Arian F. A. Smit

RepeatModeler2: automated genomic discovery of transposable element families

Andrew G. Clark, Cédric Feschotte, Jullien M. Flynn, 2019, bioRxiv.

Dfam: a database of repetitive DNA based on profile hidden Markov models

Robert D. Finn, Sean R. Eddy, Thomas A. Jones, 2012, Nucleic Acids Res..

The Dfam database of repetitive DNA families

Robert D. Finn, Sean R. Eddy, Weidong Bao, 2015, Nucleic Acids Res..

Genome Organization

Gustavo Glusman, Arian F. A. Smit, A. Smit, 2009, Encyclopedia of Complexity and Systems Science.

A Third Approach to Gene Prediction Suggests Thousands of Additional Human Transcribed Regions

Jared C. Roach, Gustavo Glusman, Leroy E. Hood, 2006, PLoS Comput. Biol..

MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation

Arian F. A. Smit, Arthur D. Riggs, A. Smit, 1995, Nucleic Acids Res..

Chromosomal haplotypes by genetic phasing of human families.

Jared C. Roach, Gustavo Glusman, David J. Galas, 2011, American journal of human genetics.

Realistic artificial DNA sequences as negative controls for computational genomics

Gustavo Glusman, Leroy Hood, Arian F. A. Smit, 2014, Nucleic acids research.