Debswapna Bhattacharya

发表

Large-scale model quality assessment for improving protein tertiary structure prediction

Jilong Li, Renzhi Cao, Debswapna Bhattacharya, 2015, Bioinform..

3Drefine: an interactive web server for efficient protein structure refinement

Renzhi Cao, Debswapna Bhattacharya, Jianlin Cheng, 2016, Nucleic Acids Res..

DeepQA: improving the estimation of single protein model quality with deep belief networks

Jie Hou, Renzhi Cao, Debswapna Bhattacharya, 2016, BMC Bioinformatics.

Computational optimization algorithms for protein structure refinement

Debswapna Bhattacharya, 2014 .

clustQ: Efficient Protein Decoy Clustering Using Superposition-free Weighted Internal Distance Comparisons

Debswapna Bhattacharya, Rahul Alapati, Debswapna Bhattacharya, 2018, BCB.

DisCovER: distance- and orientation-based covariational threading for weakly homologous proteins

Debswapna Bhattacharya, Sutanu Bhattacharya, Rahmatullah Roche, 2020, bioRxiv.

The MULTICOM protein tertiary structure prediction system.

Jilong Li, Renzhi Cao, Debswapna Bhattacharya, 2014, Methods in molecular biology.

ConEVA: a toolbox for comprehensive assessment of protein contacts

Jie Hou, Debswapna Bhattacharya, Badri Adhikari, 2016, BMC Bioinformatics.

Does inclusion of residue‐residue contact information boost protein threading?

Debswapna Bhattacharya, Sutanu Bhattacharya, Debswapna Bhattacharya, 2019, Proteins.

UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling

Renzhi Cao, Debswapna Bhattacharya, Jianlin Cheng, 2016, Bioinform..

Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11

Jilong Li, Renzhi Cao, Debswapna Bhattacharya, 2016, Proteins.

Assessing Predicted Contacts for Building Protein Three-Dimensional Models.

Renzhi Cao, Debswapna Bhattacharya, Badri Adhikari, 2017, Methods in molecular biology.

De novo protein conformational sampling using a probabilistic graphical model

Debswapna Bhattacharya, Jianlin Cheng, Jianlin Cheng, 2015, Scientific Reports.

Protein Structure Refinement by Iterative Fragment Exchange

Debswapna Bhattacharya, Jianlin Cheng, Jianlin Cheng, 2013, BCB.

Experimentally motivated stepwise protein modeling via IOHMM sampling

Debswapna Bhattacharya, Jianlin Cheng, 2016 .

Probabilistic graphical models for protein structure prediction

Debswapna Bhattacharya, 2016 .

QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networks

Debswapna Bhattacharya, Sutanu Bhattacharya, Md Hossain Shuvo, 2020, bioRxiv.

Evaluating the significance of contact maps in low-homology protein modeling using contact-assisted threading

Debswapna Bhattacharya, Sutanu Bhattacharya, Debswapna Bhattacharya, 2020, Scientific Reports.

SPECS: Integration of side-chain orientation and global distance-based measures for improved evaluation of protein structural models

Debswapna Bhattacharya, Rahul Alapati, Md Hossain Shuvo, 2020, PloS one.

QAcon: single model quality assessment using protein structural and contact information with machine learning techniques

Miao Sun, Jie Hou, Renzhi Cao, 2016, Bioinform..

PolyFold: An interactive visual simulator for distance-based protein folding

Debswapna Bhattacharya, Sutanu Bhattacharya, Rahmatullah Roche, 2020, PloS one.

Automated protein structure refinement using i3Drefine software and its assessment in CASP10

Debswapna Bhattacharya, Jianlin Cheng, 2013, BCB.

Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins

Debswapna Bhattacharya, Sutanu Bhattacharya, Rahmatullah Roche, 2020, bioRxiv.

FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling

Jilong Li, Debswapna Bhattacharya, Badri Adhikari, 2016, Bioinform..

Contact-assisted Protein Threading: An Evolving New Direction

Debswapna Bhattacharya, Sutanu Bhattacharya, 2019, BCB.

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

Adam Liwo, Yi He, Jilong Li, 2018, Scientific Reports.

How Effective is Contact-assisted Protein Threading?

Debswapna Bhattacharya, Sutanu Bhattacharya, 2019, BCB.

refineD: improved protein structure refinement using machine learning based restrained relaxation

Debswapna Bhattacharya, Debswapna Bhattacharya, 2019, Bioinform..

QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networks

Debswapna Bhattacharya, Sutanu Bhattacharya, Md Hossain Shuvo, 2020, Bioinformatics.

Hybridized distance- and contact- based hierarchical protein structure modeling using DConStruct

Debswapna Bhattacharya, Rahmatullah Roche, Sutanu Bhattacharya, 2021, BCB.

20th International Workshop on Data Mining in Bioinformatics (BIOKDD 2021)

Mohammed J. Zaki, Debswapna Bhattacharya, Da Yan, 2021, KDD.

Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins

Debswapna Bhattacharya, Sutanu Bhattacharya, Rahmatullah Roche, 2021, PLoS Comput. Biol..

3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic‐level energy minimization

Debswapna Bhattacharya, Jianlin Cheng, Jianlin Cheng, 2013, Proteins.

i3Drefine Software for Protein 3D Structure Refinement and Its Assessment in CASP10

Debswapna Bhattacharya, Jianlin Cheng, Jianlin Cheng, 2013, PloS one.