Francesca Finotello

发表

NeoFuse: predicting fusion neoantigens from RNA sequencing data

Zlatko Trajanoski, Georgios Fotakis, Dietmar Rieder, 2019, Bioinform..

Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data

Zlatko Trajanoski, Georgios Fotakis, Dietmar Rieder, 2020, bioRxiv.

quanTIseq: quantifying immune contexture of human tumors

Gerhard Laschober, Douglas B. Johnson, Dietmar Rieder, 2017 .

Comprehensive evaluation of cell-type quantification methods for immuno-oncology

Jan Baumbach, Jitao David Zhang, Markus List, 2018 .

Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing Data.

Markus List, Francesca Finotello, Gregor Sturm, 2020, Methods in molecular biology.

Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology

Jan Baumbach, Jitao David Zhang, Markus List, 2019, Bioinform..

Scirpy: A Scanpy extension for analyzing single-cell T-cell receptor sequencing data

Zlatko Trajanoski, Georgios Fotakis, Dietmar Rieder, 2020, bioRxiv.

Interpretable systems biomarkers predict response to immune-checkpoint inhibitors

Peter A. J. Hilbers, Federica Eduati, Francesca Finotello, 2021, Patterns.

Predictive Systems Biomarkers of Response to Immune Checkpoint Inhibitors

Federica Eduati, Francesca Finotello, Óscar Lapuente-Santana, 2021, SSRN Electronic Journal.

Pan-cancer immunogenomic analyses reveal genotype-immunophenotype relationships and predictors of response to checkpoint blockade

Zlatko Trajanoski, Clemens Mayer, Mirjana Efremova, 2016, bioRxiv.

Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Yu Wang, Zlatko Trajanoski, Clemens Mayer, 2017, Genome Medicine.

Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution

Zlatko Trajanoski, Martin Löwer, Mirjana Efremova, 2018, Nature Communications.