P. Fineran

发表

Evolution of virulence in a novel family of transmissible mega-plasmids.

M. Cox, P. Gardner, T. Glare, 2021, Environmental microbiology.

A nucleotidyltransferase toxin inhibits growth of Mycobacterium tuberculosis through inactivation of tRNA acceptor stems

C. Condon, O. Neyrolles, P. Genevaux, 2020, Science Advances.

Imprecise Spacer Acquisition Generates CRISPR-Cas Immune Diversity through Primed Adaptation.

Peter C. Fineran, P. C. Fineran, Simon A. Jackson, 2019, Cell host & microbe.

Spacer capture and integration by a type I-F Cas1–Cas2-3 CRISPR adaptation complex

A. Heck, R. Scheltema, R. Staals, 2017, Proceedings of the National Academy of Sciences.

CRISPR-Cas: Adapting to change

Stan J. J. Brouns, Peter C. Fineran, Rebecca E. McKenzie, 2017, Science.

Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR–Cas system

Chris M. Brown, Stan J. J. Brouns, Peter C. Fineran, 2016, Nature Communications.

Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer

Peter C. Fineran, Rebecca E. McKenzie, R. Staals, 2014, Nucleic acids research.

In Vivo Protein Interactions and Complex Formation in the Pectobacterium atrosepticum Subtype I-F CRISPR/Cas System

Peter C. Fineran, P. C. Fineran, Corinna Richter, 2012, PloS one.

Anticancer and immunosuppressive properties of bacterial prodiginines.

Peter C. Fineran, G. Salmond, P. C. Fineran, 2007, Future microbiology.

The biosynthesis and regulation of bacterial prodiginines

Finian J. Leeper, Peter C. Fineran, G. Salmond, 2006, Nature Reviews Microbiology.

Type III CRISPR–Cas provides resistance against nucleus-forming jumbo phages via abortive infection

Peter C. Fineran, P. C. Fineran, Simon A. Jackson, 2022, bioRxiv.

Conquering CRISPR: how phages overcome bacterial adaptive immunity.

P. C. Fineran, Lucia M Malone, N. Birkholz, 2020, Current opinion in biotechnology.

The arms race between bacteria and their phage foes

Peter C. Fineran, P. C. Fineran, Hannah G. Hampton, 2020, Nature.

A jumbo phage that forms a nucleus-like structure evades CRISPR–Cas DNA targeting but is vulnerable to type III RNA-based immunity

Peter C. Fineran, P. Gardner, P. C. Fineran, 2019, Nature Microbiology.

A nucleus-forming jumbophage evades CRISPR-Cas DNA targeting but is vulnerable to type III RNA-based immunity

P. Gardner, P. C. Fineran, Simon A. Jackson, 2019, bioRxiv.

Genome Sequence of a Jumbo Bacteriophage That Infects the Kiwifruit Phytopathogen Pseudomonas syringae pv. actinidiae

P. C. Fineran, H. Hendrickson, R. Frampton, 2019, Microbiology Resource Announcements.

Genome-wide correlation analysis suggests different roles of CRISPR-Cas systems in the acquisition of antibiotic resistance genes in diverse species

Chris M. Brown, P. C. Fineran, T. Chyou, 2019, Philosophical Transactions of the Royal Society B.

Cytotoxic Chromosomal Targeting by CRISPR/Cas Systems Can Reshape Bacterial Genomes and Expel or Remodel Pathogenicity Islands

Peter C. Fineran, P. C. Fineran, R. Przybilski, 2013, PLoS genetics.

A century of the phage: past, present and future

Peter C. Fineran, G. Salmond, P. C. Fineran, 2015, Nature Reviews Microbiology.

Inactivation of CRISPR-Cas systems by anti-CRISPR proteins in diverse bacterial species

Peter C. Fineran, Alan R Davidson, A. Davidson, 2016, Nature Microbiology.

A widespread bacteriophage abortive infection system functions through a Type IV toxin–antitoxin mechanism

G. Salmond, P. C. Fineran, R. Przybilski, 2014, Nucleic acids research.

Type I-F CRISPR-Cas resistance against virulent phages results in abortive infection and provides population-level immunity

G. Salmond, E. Westra, R. Staals, 2019, Nature Communications.

The autoregulator Aca2 mediates anti-CRISPR repression

P. C. Fineran, Simon A. Jackson, Robert D. Fagerlund, 2019, Nucleic acids research.

Type I-F CRISPR-Cas resistance against virulent phage infection triggers abortive infection and provides population-level immunity

G. Salmond, E. Westra, R. Staals, 2019, bioRxiv.

Resistance is not futile: bacterial 'innate' and CRISPR-Cas 'adaptive' immune systems.

P. C. Fineran, P. Fineran, 2019, Microbiology.

Bioinformatic evidence of widespread priming in type I and II CRISPR-Cas systems

Chris M. Brown, Peter C. Fineran, R. Staals, 2018, RNA biology.

Reconstitution of CRISPR adaptation in vitro and its detection by PCR.

K. Krause, Robert D. Fagerlund, T. Ferguson, 2019, Methods in enzymology.

Structural plasticity and in vivo activity of Cas1 from the type I-F CRISPR-Cas system.

Rebecca E. McKenzie, R. Staals, P. C. Fineran, 2016, The Biochemical journal.

Degenerate target sites mediate rapid primed CRISPR adaptation

Jos Boekhorst, Stan J. J. Brouns, Peter C. Fineran, 2014, Proceedings of the National Academy of Sciences.

Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum

Peter C. Fineran, P. C. Fineran, R. Przybilski, 2011, RNA biology.

Different genetic and morphological outcomes for phages targeted by single or multiple CRISPR-Cas spacers

G. Salmond, R. Staals, M. Bostina, 2019, Philosophical Transactions of the Royal Society B.

The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR–Cas immune systems

C. Sharma, T. Bischler, P. C. Fineran, 2021, Nucleic acids research.

GalK limits type I-F CRISPR-Cas expression in a CRP-dependent manner.

P. C. Fineran, Hannah G. Hampton, Corinda Taylor, 2019, FEMS microbiology letters.

Regulation of CRISPR-Cas adaptive immune systems.

P. C. Fineran, A. Patterson, Mariya S Yevstigneyeva, 2017, Current opinion in microbiology.

Regulation of the Type I-F CRISPR-Cas system by CRP-cAMP and GalM controls spacer acquisition and interference

P. C. Fineran, Corinda Taylor, A. Patterson, 2015, Nucleic acids research.

Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information.

Emmanuelle Charpentier, E. Charpentier, P. C. Fineran, 2012, Virology.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Stan J. J. Brouns, Daniel A. Cuevas, Abigail E. Asangba, 2019, bioRxiv.

Biotechnological exploitation of bacteriophage research.

Peter C. Fineran, Nicola K. Petty, G. Salmond, 2007, Trends in biotechnology.

PigZ, a TetR/AcrR family repressor, modulates secondary metabolism via the expression of a putative four‐component resistance‐nodulation‐cell‐division efflux pump, ZrpADBC, in Serratia sp. ATCC 39006

G. Salmond, P. C. Fineran, L. Everson, 2008, Molecular microbiology.

Structural rearrangements allow nucleic acid discrimination by type I-D Cascade

David W. Taylor, D. Wrapp, E. Schwartz, 2022, Nature Communications.

Diverse CRISPR-Cas Complexes Require Independent Translation of Small and Large Subunits from a Single Gene.

David W. Taylor, E. Schwartz, P. C. Fineran, 2020, Molecular cell.

Diverse CRISPR-Cas complexes require independent translation of small and large subunits from a single gene

David W. Taylor, E. Schwartz, P. C. Fineran, 2020, bioRxiv.

Diverse CRISPR-Cas complexes require independent translation of small and large subunits from a single gene

David W. Taylor, E. Schwartz, P. C. Fineran, 2020, bioRxiv.

The arms race between bacteria and their phage foes

P. C. Fineran, Hannah G. Hampton, B. N. Watson, 2020, Nature.

Transduction: Host DNA Transfer by Bacteriophages

Nicola K. Petty, G. Salmond, P. Fineran, 2009 .

CRISPRTarget

Chris M. Brown, Ambarish Biswas, Stan J. J. Brouns, 2013, RNA biology.

CRISPR-Cas-Mediated Phage Resistance Enhances Horizontal Gene Transfer by Transduction

R. Staals, P. C. Fineran, B. N. Watson, 2018, mBio.

Genome, Proteome and Structure of a T7-Like Bacteriophage of the Kiwifruit Canker Phytopathogen Pseudomonas syringae pv. actinidiae

V. Young, M. Bostina, P. C. Fineran, 2015, Viruses.

Identification of Bacteriophages for Biocontrol of the Kiwifruit Canker Phytopathogen Pseudomonas syringae pv. actinidiae

Nicola K. Petty, P. C. Fineran, R. Frampton, 2014, Applied and Environmental Microbiology.

Advances in Bacteriophage-Mediated Control of Plant Pathogens

Peter C. Fineran, P. C. Fineran, R. Frampton, 2012, International journal of microbiology.

Type I CRISPR-Cas provides robust immunity but incomplete attenuation of phage-induced cellular stress

X. Morgan, P. C. Fineran, Hannah G. Hampton, 2021, Nucleic acids research.

Quorum Sensing Controls Adaptive Immunity through the Regulation of Multiple CRISPR-Cas Systems

G. Evans, G. Salmond, R. Staals, 2016, Molecular cell.

The Cpf1 CRISPR-Cas protein expands genome-editing tools

Peter C. Fineran, R. Staals, Robert D. Fagerlund, 2015, Genome Biology.

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

Peter C. Fineran, Shiraz A. Shah, S. Sørensen, 2021, bioRxiv.

CRISPR–Cas systems: beyond adaptive immunity

Peter C. Fineran, A. Buckling, E. Westra, 2014, Nature Reviews Microbiology.

Transposon insertion libraries for the characterization of mutants from the kiwifruit pathogen Pseudomonas syringae pv. actinidiae

P. Gardner, M. Templeton, C. Mesarich, 2017, PloS one.

A Unified Resource for Tracking Anti-CRISPR Names.

J. Doudna, A. Davidson, B. Wiedenheft, 2018, The CRISPR journal.

CRISPRDetect: A flexible algorithm to define CRISPR arrays

Chris M. Brown, S. Morales, R. Staals, 2016, BMC Genomics.

The biology and type I/III hybrid nature of type I-D CRISPR–Cas systems

Robert D. Fagerlund, Tess M. McBride, P. Fineran, 2023, The Biochemical journal.

Remarkable Mechanisms in Microbes to Resist Phage Infections.

Peter C. Fineran, G. Salmond, P. C. Fineran, 2014, Annual review of virology.

Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems

Peter C. Fineran, A. Fire, P. C. Fineran, 2017, eLife.

Function and Regulation of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) / CRISPR Associated (Cas) Systems

Peter C. Fineran, P. C. Fineran, Corinna Richter, 2012, Viruses.

An OmpW-dependent T4-like phage infects Serratia sp. ATCC 39006

Stan J. J. Brouns, Daan F. van den Berg, Leah M. Smith, 2023, Microbial genomics.

Transduction: The Transfer of Host DNA by Bacteriophages

Nicola K. Petty, G. Salmond, Jessica M. Bergman, 2019, Reference Module in Biomedical Sciences.

Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements

Chris M. Brown, S. Sørensen, J. Bondy-Denomy, 2020, Nature Communications.

Discovery of multiple anti-CRISPRs uncovers anti-defense gene clustering in mobile genetic elements

Chris M. Brown, S. Sørensen, J. Bondy-Denomy, 2020, bioRxiv.

Targeting of temperate phages drives loss of type I CRISPR-Cas systems

Peter C. Fineran, S. Gandon, E. Westra, 2019, Nature.

Novel configurations of type I and II CRISPR-Cas systems in Corynebacterium diphtheriae.

P. Hoskisson, P. C. Fineran, V. Sangal, 2013, Microbiology.

Ribonucleases in bacterial toxin-antitoxin systems.

V. Arcus, P. C. Fineran, G. Cook, 2013, Biochimica et biophysica acta.

Phage-based biocontrol strategies and their application in agriculture and aquaculture.

Peter C. Fineran, P. C. Fineran, Luciano A. Rigano, 2018, Biochemical Society transactions.

Approaches for bacteriophage genome engineering.

Sam P. B. van Beljouw, Stan J. J. Brouns, A. R. Costa, 2022, Trends in biotechnology.

CRISPR-Cas gene-editing reveals RsmA and RsmC act through FlhDC to repress the SdhE flavinylation factor and control motility and prodigiosin production in Serratia

G. Salmond, M. Bostina, P. C. Fineran, 2016, Microbiology.

The conserved RGxxE motif of the bacterial FAD assembly factor SdhE is required for succinate dehydrogenase flavinylation and activity.

P. C. Fineran, Matthew B. McNeil, P. Fineran, 2013, Biochemistry.

SdhE Is a Conserved Protein Required for Flavinylation of Succinate Dehydrogenase in Bacteria*

Peter C. Fineran, G. Salmond, Matthew B. McNeil, 2012, The Journal of Biological Chemistry.

Biosynthesis of tripyrrole and β‐lactam secondary metabolites in Serratia: integration of quorum sensing with multiple new regulatory components in the control of prodigiosin and carbapenem antibiotic production

Peter C. Fineran, G. Salmond, H. Slater, 2005, Molecular microbiology.

A mobile restriction–modification system provides phage defence and resolves an epigenetic conflict with an antagonistic endonuclease

P. C. Fineran, Simon A. Jackson, Robert D. Fagerlund, 2022, Nucleic acids research.

Widespread repression of anti-CRISPR production by anti-CRISPR-associated proteins

P. C. Fineran, Saadlee Shehreen, Chris M Brown, 2022, Nucleic acids research.

A lipopolysaccharide‐dependent phage infects a pseudomonad phytopathogen and can evolve to evade phage resistance

M. Templeton, M. Bostina, P. C. Fineran, 2022, bioRxiv.

Identification and classification of bacterial Type III toxin–antitoxin systems encoded in chromosomal and plasmid genomes

Peter C. Fineran, K. Mizuguchi, G. Salmond, 2012, Nucleic acids research.

Mutagenesis and Functional Characterization of the RNA and Protein Components of the toxIN Abortive Infection and Toxin-Antitoxin Locus of Erwinia

G. Salmond, P. C. Fineran, I. Toth, 2009, Journal of bacteriology.

The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair

Kathryn S. Lilley, Peter C. Fineran, G. Salmond, 2009, Proceedings of the National Academy of Sciences.

Functional genomics reveals the toxin–antitoxin repertoire and AbiE activity in Serratia

P. C. Fineran, Simon A. Jackson, Hannah G. Hampton, 2020, Microbial genomics.

Viral Evasion of a Bacterial Suicide System by RNA–Based Molecular Mimicry Enables Infectious Altruism

G. Salmond, P. C. Fineran, R. Przybilski, 2012, PLoS genetics.

A processed noncoding RNA regulates an altruistic bacterial antiviral system

Peter C. Fineran, G. Salmond, X. Pei, 2011, Nature Structural &Molecular Biology.

Evolution of Pectobacterium Bacteriophage ΦM1 To Escape Two Bifunctional Type III Toxin-Antitoxin and Abortive Infection Systems through Mutations in a Single Viral Gene

G. Salmond, B. Luisi, P. C. Fineran, 2017, Applied and Environmental Microbiology.

Viral molecular mimicry circumvents abortive infection and suppresses bacterial suicide to make hosts permissive for replication

G. Salmond, P. C. Fineran, F. Short, 2012, Bacteriophage.

Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types

Franklin L. Nobrega, C. Ronson, P. C. Fineran, 2021, Nucleic acids research.

The PhoBR two-component system regulates antibiotic biosynthesis in Serratia in response to phosphate

G. Salmond, P. C. Fineran, L. Everson, 2009, BMC Microbiology.

Complete Genome Sequences of the Escherichia coli Donor Strains ST18 and MFDpir

P. C. Fineran, Simon A. Jackson, Bridget J Fellows, 2020, Microbiology Resource Announcements.

CRISPRTarget

Chris M. Brown, Stan J. J. Brouns, Joshua N. Gagnon, 2013, RNA Biology.

High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems

B. Dutilh, E. Westra, S. Morales, 2021, Current Biology.

CRISPR : methods and protocols

E. Charpentier, Magnus Lundgren, P. Fineran, 2015 .

CRISPR-Cas systems preferentially target the leading regions of MOBF conjugative plasmids

Sarah Neumann, Fernando de la Cruz, Stan J. J. Brouns, 2013, RNA biology.

The Rcs stress response inversely controls surface and CRISPR–Cas adaptive immunity to discriminate plasmids and phages

P. Gardner, P. C. Fineran, Simon A. Jackson, 2021, Nature Microbiology.

Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs

Chris M. Brown, Ambarish Biswas, Peter C. Fineran, 2014, Bioinform..

Computational Detection of CRISPR/crRNA Targets.

Chris M. Brown, P. C. Fineran, A. Biswas, 2015, Methods in molecular biology.

Complete DNA Sequence of Pseudomonas syringae pv. actinidiae, the Causal Agent of Kiwifruit Canker Disease

M. Templeton, P. C. Fineran, E. Rikkerink, 2015, Genome Announcements.

A GntR family transcriptional regulator (PigT) controls gluconate-mediated repression and defines a new, independent pathway for regulation of the tripyrrole antibiotic, prodigiosin, in Serratia.

Peter C. Fineran, G. Salmond, H. Slater, 2005, Microbiology.

Prokaryotic assembly factors for the attachment of flavin to complex II.

Peter C. Fineran, P. C. Fineran, Matthew B. McNeil, 2013, Biochimica et biophysica acta.

SorTn-seq: a high-throughput functional genomics approach to discovering regulators of bacterial gene expression

Peter C. Fineran, P. Gardner, P. C. Fineran, 2021, Nature Protocols.

Chromosomal targeting by CRISPR-Cas systems can contribute to genome plasticity in bacteria

Peter C. Fineran, P. C. Fineran, A. Pitman, 2013, Mobile genetic elements.

Biotechnological exploitation of bacteriophage research.

Nicola K. Petty, G. Salmond, T. J. Evans, 2007, Trends in biotechnology.

Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the Pseudomonas syringae species complex

Peter C. Fineran, M. Templeton, C. Mesarich, 2020, Environmental microbiology.

Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the P. syringae species complex

Peter C. Fineran, M. Templeton, C. Mesarich, 2020, bioRxiv.

Selectivity and self-assembly in the control of a bacterial toxin by an antitoxic noncoding RNA pseudoknot

Peter C. Fineran, G. Salmond, X. Pei, 2012, Proceedings of the National Academy of Sciences.

Type III CRISPR-Cas complexes act as protein-assisted ribozymes during target RNA cleavage

David W. Taylor, Caitlyn L. McCafferty, J. Brodbelt, 2023, Research Square.

Phage ΦPan70, a Putative Temperate Phage, Controls Pseudomonas aeruginosa in Planktonic, Biofilm and Burn Mouse Model Assays

P. C. Fineran, E. Kutter, Corinda Taylor, 2015, Viruses.

Molecular basis of dual anti-CRISPR and auto-regulatory functions of AcrIF24

H. H. Park, Y. Kim, P. C. Fineran, 2022, Nucleic acids research.

Molecular basis of anti-CRISPR operon repression by Aca10

H. H. Park, P. C. Fineran, So-Yeon Lee, 2022, Nucleic acids research.

Antitoxin autoregulation of M. tuberculosis toxin-antitoxin expression through negative cooperativity arising from multiple inverted repeat sequences

Peter C. Fineran, P. C. Fineran, T. R. Blower, 2020, The Biochemical journal.

YgfX (CptA) is a multimeric membrane protein that interacts with the succinate dehydrogenase assembly factor SdhE (YgfY).

Peter C. Fineran, P. C. Fineran, Matthew B. McNeil, 2013, Microbiology.

Virulence and Prodigiosin Antibiotic Biosynthesis in Serratia Are Regulated Pleiotropically by the GGDEF/EAL Domain Protein, PigX

G. Salmond, K. Lilley, P. C. Fineran, 2007, Journal of bacteriology.

CRISPRDetect: A flexible algorithm to define CRISPR arrays

Chris M. Brown, Ambarish Biswas, Peter C. Fineran, 2016, BMC Genomics.

Pectobacterium atrosepticum and Pectobacterium carotovorum Harbor Distinct, Independently Acquired Integrative and Conjugative Elements Encoding Coronafacic Acid that Enhance Virulence on Potato Stems

Peter C. Fineran, M. Fiers, C. Ronson, 2016, Front. Microbiol..

Bacteriophages suppress CRISPR-Cas immunity using RNA-based anti-CRISPRs.

J. Madsen, Robert D. Fagerlund, David Mayo-Muñoz, 2023, Nature.