Deborah A Chasman

发表

Islam and the Challenge of Democracy: A "Boston Review" Book

Deborah Chasman, K. Fadl, Joshua Cohen, 2004 .

Identification of FMR1-regulated molecular networks in human neurodevelopment

Deborah Chasman, Sushmita Roy, Xinyu Zhao, 2020, Genome research.

Physiological Responses and Gene Co-Expression Network of Mycorrhizal Roots under K+ Deprivation1[OPEN]

Deborah Chasman, Sushmita Roy, K. Garcia, 2017, Plant Physiology.

Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals1[OPEN]

Alireza F. Siahpirani, Deborah Chasman, Sang Cheol Kim, 2015, Plant Physiology.

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response

Deborah Chasman, Anthony Gitter, Matthew E. MacGilvray, 2017, bioRxiv.

Network-based approaches for analysis of complex biological systems.

Deborah Chasman, Sushmita Roy, Alireza Fotuhi Siahpirani, 2016, Current opinion in biotechnology.

In silico prediction of high-resolution Hi-C interaction matrices

Deborah Chasman, Sushmita Roy, Shilu Zhang, 2018, Nature Communications.

Dynamic regulatory module networks for inference of cell type–specific transcriptional networks

Sara A. Knaack, R. Stewart, J. Thomson, 2020, bioRxiv.

Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development.

Brian E. McIntosh, Mitchell D. Probasco, R. Stewart, 2019, Cell systems.

Augmenting subnetwork inference with information extracted from the scientific literature

Mark W. Craven, Deborah Chasman, Hoifung Poon, 2019, PLoS Comput. Biol..

Inferring Host Gene Subnetworks Involved in Viral Replication

Mark Craven, Deborah Chasman, Brandi Gancarz, 2014, PLoS Comput. Biol..

Improving the interpretability of integer linear programming methods for biological subnetwork inference

Deborah Chasman, Deborah Chasman, Deborah A Chasman, 2014 .

Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens

Deborah Chasman, Amie J. Eisfeld, Yoshihiro Kawaoka, 2016, PLoS Comput. Biol..

Multi-task consensus clustering of genome-wide transcriptomes from related biological conditions

Deborah Chasman, Sushmita Roy, Amie J. Eisfeld, 2016, Bioinform..

Multiomic analysis reveals decidual‐specific transcriptional programing of MAIT cells

J. Vazquez, Melina Chavarria, A. K. Stanic, 2021, American journal of reproductive immunology.

A predictive modeling approach for cell line-specific long-range regulatory interactions

Alireza F. Siahpirani, Sara A. Knaack, R. Stewart, 2015, Nucleic acids research.

Pathway connectivity and signaling coordination in the yeast stress-activated signaling network

David B. Berry, M. Craven, A. Gasch, 2014, Molecular systems biology.

Deciphering the Role of 3D Genome Organization in Breast Cancer Susceptibility

Deborah Chasman, Sushmita Roy, Brittany Baur, 2022, Frontiers in Genetics.

Integrative Genomic Analysis Predicts Causative Cis-Regulatory Mechanisms of the Breast Cancer-Associated Genetic Variant rs4415084.

Jun S. Song, Deborah Chasman, Sushmita Roy, 2018, Cancer research.

Inference of cell type specific regulatory networks on mammalian lineages.

Deborah Chasman, Sushmita Roy, Deborah Chasman, 2017, Current opinion in systems biology.

Explaining Effects of Host Gene Knockouts on Brome Mosaic Virus Replication

Mark Craven, Deborah Chasman, Brandi Gancarz, 2009 .

Integrative Approaches for Inference of Genome-Scale Gene Regulatory Networks.

Deborah Chasman, Alireza F. Siahpirani, Sushmita Roy, 2018, Methods in molecular biology.

Distinct innate immune cell maturation during the first year of life is associated with farm exposure: 905

Kathrine L. Barnes, Casper G Bendixsen, I. Ong, 2019, Journal of Allergy and Clinical Immunology.

A predictive modeling approach for cell line-specific long-range regulatory interactions

Alireza F. Siahpirani, R. Stewart, F. Ay, 2015, Nucleic acids research.

Transcriptional and Functional Programming of Decidual Innate Lymphoid Cells

Deborah Chasman, I. Ong, J. Vazquez, 2020, Frontiers in Immunology.

Network-based approaches for analysis of complex biological systems.

Sushmita Roy, Alireza Fotuhi Siahpirani, Deborah A Chasman, 2016, Current opinion in biotechnology.

The inconvenience of data of convenience: computational research beyond post-mortem analyses

Krister Wennerberg, Tero Aittokallio, Emmanuel Barillot, 2017, Nature Methods.

Integrative Genomic Analysis Predicts Causative Cis-Regulatory Mechanisms of the Breast Cancer-Associated Genetic Variant rs4415084.

Jun S. Song, Sushmita Roy, Yi Zhang, 2018, Cancer research.