I. Keenum

Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes

Liqing Zhang, A. Pruden, P. Vikesland, 2021, Scientific Reports.

Salmonella, Enteric Fevers, and Salmonellosis

B. Vinnerås, A. Nordin, R. Hasan, 2019, Water and Sanitation for the 21st Century: Health and Microbiological Aspects of Excreta and Wastewater Management (Global Water Pathogen Project).

Next generation sequencing approaches to evaluate water and wastewater quality.

Liqing Zhang, E. Garner, A. Pruden, 2021, Water research.

mobileOG-db: a Manually Curated Database of Protein Families Mediating the Life Cycle of Bacterial Mobile Genetic Elements

Liqing Zhang, A. Pruden, P. Vikesland, 2021, bioRxiv.

Structured Ethical Review for Wastewater-Based Testing

P. Vikesland, K. Goodman, D. Sills, 2023, medRxiv.

Microbiota and Antibiotic Resistome of Lettuce Leaves and Radishes Grown in Soils Receiving Manure-Based Amendments Derived From Antibiotic-Treated Cows

G. Guron, A. Pruden, L. Krometis, 2019, Front. Sustain. Food Syst..

A framework for standardized qPCR-targets and protocols for quantifying antibiotic resistance in surface water, recycled water and wastewater

A. Pruden, V. Harwood, Ishi Keenum, 2022, Critical Reviews in Environmental Science and Technology.

Combined effects of composting and antibiotic administration on cattle manure–borne antibiotic resistance genes

E. Garner, A. Pruden, Ishi Keenum, 2021, Microbiome.