Simone Sidoli

发表

Label-free absolute quantification of proteomes: evaluation and comparison of bioinformatics platforms and strategies

Veit Schwämmle, Albert Casanovas, Richard R. Sprenger, 2012 .

Graphical Interpretation and Analysis of Proteins and their Ontologies (GiaPronto): A One-Click Graph Visualization Software for Proteomics Data Sets *

Simone Sidoli, Sharon J Diskin, Amber K Weiner, 2017, Molecular & Cellular Proteomics.

Nuclear phosphoproteome analysis of 3T3‐L1 preadipocyte differentiation reveals system‐wide phosphorylation of transcriptional regulators

Veit Schwämmle, Adelina Rogowska-Wrzesinska, Jie Dai, 2017, Proteomics.

Single Cell Proteomics to Study Embryonic Asymmetry in Xenopus laevis Embryos.

Jing Yang, Benjamin A. Garcia, Simone Sidoli, 2019, Analytical chemistry.

Proteomics in chromatin biology and epigenetics: Elucidation of post-translational modifications of histone proteins by mass spectrometry.

Ole N Jensen, Simone Sidoli, O. Jensen, 2012, Journal of proteomics.

Two distinct modes for propagation of histone PTMs across the cell cycle

Ole N Jensen, Simone Sidoli, Andreas Schmidt, 2015, Genes & development.

High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells.

Simone Sidoli, Benjamin A Garcia, B. Garcia, 2016, Molecular cell.

KYSS: mass spectrometry data quality assessment for protein analysis and large-scale proteomics.

Simone Sidoli, Ole Nørregaard Jensen, O. Jensen, 2014, Biochemical and biophysical research communications.

Transcription factor cooperativity in early adipogenic hotspots and super-enhancers.

Adelina Rogowska-Wrzesinska, Ole N Jensen, Simone Sidoli, 2014, Cell reports.

Deep profiling and custom databases improve detection of proteoforms generated by alternative splicing

Matthew R. Gazzara, Simone Sidoli, Benjamin A Garcia, 2019, Genome research.

Precision mapping of coexisting modifications in histone H3 tails from embryonic stem cells by ETD-MS/MS.

Veit Schwämmle, Kristian Helin, Ole N Jensen, 2013, Analytical chemistry.

Analyses of Histone Proteoforms Using Front-end Electron Transfer Dissociation-enabled Orbitrap Instruments*

Lissa C Anderson, Simone Sidoli, Benjamin A Garcia, 2016, Molecular & Cellular Proteomics.

A Rapid Size-Exclusion Solid-Phase Extraction Step for Enhanced Sensitivity in Multi-Allergen Determination in Dark Chocolate and Biscuits by Liquid Chromatography–Tandem Mass Spectrometry

Maria Careri, Simone Sidoli, Monica Mattarozzi, 2013, Food Analytical Methods.

Bottom-up and middle-down proteomics have comparable accuracies in defining histone post-translational modification relative abundance and stoichiometry.

Simone Sidoli, Benjamin A Garcia, B. Garcia, 2015, Analytical chemistry.

Large Scale Analysis of Co-existing Post-translational Modifications in Histone Tails Reveals Global Fine Structure of Cross-talk*

Veit Schwämmle, Ole N Jensen, Simone Sidoli, 2014, Molecular & Cellular Proteomics.

Middle-down proteomics: a still unexploited resource for chromatin biology

Simone Sidoli, Benjamin A Garcia, B. Garcia, 2017, Expert review of proteomics.

Time-resolved Global and Chromatin Proteomics during Herpes Simplex Virus Type 1 (HSV-1) Infection*

Eui Tae Kim, Simone Sidoli, Benjamin A Garcia, 2017, Molecular & Cellular Proteomics.

Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH) Analysis for Characterization and Quantification of Histone Post-translational Modifications*

Eric Johansen, Lei Xiong, Christie Hunter, 2015, Molecular & Cellular Proteomics.

Middle‐down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post‐translational modifications in histones

Veit Schwämmle, Kristian Helin, Ole N Jensen, 2014, Proteomics.