Stephen R. Quake

发表

Methods for reduced cost and lower sample prep volumes for genetic analysis applications

David W. Miller, Mark W. Watson, J. Jenkins, 2015 .

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy

Bruno Agard, Robert Tibshirani, Nima Aghaeepour, 2018, Bioinform..

LOC Out of the Box: Design, engineering and utility of biotic games

Stephen R. Quake, 2011 .

Microfabricated devices for sizing DNA and sorting cells

Axel Scherer, Stephen R. Quake, Hou-Pu Chou, 1998, Photonics West - Biomedical Optics.

Scanning apertureless fluorescence microscope

Pierre Barritault, Stephen R. Quake, Guillaume A. Lessard, 1999, Photonics West - Biomedical Optics.

A Microfluidic Device for Preparing Next Generation DNA Sequencing Libraries and for Automating Other Laboratory Protocols That Require One or More Column Chromatography Steps

Swee Jin Tan, Stephen R. Quake, Huan Phan, 2013, PloS one.

An inexpensive semi-automated sample processing pipeline for cell-free RNA

Stephen R. Quake, Mira N. Moufarrej, S. Quake, 2020, bioRxiv.

Clinical evaluation incorporating a personal genome

Russ B. Altman, Alexander A. Morgan, Rong Chen, 2010 .

Genome-wide Single-Cell Analysis of Recombination Activity and De Novo Mutation Rates in Human Sperm

Stephen R. Quake, H. Christina Fan, H. C. Fan, 2012, Cell.

Circulating Cell-Free DNA Enables Noninvasive Diagnosis of Heart Transplant Rejection

Daniel Bernstein, Stephen R. Quake, Thomas M. Snyder, 2014, Science Translational Medicine.

Molecular biology on a microfluidic chip

Stephen R. Quake, S. Quake, Jong Wook Hong, 2006 .

Numerous uncharacterized and highly divergent microbes which colonize humans are revealed by circulating cell-free DNA

David K. Stevenson, Nathan D. Wolfe, Stephen R. Quake, 2017, Proceedings of the National Academy of Sciences.

Monitoring Pharmacologically Induced Immunosuppression by Immune Repertoire Sequencing to Detect Acute Allograft Rejection in Heart Transplant Patients: A Proof-of-Concept Diagnostic Accuracy Study

Stephen R. Quake, Hannah A. Valantine, Christopher Vollmers, 2015, PLoS medicine.

Genome of a Low-Salinity Ammonia-Oxidizing Archaeon Determined by Single-Cell and Metagenomic Analysis

Paul C. Blainey, Annika C. Mosier, Stephen R. Quake, 2011, PloS one.

Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-Cell RNA Sequencing

Bing Wu, Liqun Luo, Jiefu Li, 2017, Cell.

Partial Genome Assembly for a Candidate Division OP11 Single Cell from an Anoxic Spring (Zodletone Spring, Oklahoma)

Noha H. Youssef, Paul C. Blainey, Mostafa S. Elshahed, 2011, Applied and Environmental Microbiology.

Single Cell Profiling of Circulating Tumor Cells: Transcriptional Heterogeneity and Diversity from Breast Cancer Cell Lines

Gyan Bhanot, R. Fabian Pease, Ranjana H. Advani, 2012, PloS one.

Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells

Spyros Darmanis, Ben A. Barres, Stephen R. Quake, 2017, Neuron.

Noninvasive blood tests for fetal development predict gestational age and preterm delivery

Robert Tibshirani, David K. Stevenson, Stephen R. Quake, 2018, Science.

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

Bin Liu, Yuquan Wei, Yan Zhang, 2017 .

SPECTROGRAPHIC MICROFLUIDIC MEMORY

Demetri Psaltis, Saurabh Vyawahare, David Erickson, 2005 .

Signatures of selection in the human antibody repertoire: Selective sweeps, competing subclones, and neutral drift

Stephen R. Quake, Christopher Vollmers, Cornelia L. Dekker, 2017, Proceedings of the National Academy of Sciences.

Cell lineage tracing using nuclease barcoding

Stephen R. Quake, S. Quake, Stuart K. Kim, 2016, 1606.00786.

Identification of a Colonial Chordate Histocompatibility Gene

Debashis Sahoo, Irving L. Weissman, Ivan K. Dimov, 2013, Science.

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

Charles Gawad, Stephen R. Quake, Iwijn De Vlaminck, 2014, PloS one.

A Microfabricated Rotary Pump

Stephen R. Quake, Hou-Pu Chou, S. Quake, 2001 .

High fidelity hypothermic preservation of primary tissues in organ transplant preservative for single cell transcriptome analysis

Stephen R. Quake, Derek Croote, L. Penland, 2017, BMC Genomics.

The dynamics of partially extended single molecules of DNA

Stephen R. Quake, Steven Chu, Hazen Babcock, 1997, Nature.

Erratum: Lineage structure of the human antibody repertoire in response to influenza vaccination (Science Translational Medicine (2013) 5 (193er8))

Harry B. Greenberg, Jiankui He, Mark M. Davis, 2013 .

A microfluidic oligonucleotide synthesizer

Stephen R. Quake, Thomas M. Snyder, S. Quake, 2010, Nucleic acids research.

Dynamic Chromatin Localization of Sirt6 Shapes Stress- and Aging-Related Transcriptional Networks

Howard Y. Chang, Stephen R. Quake, Kun Qu, 2011, PLoS genetics.

Genetic measurement of memory B-cell recall using antibody repertoire sequencing

Stephen R. Quake, Christopher Vollmers, Cornelia L. Dekker, 2013, Proceedings of the National Academy of Sciences.

High-affinity allergen-specific human antibodies cloned from single IgE B cell transcriptomes

Spyros Darmanis, Kari C. Nadeau, Stephen R. Quake, 2018, Science.

Single molecule measurement of the “speed limit” of DNA polymerase

Stephen R. Quake, S. Quake, J. Schwartz, 2009, Proceedings of the National Academy of Sciences.

Scaling properties of a low-actuation pressure microfluidic valve

Vincent Studer, Michael Ortiz, Anna Pandolfi, 2004 .

Association of reactive oxygen species levels and radioresistance in cancer stem cells

Irving L. Weissman, Michael F. Clarke, Maximilian Diehn, 2009, Nature.

A single-cell transcriptomic atlas characterizes ageing tissues in the mouse

Irving L. Weissman, Róbert Pálovics, Michael F. Clarke, 2020, Nature.

Surgical and molecular characterization of primary and metastatic disease in a neuroendocrine tumor arising in a tailgut cyst

Ash A. Alizadeh, James M. Ford, Stephen R. Quake, 2018, Cold Spring Harbor molecular case studies.

Microfluidic integration on detector arrays for absorption and fluorescence micro-spectrometers

Axel Scherer, Stephen R. Quake, Mark L. Adams, 2003 .

An apertureless near field microscope for fluorescence imaging

Stephen R. Quake, Guillaume A. Lessard, T. J. Yang, 1999 .

Direct Measurement of Hydrodynamic Cross Correlations between Two Particles in an External Potential

Stephen R. Quake, Jens-Christian Meiners, S. Quake, 1999 .

Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding

Irving L. Weissman, Stephen R. Quake, N. Neff, 2011, Nature Biotechnology.

Antigen Identification for Orphan T Cell Receptors Expressed on Tumor-Infiltrating Lymphocytes

Purvesh Khatri, David Baltimore, Mark M. Davis, 2017, Cell.

Sensitivity of Noninvasive Prenatal Detection of Fetal Aneuploidy from Maternal Plasma Using Shotgun Sequencing Is Limited Only by Counting Statistics

Stephen R. Quake, H. Christina Fan, H. C. Fan, 2010, PloS one.

Cells Respond Digitally to Variation in Signal Intensity via Stochastic Activation of NF-κB

Markus W. Covert, Stephen R. Quake, Savaş Tay, 2010 .

Dissecting Biological Dark Matter: Single Cell Genetic Analysis of TM7, a Rare and Uncultivated Microbe from the Human Mouth

Ernest Szeto, Elisabeth M. Bik, Philip Hugenholtz, 2007 .

Digital MDA for enumeration of total nucleic acid contamination

Paul C. Blainey, Stephen R. Quake, S. Quake, 2010, Nucleic acids research.

Polydimethylsiloxane based microfluidic diode

Axel Scherer, M. L. Johnston, Stephen R. Quake, 2005 .

On-chip absorption and fluorescence spectroscopy with polydimethylsiloxane (PDMS) microfluidic flow channels

Axel Scherer, Stephen R. Quake, Mark L. Adams, 2002, 2nd Annual International IEEE-EMBS Special Topic Conference on Microtechnologies in Medicine and Biology. Proceedings (Cat. No.02EX578).

Microfluidic Digital PCR Enables Multigene Analysis of Individual Environmental Bacteria

Stephen R. Quake, Jared R. Leadbetter, S. Quake, 2006, Science.

A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse

Angela Oliveira Pisco, Spyros Darmanis, Stephen R. Quake, 2019, bioRxiv.

Human Acute Myeloid Leukemia Clonal Evolution of Preleukemic Hematopoietic Stem Cells Precedes

Irving L. Weissman, Stephen R. Quake, Thomas M. Snyder, 2012 .

Self-assembling manifolds in single-cell RNA sequencing data

Stephen R. Quake, Yuan Xue, Pengyang Li, 2018, bioRxiv.

A molecular cell atlas of the human lung from single cell RNA sequencing

Irving L. Weissman, Stephen R. Quake, Gerald J. Berry, 2019, Nature.

Static control logic for microfluidic devices using pressure-gain valves

Mark Horowitz, Jessica Melin, Don Stark, 2010 .

Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing

Thomas C. Südhof, Stephen R. Quake, S. Quake, 2014, Proceedings of the National Academy of Sciences.

Migration of cells in a social context

Søren Vedel, Henrik Bruus, Stephen R. Quake, 2012, Proceedings of the National Academy of Sciences.