Wouter Boomsma

Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling.

Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg, Anders Irbäck, 2014, Journal of chemical theory and computation.

A generative, probabilistic model of local protein structure

Jesper Ferkinghoff-Borg, Thomas Hamelryck, Kanti V Mardia, 2008, Proceedings of the National Academy of Sciences.

Monte Carlo Sampling of Protein Folding by Combining an All-Atom Physics-Based Model with a Native State Bias.

Kresten Lindorff-Larsen, Yong Wang, Pengfei Tian, 2018, The journal of physical chemistry. B.

ENCORE: Software for Quantitative Ensemble Comparison

Kresten Lindorff-Larsen, Matteo Tiberti, Wouter Boomsma, 2015, PLoS Comput. Biol..

Analyze Nucleic Acids Structures and Trajectories with Barnaba.

Giovanni Bussi, Sandro Bottaro, Wouter Boomsma, 2018 .