Natasa Przulj

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Mining the integrated connectedness of biomedical systems

Natasa Przulj, 2018 .

GraphCrunch 2: Software tool for network modeling, alignment and clustering

Aleksandar Stevanovic, Natasa Przulj, Oleksii Kuchaiev, 2011, BMC Bioinformatics.

Computational Methods for Analyzing and Modeling Biological Networks

Tijana Milenkovic, Natasa Przulj, T. Milenković, 2009 .

Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution

Süleyman Cenk Sahinalp, Natasa Przulj, Petra Berenbrink, 2006, Systems Biology and Computational Proteomics.

GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity

Natasa Przulj, Noël Malod-Dognin, Natasa Przulj, 2014, Bioinform..

Hereditary dominating pair graphs

Ekkehard Köhler, Natasa Przulj, Derek G. Corneil, 2004, Discret. Appl. Math..

Proper evaluation of alignment-free network comparison methods

Tijana Milenkovic, Natasa Przulj, Omer Nebil Yaveroglu, 2015, Bioinform..

Topology-function conservation in protein–protein interaction networks

Natasa Przulj, Aleksandar Stojmirovic, Noël Malod-Dognin, 2015, Bioinform..

Geometric Evolutionary Dynamics of Protein Interaction Networks

Aleksandar Stevanovic, Natasa Przulj, Oleksii Kuchaiev, 2010, Pacific Symposium on Biocomputing.

Predicting disease associations via biological network analysis

Natasa Przulj, Kai Sun, Joana P. Gonçalves, 2014, BMC Bioinformatics.

Functional topology in a network of protein interactions

Igor Jurisica, Natasa Przulj, Dennis A. Wigle, 2004, Bioinform..

Structure of brain functional networks

Zoran Nenadic, Po T. Wang, Natasa Przulj, 2009, 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Global Network Alignment

Natasa Przulj, Oleksii Kuchaiev, Natasa Przulj, 2010 .

Graphlet-based measures are suitable for biological network comparison

Natasa Przulj, Wayne Hayes, Kai Sun, 2013, Bioinform..

Protein complex prediction via cost-based clustering

Igor Jurisica, Natasa Przulj, Andrew D. King, 2004, Bioinform..

Minimum Average Time Broadcast Graphs

Arthur L. Liestman, Natasa Przulj, 1998, Parallel Process. Lett..

Biological network comparison using graphlet degree distribution

Natasa Przulj, Natasa Przulj, Natasa Przulj, 2007, Bioinform..

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets

Tijana Milenkovic, Natasa Przulj, Vesna Memisevic, 2010, BMC Systems Biology.

GraphCrunch: A tool for large network analyses

Tijana Milenkovic, Natasa Przulj, Jason Lai, 2008, BMC Bioinformatics.

Fuse: multiple network alignment via data fusion

Natasa Przulj, Vladimir Gligorijevic, Noël Malod-Dognin, 2014, Bioinform..

Modeling and alignment of biological networks

Natasa Przulj, Oleksii Kuchaiev, 2010 .

L-GRAAL: Lagrangian graphlet-based network aligner

Natasa Przulj, Noël Malod-Dognin, Natasa Przulj, 2015, Bioinform..

Patient-Specific Data Fusion for Cancer Stratification and Personalised Treatment

Natasa Przulj, Vladimir Gligorijevic, Noël Malod-Dognin, 2016, PSB.

Functional geometry of protein interactomes

Natasa Przulj, Noël Malod-Dognin, Natasa Przulj, 2019, Bioinform..

Complementarity of network and sequence information in homologous proteins

Tijana Milenkovic, Natasa Przulj, Vesna Memisevic, 2010, J. Integr. Bioinform..

Introduction to the Special Issue on Biological Networks

Natasa Przulj, 2011, Internet Math..

Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment‐free network comparison methods

Tijana Milenkovic, Natasa Przulj, Noël Malod-Dognin, 2017, Bioinform..

Biological network comparison using graphlet degree distribution

Natasa Przulj, 2010, Bioinform..

Integrative Data Analytic Framework to Enhance Cancer Precision Medicine

Natasa Przulj, Thomas Gaudelet, Noel Malod-Dognin, 2020, Network and systems medicine.

A framework for FPGA acceleration of large graph problems: Graphlet counting case study

Wayne Luk, David B. Thomas, Natasa Przulj, 2011, 2011 International Conference on Field-Programmable Technology.

Graph Theory Analysis of Protein–Protein Interactions

Natasa Przulj, Natasa Przulj, 2005 .

ergm.graphlets: A Package for ERG Modeling Based on Graphlet Statistics pdf

Athina Markopoulou, Natasa Przulj, Sean Fitzhugh, 2014, ArXiv.

Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution

Süleyman Cenk Sahinalp, Natasa Przulj, Petra Berenbrink, 2006, Systems Biology and Computational Proteomics.

Higher‐order molecular organization as a source of biological function

Natasa Przulj, Noël Malod-Dognin, Thomas Gaudelet, 2018, Bioinform..

Four algorithms to solve symmetric multi-type non-negative matrix tri-factorization problem pdf

Gregor Papa, Natasa Przulj, Janez Povh, 2020, Journal of Global Optimization.

2-Tree probe interval graphs have a large obstruction set

Natasa Przulj, Derek G. Corneil, 2005, Discret. Appl. Math..

The Topology of the Growing Human Interactome Data

Natasa Przulj, Vuk Janjic, Natasa Przulj, 2014, J. Integr. Bioinform..

Integration of molecular network data reconstructs Gene Ontology

Natasa Przulj, Vladimir Gligorijevic, Vuk Janjic, 2014, Bioinform..

An integrative approach to modeling biological networks

Tijana Milenkovic, Natasa Przulj, Vesna Memisevic, 2010, J. Integr. Bioinform..

Integrative network alignment reveals large regions of global network similarity in yeast and human

Natasa Przulj, Oleksii Kuchaiev, Natasa Przulj, 2011, Bioinform..

Learning the Structure of Protein-Protein Interaction Networks

Natasa Przulj, Oleksii Kuchaiev, 2009, Pacific Symposium on Biocomputing.

Graphlet Laplacians: graphlet-based neighbourhoods highlight topology-function and topology-disease relationships

Natasa Przulj, Noël Malod-Dognin, Sam F. L. Windels, 2018, bioRxiv.

Geometric De-noising of Protein-Protein Interaction Networks

Desmond J. Higham, Natasa Przulj, Oleksii Kuchaiev, 2009, PLoS Comput. Biol..

Predictive Functional Connectivity of Real-World Systems pdf

Natasa Przulj, Noël Malod-Dognin, Omer Nebil Yaveroglu, 2016, ArXiv.

Efficient estimation of graphlet frequency distributions in protein-protein interaction networks

Igor Jurisica, Natasa Przulj, Derek G. Corneil, 2006, Bioinform..

Modeling interactome: scale-free or geometric?

Igor Jurisica, Natasa Przulj, Derek G. Corneil, 2004, Bioinform..

Omics Data Complementarity Underlines Functional Cross-Communication in Yeast

Natasa Przulj, Noël Malod-Dognin, Natasa Przulj, 2017, J. Integr. Bioinform..

Fitting a geometric graph to a protein-protein interaction network

Desmond J. Higham, Natasa Przulj, Marija Rasajski, 2008, Bioinform..

Multi-project and Multi-profile joint Non-negative Matrix Factorization for cancer omic datasets

Natasa Przulj, Diego Azael Salazar, Carlos F. Valencia, 2021, Bioinform..

Linear functional organization of the omic embedding space

Natasa Przulj, Noël Malod-Dognin, Alexandros Xenos, 2021, Bioinform..

Random graph models and their application to protein-protein interaction networks

Desmond J. Higham, Natasa Przulj, D. Higham, 2011 .

Functional geometry of protein-protein interaction networks

Natasa Przulj, Natasa Przulj, N. Malod-Dognin, 2018, 1804.04428.

Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy.

Natasa Przulj, Lan Huang, Tijana Milenković, 2010, Journal of proteome research.

Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis

Tijana Milenkovic, Natasa Przulj, Lan Huang, 2008, Proceedings of the National Academy of Sciences.

Modelling protein–protein interaction networks via a stickiness index

Natasa Przulj, Desmond J Higham, D. Higham, 2006, Journal of The Royal Society Interface.

Analyzing large biological networks: protein-protein interactions example

Natasa Przulj, 2005 .