A fixed-point blind source extraction algorithm and its application to ECG data analysis

Shuxue Ding, Luonan Chen, Zikai Wu, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Integrating data- and model-driven strategies in systems biology

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2018, BMC Syst. Biol..

Designing Gene Regulatory Networks With Specified Functions

Luonan Chen, Ruiqi Wang, Luonan Chen, 2006, IEEE Transactions on Circuits and Systems I: Regular Papers.

Identification of phenotypic networks based on whole transcriptome by comparative network decomposition

Juan Liu, Luonan Chen, Tao Zeng, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

in silico identification of novel cancer-related genes by comparative genomics of naked mole rat and rat

Yan Zhang, Luonan Chen, Zhiyuan Yang, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Clustering-based ℌ2-state aggregation of positive networks and its application to reduction of chemical master equations

Antoine Girard, Takayuki Ishizaki, Jun-ichi Imura, 2012, 2012 IEEE 51st IEEE Conference on Decision and Control (CDC).

Confidence assessment for protein identification by using peptide‐mass fingerprinting data

Dong Xu, Luonan Chen, Zhao Song, 2009, Proteomics.

Designing synthetic biological systems by multiple time scale networks

Luonan Chen, Ruiqi Wang, Junya Nakai, 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..

Self-organizing map approaches for the haplotype assembly problem

Luonan Chen, Xiang-Sun Zhang, Ling-Yun Wu, 2009, Math. Comput. Simul..

Detecting the tipping points in a three-state model of complex diseases by temporal differential networks

Pei Chen, Luonan Chen, Yongjun Li, 2017, Journal of Translational Medicine.

Predicting Time Series from Short-Term High-Dimensional Data

Kazuyuki Aihara, Luonan Chen, Tianshou Zhou, 2014, Int. J. Bifurc. Chaos.

Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2012, BMC Bioinformatics.

Double Three-Level Inverter Based Variable Frequency Drive with Minimal Total Harmonic Distortion Using Particle Swarm Optimization

Dan Wang, Chengxiong Mao, Jiming Lu, 2007, ICIC.

Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2010, BMC Systems Biology.

Quantifying critical states of complex diseases using single-sample dynamic network biomarkers

Kazuyuki Aihara, Rui Liu, Xiangtian Yu, 2017, PLoS Comput. Biol..

Uniform asymptotic stability of hybrid dynamical systems with delay

Luonan Chen, Rong Yuan, Zhujun Jing, 2003, IEEE Trans. Autom. Control..

Bio-network medicine.

Luonan Chen, Jiarui Wu, 2015, Journal of molecular cell biology.

Automatic Modeling of Signal Pathways from Protein-Protein Interaction Networks

Xing-Ming Zhao, Kazuyuki Aihara, Luonan Chen, 2008, APBC.

Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2009, ICIC.

Construction of genetic oscillators with interlocked feedback networks.

Kazuyuki Aihara, Luonan Chen, Ruiqi Wang, 2006, Journal of theoretical biology.

Analysis on steady states of photosynthetic carbon metabolic system

Xin Wang, Luonan Chen, Ji-Feng Zhang, 2009, Proceedings of the 48h IEEE Conference on Decision and Control (CDC) held jointly with 2009 28th Chinese Control Conference.

Stability of Genetic Networks With SUM Regulatory Logic: Lur'e System and LMI Approach

Kazuyuki Aihara, Luonan Chen, Chunguang Li, 2006, IEEE Transactions on Circuits and Systems I: Regular Papers.

Domain-Domain Interaction Identification with a Feature Selection Approach

Xing-Ming Zhao, Luonan Chen, 2008, PRIB.

Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers

Kazuyuki Aihara, Rui Liu, Zhi-Ping Liu, 2012, Scientific Reports.

Modeling genetic switches with positive feedback loops.

Kazuyuki Aihara, Luonan Chen, Tetsuya Kobayashi, 2003, Journal of theoretical biology.

Multiple Phase Transitions in the Culture Dissemination

Kazuyuki Aihara, Bing Wang, Luonan Chen, 2009, Complex.

Identifying disease genes and module biomarkers by differential interactions

Xing-Ming Zhao, Zhi-Ping Liu, Luonan Chen, 2012, J. Am. Medical Informatics Assoc..

Inference of Transcriptional Regulatory Networks

Luonan Chen, Xiang-Sun Zhang, Rui-Sheng Wang, 2009 .

Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression

Zhi-Ping Liu, Luonan Chen, Katsuhisa Horimoto, 2011, BMC Systems Biology.

Detecting critical state before phase transition of complex biological systems by hidden Markov model

Yongjun Li, Pei Chen, Rui Liu, 2016, Bioinform..

Synchronizing a multicellular system by external input: an artificial control strategy

Kazuyuki Aihara, Luonan Chen, Ruiqi Wang, 2006, Bioinform..

Inference of Gene Regulatory Network Based on Local Bayesian Networks

Fei Liu, Luonan Chen, Shao-Wu Zhang, 2016, PLoS Comput. Biol..

Cooperative dynamics coordinated by stochastic noise in a multi-cell system

Kazuyuki Aihara, Luonan Chen, Ruiqi Wang, 2005, 2005 IEEE International Symposium on Circuits and Systems.

Reducing gene regulatory networks by decomposition

Kazuyuki Aihara, Luonan Chen, Ruiqi Wang, 2005, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05).

Optimal Unit Commitment Scheduling of Thermal Power System Based on the Monte Carlo Method

Luonan Chen, Junichi Toyoda, 1989 .

Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2009, PLoS Comput. Biol..

Diagnosing phenotypes of single-sample individuals by edge biomarkers.

Xiaoping Liu, Tao Zeng, Luonan Chen, 2015, Journal of molecular cell biology.

Investigation of anti-cancer mechanisms by comparative analysis of naked mole rat and rat

Yan Zhang, Luonan Chen, Zhiyuan Yang, 2013, BMC Systems Biology.

Predicting gene ontology functions from protein's regional surface structures

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2007, BMC Bioinformatics.

Correction: Tracing dynamic biological processes during phase transition

Luonan Chen, Tao Zeng, 2012, BMC Systems Biology.

Supervised Inference of Gene Regulatory Networks by Linear Programming

Trupti Joshi, Dong Xu, Luonan Chen, 2006, ICIC.

Clustered model reduction of positive directed networks

Antoine Girard, Takayuki Ishizaki, Jun-ichi Imura, 2015, Autom..

Module network rewiring in response to therapy

Luonan Chen, Tao Zeng, Ruozhao Wang, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Reconstruction of Regulator Activity in E. coli Post-Transcription Processes

Luonan Chen, Xiang-Sun Zhang, Rui-Sheng Wang, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Dynamical modeling of chronic myeloid leukemia progression and the development of mutations

Gouhei Tanaka, Kazuyuki Aihara, Luonan Chen, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

Guest Editorial for Special Section on ISB/TBC 2014

Shi-Hua Zhang, Luonan Chen, 2015, TCBB.

eFG: an electronic resource for Fusarium graminearum

Xing-Ming Zhao, Xiaodong Zhang, Luonan Chen, 2013, Database J. Biol. Databases Curation.

System identification models for gene regulation system

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2010, Proceedings of the 29th Chinese Control Conference.

A New Balanced Ensemble Classifier for Predicting Fungi Protein Subcellular Localization Based on Protein Primary Structures

Xing-Ming Zhao, Luonan Chen, Xingming Zhao, 2009, 2009 2nd International Conference on Biomedical Engineering and Informatics.

Understanding biological systems through the lens of data

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2017, BMC Systems Biology.

Randomly distributed embedding making short-term high-dimensional data predictable

Kazuyuki Aihara, Luonan Chen, Wei Lin, 2018, Proceedings of the National Academy of Sciences.

A parsimonious tree-grow method for haplotype inference

Luonan Chen, Xiang-Sun Zhang, Zhen-Ping Li, 2005, Bioinform..

Traffic jamming in disordered flow distribution networks

Kazuyuki Aihara, Luonan Chen, Bing Wang, 2008 .

Evaluating Protein Similarity from Coarse Structures

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2009, IEEE ACM Trans. Comput. Biol. Bioinform..

Development and assessment of scoring functions for protein identification using PMF data

Laurent Brechenmacher, Luonan Chen, Zhao Song, 2007, Electrophoresis.

Spice simulation of intracellular transport: Free diffusion†

Luonan Chen, Gabriel Vasilescu, 2011 .

SANA: an algorithm for sequential and non-sequential protein structure alignment

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2009, Amino Acids.

Inferring transcriptional regulatory networks from high-throughput data

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2007, Bioinform..

Gene function prediction using labeled and unlabeled data

Xing-Ming Zhao, Kazuyuki Aihara, Luonan Chen, 2008, BMC Bioinformatics.

Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity

Zhi-Ping Liu, Luonan Chen, Lin Gao, 2015, BMC Bioinformatics.

High-Order Correlation Integration for Single-Cell or Bulk RNA-seq Data Analysis

Luonan Chen, Hui Tang, Tao Zeng, 2019, Front. Genet..

Peak Load Forecasting Using the Self-organizing Map

Shu Fan, Chengxiong Mao, Luonan Chen, 2005, ISNN.

Genetic Networks with Stochastic Fluctuations

Kazuyuki Aihara, Luonan Chen, Ruiqi Wang, 2003 .

A systems biology approach to identify effective cocktail drugs

Xing-Ming Zhao, Luonan Chen, Zikai Wu, 2010, BMC Systems Biology.

Robustness of interval gene networks with multiple time-varying delays and noise

Yi Wang, Luonan Chen, Jianwei Shen, 2009, Neurocomputing.

Dynamical network biomarkers for identifying critical transitions and their driving networks of biologic processes

Kazuyuki Aihara, Rui Liu, Luonan Chen, 2013, Quantitative Biology.

The effect of coupled feedback on noise filtering in signal transduction networks

Luonan Chen, Ruiqi Wang, Zengrong Liu, 2010, J. Syst. Sci. Complex..

Supervised classification of protein structures based on convex hull representation

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2007, Int. J. Bioinform. Res. Appl..

Drug repositioning framework by incorporating functional information.

Luonan Chen, Yong Wang, Zikai Wu, 2013, IET systems biology.

Improved flower pollination algorithm for identifying essential proteins

Xiujuan Lei, Fang-Xiang Wu, Ming Fang, 2018, BMC Syst. Biol..

Inferring gene regulatory networks from expression data with prior knowledge by linear programming

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2010 .

Multiscale modeling biological systems.

Zhi-Ping Liu, Luonan Chen, 2016, IET systems biology.

Systematic computation with functional gene-sets among leukemic and hematopoietic stem cells reveals a favorable prognostic signature for acute myeloid leukemia

Bin Wang, Luonan Chen, Jianjun Chen, 2015, BMC Bioinformatics.

Automatic Modeling of Signaling Pathways by Network Flow Model

Xing-Ming Zhao, Kazuyuki Aihara, Luonan Chen, 2009, J. Bioinform. Comput. Biol..

Forecasting the Wind Generation Using a Two-Stage Network Based on Meteorological Information

Wei-Jen Lee, Shu Fan, Luonan Chen, 2009, IEEE Transactions on Energy Conversion.

Self-organizing map of complex networks for community detection

Luonan Chen, Xiang-Sun Zhang, Zhen-Ping Li, 2010, J. Syst. Sci. Complex..

Dynamics of an HBV Model with Drug Resistance Under Intermittent Antiviral Therapy

Gouhei Tanaka, Kazuyuki Aihara, Luonan Chen, 2015, Int. J. Bifurc. Chaos.

Protein function prediction with the shortest path in functional linkage graph and boosting

Xing-Ming Zhao, Kazuyuki Aihara, Luonan Chen, 2008, Int. J. Bioinform. Res. Appl..

Rational drug repositioning guided by an integrated pharmacological network of protein, disease and drug

Sunghoon Kim, Luonan Chen, Claudiu T. Supuran, 2012, BMC Systems Biology.

Multiple protein structure alignment by mean field annealing

Luonan Chen, Mituyasu Seo, J. Nakai, 2003, IEEE EMBS Asian-Pacific Conference on Biomedical Engineering, 2003..

Design of genetic switches with only positive feedback loops

Kazuyuki Aihara, Luonan Chen, Tetsuya Kobayashi, 2002, Proceedings. IEEE Computer Society Bioinformatics Conference.

The Dynamics of DNA Methylation Covariation Patterns in Carcinogenesis

Luonan Chen, Andrew E. Teschendorff, Martin Widschwendter, 2014, PLoS Comput. Biol..

Guest editorial. Computational systems biology.

Luonan Chen, 2013, IET systems biology.

CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data

Zhuo Wang, Xiujun Zhang, Zhi-Ping Liu, 2016, BMC Bioinformatics.

Chaotic simulated annealing by a neural network model with transient chaos

Kazuyuki Aihara, Luonan Chen, K. Aihara, 1995, Neural Networks.

Neural fate decisions mediated by trans-activation and cis-inhibition in Notch signaling

Kazuyuki Aihara, Luonan Chen, Ruiqi Wang, 2011, Bioinform..

Protein structure alignment by deterministic annealing

Luonan Chen, Tianshou Zhou, Yun Tang, 2005, Bioinform..

Comparative network stratification analysis for identifying functional interpretable network biomarkers

Juan Liu, Luonan Chen, Tao Zeng, 2017, BMC Bioinformatics.

Transient Resetting: A Novel Mechanism for Synchrony and Its Biological Examples

Kazuyuki Aihara, Luonan Chen, Chunguang Li, 2006, PLoS Comput. Biol..

Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis

Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang, 2011, ICIC.

Systems biology intertwines with single cell and AI

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2019, BMC Bioinform..

Multi-equilibrium property of metabolic networks: SSI module

Luonan Chen, Ji-Feng Zhang, Hong-Bo Lei, 2011, Proceedings of the 30th Chinese Control Conference.

Protein domain annotation with integration of heterogeneous information sources

Kazuyuki Aihara, Luonan Chen, Yong Wang, 2008, Proteins.

A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data

Zhi-Ping Liu, Luonan Chen, Katsuhisa Horimoto, 2012, 2012 IEEE 6th International Conference on Systems Biology (ISB).

Local network component analysis for quantifying transcription factor activities.

Juan Liu, Tao Zeng, Luonan Chen, 2017, Methods.

Dynamics of HBV model with intermittent antiviral therapy

Kazuyuki Aihara, Luonan Chen, Ben-gong Zhang, 2011, 2011 IEEE International Conference on Systems Biology (ISB).

NOA: a cytoscape plugin for network ontology analysis

Chao Zhang, Alexander R. Pico, Dong Xu, 2013, Bioinform..

Modelling biological systems from molecules to dynamical networks

Luonan Chen, Xiang-Sun Zhang, Yong Wang, 2012, BMC Systems Biology.

Biomolecular network querying: a promising approach in systems biology

Shi-Hua Zhang, Luonan Chen, Xiang-Sun Zhang, 2008, BMC Systems Biology.