Kyongbum Lee

发表

Tissue Engineering II

Kyongbum Lee, David L. Kaplan, 2007 .

PROXIMAL: a method for Prediction of Xenobiotic Metabolism

Soha Hassoun, Kyongbum Lee, Mona Yousofshahi, 2015, BMC Systems Biology.

Tendency Stoichiometric Modeling of Metabolic Pathways

Kyongbum Lee, F. Makrydaki, C. Georgakis, 2007, 2007 American Control Conference.

An algorithm for modularity analysis of directed and weighted biological networks based on edge-betweenness centrality

Kyongbum Lee, Anselm Blumer, Jeongah Yoon, 2006, Bioinform..

Identification of optimal classification functions for biological sample and state discrimination from metabolic profiling data

George Stephanopoulos, Kyongbum Lee, Gregory Stephanopoulos, 2004, Bioinform..

Emerging computational tools and models for studying gut microbiota composition and function.

Kyongbum Lee, Arul Jayaraman, Seo-Young Park, 2020, Current opinion in biotechnology.

Probabilistic strain optimization under constraint uncertainty

Soha Hassoun, Kyongbum Lee, Michael Orshansky, 2013, BMC Systems Biology.

Metabolic Flux Profiling of Reaction Modules in Liver Drug Transformation

Kyongbum Lee, Jeongah Yoon, 2007, Pacific Symposium on Biocomputing.

Gene modification identification under flux capacity uncertainty

Soha Hassoun, Kyongbum Lee, Michael Orshansky, 2013, 2013 50th ACM/EDAC/IEEE Design Automation Conference (DAC).

BIOINFORMATICS ORIGINAL PAPER doi:10.1093/bioinformatics/btm374 Systems biology Modular decomposition of metabolic reaction networks based on flux analysis and pathway projection

Kyongbum Lee, Jeongah Yoon, Yaguang Si, 2022 .

An algorithm for identifying dominant-edge metabolic pathways

Soha Hassoun, Ehsan Ullah, Kyongbum Lee, 2009, 2009 IEEE/ACM International Conference on Computer-Aided Design - Digest of Technical Papers.

An Advanced Workflow for Metabolite Annotation

Soha Hassoun, Kyongbum Lee, Neda Hassanpour, 2017, BCB.

Editorial overview: Tissue, cell and pathway engineering.

Kyongbum Lee, April Kloxin, 2016, Current opinion in biotechnology.

Tissue, cell and engineering.

Kyongbum Lee, Jeffrey A Hubbell, 2013, Current opinion in biotechnology.

Metabolic Flux-Based Modularity using Shortest Retroactive distances

Soha Hassoun, Kyongbum Lee, Gautham Vivek Sridharan, 2012, BMC Systems Biology.

Vascularization strategies for tissue engineering.

Kyongbum Lee, David L Kaplan, Michael Lovett, 2009, Tissue engineering. Part B, Reviews.

Discovery of substrate cycles in large scale metabolic networks using hierarchical modularity

Soha Hassoun, Ehsan Ullah, Kyongbum Lee, 2015, BMC Systems Biology.

PreProPath: An Uncertainty-Aware Algorithm for Identifying Predictable Profitable Pathways in Biochemical Networks

Soha Hassoun, Ehsan Ullah, Kyongbum Lee, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Identification of Biochemical Network Modules Based on Shortest Retroactive Distances

Soha Hassoun, Kyongbum Lee, Gautham Vivek Sridharan, 2011, PLoS Comput. Biol..

Utilizing elementary mode analysis, pathway thermodynamics, and a genetic algorithm for metabolic flux determination and optimal metabolic network design

Kyongbum Lee, Hai Shi, Blaine A. Pfeifer, 2010, BMC Systems Biology.

Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages

Kyongbum Lee, Martin L. Yarmush, Arul Jayaraman, 2018, Cell reports.

Phagocytosis and remodeling of collagen matrices.

Kyongbum Lee, David L Kaplan, Kyongbum Lee, 2007, Experimental cell research.

Systems biology of adipose tissue metabolism: regulation of growth, signaling and inflammation

Kyongbum Lee, Sara Manteiga, Arul Jayaraman, 2013, Wiley interdisciplinary reviews. Systems biology and medicine.

Dynamic model for CHO cell engineering.

Kyongbum Lee, Ryan Nolan, Kyongbum Lee, 2012, Journal of biotechnology.

Sequential Parameter Estimation for Mammalian Cell Model Based on In Silico Design of Experiments

Kyongbum Lee, Christos Georgakis, Zhenyu Wang, 2018, Processes.

Flux profile and modularity analysis of time-dependent metabolic changes of de novo adipocyte formation.

Kyongbum Lee, Jeongah Yoon, Yaguang Si, 2007, American journal of physiology. Endocrinology and metabolism.

Computational analysis of phenotypic space in heterologous polyketide biosynthesis--applications to Escherichia coli, Bacillus subtilis, and Saccharomyces cerevisiae.

Kyongbum Lee, Blaine A Pfeifer, Brett A Boghigian, 2010, Journal of theoretical biology.

Relationships between degradability of silk scaffolds and osteogenesis.

Kyongbum Lee, David L Kaplan, Eun Seok Gil, 2010, Biomaterials.

Adipose tissue engineering for soft tissue regeneration.

Kyongbum Lee, James J Yoo, David L Kaplan, 2010, Tissue engineering. Part B, Reviews.

Probabilistic pathway construction.

Soha Hassoun, Kyongbum Lee, Mona Yousofshahi, 2011, Metabolic engineering.

Automated Image Processing for Spatially Resolved Analysis of Lipid Droplets in Cultured 3T3-L1 Adipocytes.

Kyongbum Lee, James Kenneth Sims, Kyongbum Lee, 2014, Tissue engineering. Part C, Methods.

Impact of perturbed pyruvate metabolism on adipocyte triglyceride accumulation.

Kyongbum Lee, Yaguang Si, Kyongbum Lee, 2009, Metabolic engineering.

Extracellular matrix remodeling--methods to quantify cell-matrix interactions.

Kyongbum Lee, David L Kaplan, Kyongbum Lee, 2007, Biomaterials.

Hypoxia and amino acid supplementation synergistically promote the osteogenesis of human mesenchymal stem cells on silk protein scaffolds.

Kyongbum Lee, David L Kaplan, Sang-Hyug Park, 2010, Tissue engineering. Part A.

Biologically Consistent Annotation of Metabolomics Data.

Kyongbum Lee, Vladimir Porokhin, Ravali Raju, 2017, Analytical chemistry.

Adipocyte induction of preadipocyte differentiation in a gradient chamber.

Kyongbum Lee, Noo Li Jeon, Kyongbum Lee, 2012, Tissue engineering. Part C, Methods.

Quantitative metabolic imaging using endogenous fluorescence to detect stem cell differentiation

Kyongbum Lee, David L. Kaplan, Irene Georgakoudi, 2013, Scientific Reports.

Characterization of metabolic changes associated with the functional development of 3D engineered tissues by non-invasive, dynamic measurement of individual cell redox ratios.

Kyongbum Lee, Evangelia Bellas, Irene Georgakoudi, 2012, Biomaterials.