D. Murphy

发表

KLF4 is involved in the organization and regulation of pluripotency-associated three-dimensional enhancer networks

Aristotelis Tsirigos, Andreas Kloetgen, Alexander Polyzos, 2019, Nature Cell Biology.

Functional filter for whole genome sequence data identifies stress impact, non-coding, alternate polyadenylation site variants >5kb from coding DNA

M. Caulfield, C. Shovlin, A. Mumford, 2023, medRxiv.

Single-cell analysis of bidirectional reprogramming between early embryonic states reveals mechanisms of differential lineage plasticities

M. Setty, Roshan Sharma, A. Hadjantonakis, 2023, bioRxiv.

Dynamic 3D Chromatin Reorganization during Establishment and Maintenance of Pluripotency

E. Apostolou, B. Pelham-Webb, Dylan Murphy, 2020, Stem cell reports.

Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression

A. Tsirigos, A. Hadjantonakis, A. Kloetgen, 2023, bioRxiv.

Discovery of Competent Chromatin Regions in Human Embryonic Stem Cells

C. Leslie, Danwei Huangfu, F. Gonzãlez, 2023, bioRxiv.

Dynamic network-guided CRISPRi screen reveals CTCF loop-constrained nonlinear enhancer-gene regulatory activity in cell state transitions

Michael A. Beer, M. Beer, Thomas Vierbuchen, 2023, bioRxiv.

Dynamic network-guided CRISPRi screen identifies CTCF-loop-constrained nonlinear enhancer gene regulatory activity during cell state transitions

Michael A. Beer, Thomas Vierbuchen, Danwei Huangfu, 2023, Nature Genetics.

KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency

Noah Dephoure, A. Tsirigos, A. Kloetgen, 2018 .