Yingjia Shen

发表

The acute toxic effects of hexavalent chromium on the liver of marine medaka (Oryzias melastigma).

Mengke Pei, Y. Shen, Pingping Liang, 2020, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

Global transcriptomic analysis of zebrafish in response to embryonic exposure to three antidepressants, amitriptyline, fluoxetine and mianserin.

Ming Yang, Minghong Wu, Chenyuan Pan, 2017, Aquatic toxicology.

UVB-induced gene expression in the skin of Xiphophorus maculatus Jp 163 B.

D. Mitchell, R. Walter, Kuan Yang, 2014, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

The genomic and transcriptomic foundations of viviparous seed development in mangroves

Congting Ye, Q. Li, Wenqing Wang, 2020, bioRxiv.

Whole Body Melanoma Transcriptome Response in Medaka

R. Wilson, J. Postlethwait, M. Schartl, 2015, PloS one.

Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination

Xiaohui Wu, Q. Li, Y. Shen, 2017, The Plant journal : for cell and molecular biology.

A comparison of 25 complete chloroplast genomes between sister mangrove species Kandelia obovata and Kandelia candel geographically separated by the South China Sea

W. Ng, Luzhen Chen, Md. Nazrul Islam, 2023, Frontiers in Plant Science.

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

Richa Agarwala, Manfred Schartl, John H. Postlethwait, 2016, BMC Genomics.

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

Angel Amores, Manfred Schartl, John H. Postlethwait, 2013, Nature Genetics.

Ratio-Based Analysis of Differential mRNA Processing and Expression of a Polyadenylation Factor Mutant pcfs4 Using Arabidopsis Tiling Microarray

Guoli Ji, Xiaohui Wu, Q. Li, 2011, PloS one.

Transcriptome profiling during mangrove viviparity in response to abscisic acid

Congting Ye, Q. Li, Liwei Hong, 2018, Scientific Reports.

Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids.

A. Amores, J. Postlethwait, M. Schartl, 2012, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

Long-read sequencing and de novo genome assembly of marine medaka (Oryzias melastigma)

Y. Shen, Pingping Liang, X. Ni, 2020, BMC Genomics.

RNA-Seq reveals complex genetic response to deepwater horizon oil release in Fundulus grandis

Andrew Whitehead, Yingjia Shen, Ronald B Walter, 2012, BMC Genomics.

Physiological and transcriptomic responses to cold waves of the most cold-tolerant mangrove, Kandelia obovata

L. Wang, Pingping Liang, Yuan‐Ye Zhang, 2023, Frontiers in Plant Science.

Physical Mapping and Refinement of the Painted Turtle Genome (Chrysemys picta) Inform Amniote Genome Evolution and Challenge Turtle-Bird Chromosomal Conservation

L. Hillier, P. Minx, W. Warren, 2015, Genome biology and evolution.

Distinct genome-wide alternative polyadenylation during the response to silicon availability in the marine diatom Thalassiosira pseudonana.

Guoli Ji, Peng Wang, Junrong Liang, 2019, The Plant journal : for cell and molecular biology.

amniote genome evolution and challenges turtle-bird chromosomal conservation

L. Hillier, P. Minx, W. Warren, 2015 .

Genome-wide dynamics of alternative polyadenylation in rice

Guoli Ji, Xinfu Ye, Yingjia Shen, 2016, Genome research.

Next Generation Sequencing in Aquatic Models

Yuan Lu, Yingjia Shen, Ronald B. Walter, 2016 .

Chapter 2 Next Generation Sequencing in Aquatic Models

Yuan Lu, Yingjia Shen, Wesley Warren, 2017 .

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.

B. Meyers, Guoli Ji, Xiaohui Wu, 2011, Genome research.

Gene Expression Analysis Using RNA-Seq from Organisms Lacking Substantial Genomic Resources

Yingjia Shen, T. Garcia, Ronald B. Walter, 2011 .

Transcriptome profiling during mangrove viviparity in response to abscisic acid

Congting Ye, Q. Li, Liwei Hong, 2018, Scientific Reports.

Unique Features of Nuclear mRNA Poly(A) Signals and Alternative Polyadenylation in Chlamydomonas reinhardtii

Chun Liang, Yingjia Shen, Yuansheng Liu, 2008, Genetics.

Genome level analysis of rice mRNA 3′-end processing signals and alternative polyadenylation

Guoli Ji, Jianti Zheng, Yingjia Shen, 2008, Nucleic acids research.

Predictive modeling of plant messenger RNA polyadenylation sites

Xiaohui Wu, Qingshun Quinn Li, Guoli Ji, 2007, BMC Bioinformatics.

A classification-based prediction model of messenger RNA polyadenylation sites.

Guoli Ji, Jiangyin Huang, Yingjia Shen, 2010, Journal of theoretical biology.

RNA-seq analyses of Marine Medaka (Oryzias melastigma) reveals salinity responsive transcriptomes in the gills and livers.

Yuting Qiu, Yuting Xie, Pingping Liang, 2021, Aquatic toxicology.

Expressed Sequence Tags With cDNA Termini: Previously Overlooked Resources for Gene Annotation and Transcriptome Exploration in Chlamydomonas reinhardtii

Chun Liang, Yingjia Shen, Yuansheng Liu, 2008, Genetics.

Alternative polyadenylated mRNAs behave as asynchronous rhythmic transcription in Arabidopsis

Congting Ye, Q. Li, Zhibo Yu, 2021, RNA biology.

Transgenerational Effects of Hexavalent Chromium on Marine Medaka (Oryzias melastigma) Reveal Complex Transgenerational Adaptation in Offspring

X. Ni, Yingjia Shen, Yingjia Shen, 2021, Biomolecules.