Karlou Mar Amada

A Parzen window-based approach for the detection of locally enriched transcription factor binding sites

Shunsuke Teraguchi, Yutaro Kumagai, Daron M. Standley, 2013, BMC Bioinformatics.

Kotai Antibody Builder: automated high-resolution structural modeling of antibodies

Haruki Nakamura, Daron M. Standley, Shide Liang, 2014, Bioinform..

MAFFT-DASH: integrated protein sequence and structural alignment

Daron M. Standley, Kazutaka Katoh, Karlou Mar Amada, 2019, Nucleic Acids Res..

Quantifying sequence and structural features of protein–RNA interactions

Daron M. Standley, Kazuo Yamashita, Karlou Mar Amada, 2014, Nucleic acids research.

Bridging the gap between single-template and fragment based protein structure modeling using Spanner

Akira R. Kinjo, Haruki Nakamura, Srinivas Devadas, 2011 .