Adam Frankish

发表

Determination and validation of principal gene products

Alfonso Valencia, Jennifer L. Harrow, Michael L. Tress, 2008, Bioinform..

The importance of identifying alternative splicing in vertebrate genome annotation

Jennifer L. Harrow, Mark Thomas, Jonathan M. Mudge, 2012, Database J. Biol. Databases Curation.

The Vertebrate Genome Annotation browser 10 years on

Jane Loveland, James G. R. Gilbert, Jennifer L. Harrow, 2013, Nucleic Acids Res..

Current status and new features of the Consensus Coding Sequence database

David Haussler, Jane Loveland, James G. R. Gilbert, 2013, Nucleic Acids Res..

Affiliations: 1. Unidad de Proteómica, Centro Nacional de Investigaciones Cardiovasculares,

Alfonso Valencia, Jennifer Harrow, Michael L. Tress, 2014 .

GENCODE reference annotation for the human and mouse genomes

Mark Gerstein, Tomás Di Domenico, Jane Loveland, 2018, Nucleic Acids Res..

Ensembl 2019

Astrid Gall, Alessandro Vullo, Jane Loveland, 2018, Nucleic Acids Res..

Tracking and coordinating an international curation effort for the CCDS Project

Jane Loveland, Jennifer L. Harrow, Mark Diekhans, 2012, Database J. Biol. Databases Curation.

The Mouseion at the JAXlibrary

Carol J. Bult, John Jackson, Mark Diekhans, 2022 .

Ensembl 2018

Astrid Gall, Alessandro Vullo, Jane Loveland, 2017, Nucleic Acids Res..

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases

Robert D. Finn, Alex Bateman, Artemis G. Hatzigeorgiou, 2020, Nucleic Acids Res..

The value of primary transcripts to the clinical and non-clinical genomics community: survey results and roadmap for improvements.

Jane Loveland, Aoife McMahon, Joannella Morales, 2021 .

Ensembl 2021

Astrid Gall, James E. Allen, Daniel R. Zerbino, 2020, Nucleic Acids Res..

Perspectives on ENCODE

Xintao Wei, Christopher B. Burge, Jason Liu, 2020, Nature.

The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates

Jonathan M. Mudge, Jennifer Harrow, Roderic Guigó, 2011, Molecular biology and evolution.

Functional transcriptomics in the post-ENCODE era

Jonathan M. Mudge, Jennifer Harrow, Adam Frankish, 2013, Genome research.

RNAcentral: a hub of information for non-coding RNA sequences

Alex Bateman, Guy Cochrane, Janusz M Bujnicki, 2018, Nucleic Acids Res..

Gene inactivation and its implications for annotation in the era of personal genomics.

Mark Gerstein, Jennifer Harrow, Daniel G MacArthur, 2011, Genes & development.

MacArthur Protein-Coding Genes A Systematic Survey of Loss-of-Function Variants in Human

Klaudia Walter, Joseph K. Pickrell, Jennifer Harrow, 2012 .

Comparative Proteomics Reveals a Significant Bias Toward Alternative Protein Isoforms with Conserved Structure and Function

Alfonso Valencia, Jennifer Harrow, Michael L. Tress, 2012, Molecular biology and evolution.

Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229]

Robert D. Finn, James R. Cole, Alex Bateman, 2019 .

Comparative analysis of pseudogenes across three phyla

Yan Zhang, Mark Diekhans, Jennifer Harrow, 2014, Proceedings of the National Academy of Sciences.

Quantifying the mechanisms of domain gain in animal proteins

Alex Bateman, Adam Frankish, Marija Buljan, 2010, Genome Biology.

The shrinking human protein coding complement: are there now fewer than 20,000 genes?

Alfonso Valencia, Mark Diekhans, Jennifer Harrow, 2013, bioRxiv.

Efficient targeted transcript discovery via array-based normalization of RACE libraries

Sylvain Foissac, Philipp Kapranov, Thomas R. Gingeras, 2008, Nature Methods.

Comparative Analysis of the Transcriptome across Distant Species

Peter J. Bickel, Raymond K. Auerbach, Peter J. Park, 2014, Nature.

High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read Sequencing

Jennifer Harrow, Roderic Guigo, Thomas R Gingeras, 2017, Nature Genetics.

The implications of alternative splicing in the ENCODE protein complement

Hagen Blankenburg, Fidel Ramírez, Thomas Lengauer, 2007, Proceedings of the National Academy of Sciences.

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment

Uwe Ohler, Jennifer Harrow, Sin Lam Tan, 2006, Genome Biology.

Ensembl 2020

Astrid Gall, Alessandro Vullo, James E. Allen, 2019, Nucleic Acids Res..

RNAcentral: a comprehensive database of non-coding RNA sequences

Alex Bateman, Eva Huala, Guy Cochrane, 2016, Nucleic acids research.

Sixteen diverse laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

Mark Gerstein, Jane Loveland, Dent Earl, 2018, Nature Genetics.

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

Mark Gerstein, Jane Loveland, Dent Earl, 2018, bioRxiv.

Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence

Matthias Platzer, Markus Schilhabel, Adam Frankish, 2004, BMC Genomics.

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution.

Philipp Kapranov, Jennifer Harrow, Roderic Guigó, 2007, Genome research.