Joëlle Barido‐Sottani

发表

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

Sebastián Duchêne, Graham Jones, Igor Siveroni, 2018, bioRxiv.

Convergent adaptation of true crabs (Decapoda: Brachyura) to a gradient of terrestrial environments

K. Crandall, Brent Thoma, H. Bracken-Grissom, 2023, bioRxiv.

Improved multi-type birth-death phylodynamic inference in BEAST 2

Tanja Stadler, Joëlle Barido-Sottani, Denise Kühnert, 2020, bioRxiv.

RevGadgets: an R Package for visualizing Bayesian phylogenetic analyses from RevBayes

William A. Freyman, Michael J. Landis, B. T. Kopperud, 2021, bioRxiv.

A Multitype Birth–Death Model for Bayesian Inference of Lineage-Specific Birth and Death Rates

T. Vaughan, T. Stadler, Joëlle Barido-Sottani, 2020, Systematic biology.

FossilSim: An r package for simulating fossil occurrence data under mechanistic models of preservation and recovery

W. Pett, R. Warnock, Joëlle Barido-Sottani, 2019, Methods in Ecology and Evolution.

Taming the BEAST—A Community Teaching Material Resource for BEAST 2

David A. Rasmussen, Nicola F. Müller, O. Pybus, 2017, Systematic Biology.

Robust Phylodynamic Analysis of Genetic Sequencing Data from Structured Populations

T. Vaughan, T. Stadler, J. Scire, 2022, bioRxiv.

Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth–death model

Tanja Stadler, Joëlle Barido-Sottani, Timothy G. Vaughan, 2018, Journal of The Royal Society Interface.

Seven rules for simulations in paleobiology

A. Wright, L. Soul, E. Saupe, 2020, Paleobiology.

Integrating Fossil Observations Into Phylogenetics Using the Fossilized Birth–Death Model

A. Wright, R. Warnock, Joëlle Barido-Sottani, 2022, Annual Review of Ecology, Evolution, and Systematics.

Ignoring Fossil Age Uncertainty Leads to Inaccurate Topology and Divergence Time Estimates in Time Calibrated Tree Inference

T. Stadler, R. Warnock, Joëlle Barido-Sottani, 2020, Frontiers in Ecology and Evolution.

A. Mushegian, Joëlle Barido-Sottani, E. Kosman, 2019, BMC Bioinformatics.

Lessons learned from organizing and teaching virtual phylogenetics workshops

Jeremy M. Brown, Joshua A. Justison, P. Lewis, 2022 .

Taming the BEAST—A Community Teaching Material Resource for BEAST 2

David A. Rasmussen, Nicola F. Müller, O. Pybus, 2017, Systematic biology.

Arcady R. Mushegian, Joëlle Barido-Sottani, Samuel D. Chapman, 2019, BMC Bioinformatics.

The Occurrence Birth–Death Process for Combined-Evidence Analysis in Macroevolution and Epidemiology

Ankit Gupta, T. Stadler, R. Warnock, 2022, Systematic biology.

A skyline birth-death process for inferring the population size from a reconstructed tree with occurrences

Ankit Gupta, T. Stadler, R. Warnock, 2020, bioRxiv.

Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth–death process

T. Stadler, R. Warnock, Joëlle Barido-Sottani, 2018, bioRxiv.

Estimating the Age of Poorly Dated Fossil Specimens and Deposits Using a Total-Evidence Approach and the Fossilized Birth-Death Process

T. Heath, Joëlle Barido-Sottani, D. Żyła, 2021, bioRxiv.

Putting the F in FBD analyses: tree constraints or morphological data ?

K. De Baets, R. Warnock, Joëlle Barido-Sottani, 2022, bioRxiv.

EvoPhylo: An r package for pre‐ and postprocessing of morphological data from relaxed clock Bayesian phylogenetics

S. Pierce, T. Simões, N. Greifer, 2023, Methods in Ecology and Evolution.

Ignoring fossil age uncertainty leads to inaccurate topology and divergence times in time calibrated tree inference

T. Stadler, R. Warnock, Joëlle Barido-Sottani, 2020, bioRxiv.

The ClaDS rate-heterogeneous birth–death prior for full phylogenetic inference in BEAST2

H. Morlon, Joëlle Barido‐Sottani, 2023, Systematic biology.

Accurate detection of HIV transmission clusters from phylogenetic trees using a multi-state birth-death model

Tanja Stadler, Joëlle Barido-Sottani, Joëlle Barido‐Sottani, 2017, bioRxiv.

Practical guidelines for Bayesian phylogenetic inference using Markov chain Monte Carlo (MCMC)

R. Warnock, Orlando Schwery, Joëlle Barido‐Sottani, 2023, Open research Europe.

Putting the F into FBD analysis: tree constraints or morphological data?

R. Warnock, K. Baets, Alexander Pohle, 2023, Palaeontology.

Putting the F in FBD analyses: tree constraints or morphological 1 data ? 2

R. Warnock, K. Baets, Joëlle Barido‐Sottani, 2022 .

Putting the F in FBD analyses: tree constraints or morphological 1 data ? 2

R. Warnock, K. Baets, Joëlle Barido‐Sottani, 2022 .

Convergent Adaptation of True Crabs (Decapoda: Brachyura) to a Gradient of Terrestrial Environments

K. Crandall, Brent Thoma, H. Bracken-Grissom, 2023, bioRxiv.

A Multi-State Birth-Death model for Bayesian inference of lineage-specific birth and death rates

T. Vaughan, T. Stadler, Joëlle Barido-Sottani, 2018, bioRxiv.