Joseph Zaia

发表

Multi-task learning sparse group lasso: a method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin

Lei Li, Deborah Chang, Lei Han, 2020, BMC Bioinformatics.

The minimum information required for a glycomics experiment (MIRAGE) project: sample preparation guidelines for reliable reporting of glycomics datasets.

Erdmann Rapp, Kiyoko F. Aoki-Kinoshita, Carsten Kettner, 2016, Glycobiology.

psims - A Declarative Writer for mzML and mzIdentML for Python*

Joseph Zaia, Joshua Klein, 2018, Molecular & Cellular Proteomics.

Relative Retention Time Estimation Improves N-Glycopeptide Identifications By LC-MS/MS.

Joseph Zaia, Joshua Klein, Joshua A. Klein, 2020, Journal of proteome research.

Application of network smoothing to glycan LC‐MS profiling

Luis Carvalho, Joseph Zaia, Joshua Klein, 2018, Bioinform..

GlyTouCan 1.0 – The international glycan structure repository

Kiyoko F. Aoki-Kinoshita, Noriaki Fujita, Toshihide Shikanai, 2015, Nucleic Acids Res..

glypy - An open source glycoinformatics library.

Joseph Zaia, Joshua Klein, Joshua A. Klein, 2019, Journal of proteome research.

Historical overview of glycoanalysis.

Joseph Zaia, Alicia M Bielik, J. Zaia, 2010, Methods in molecular biology.

The Minimum Information Required for a Glycomics Experiment (MIRAGE) Project: Improving the Standards for Reporting Mass-spectrometry-based Glycoanalytic Data

Erdmann Rapp, Carsten Kettner, Daniel Kolarich, 2013, Molecular & Cellular Proteomics.

MIRAGE: The minimum information required for a glycomics experiment

Erdmann Rapp, Kiyoko F. Aoki-Kinoshita, Carsten Kettner, 2014, Glycobiology.

Protocol for analysis of glycoproteomics LC-MS data using GlycReSoft

Joseph Zaia, Joshua A. Klein, 2020 .

Organ-specific Heparan Sulfate Structural Phenotypes*

Joseph Zaia, J. Zaia, Xiaofeng Shi, 2009, Journal of Biological Chemistry.

Tandem mass spectrometry of sulfated heparin-like glycosaminoglycan oligosaccharides.

Catherine E Costello, Joseph Zaia, J. Zaia, 2003, Analytical chemistry.

Size-exclusion chromatography of heparin oligosaccharides at high and low pressure.

Joseph Zaia, J. Zaia, André Ziegler, 2006, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data

Gary Benson, Gordon W. Slysz, Joseph Zaia, 2012, PloS one.

Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides

Cheng Lin, Catherine E Costello, Joshua A Klein, 2018, Journal of The American Society for Mass Spectrometry.

Top-down approach for the direct characterization of low molecular weight heparins using LC-FT-MS.

Robert J Linhardt, Joseph Zaia, Fuming Zhang, 2012, Analytical chemistry.

A chip‐based amide‐HILIC LC/MS platform for glycosaminoglycan glycomics profiling

Catherine E Costello, Joseph Zaia, Christine A. Miller, 2009, Proteomics.

Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012*

Haixu Tang, Daniel Kolarich, Wolfgang Jabs, 2013, Molecular & Cellular Proteomics.

Extended N-Sulfated Domains Reside at the Nonreducing End of Heparan Sulfate Chains*

Joseph Zaia, J. Zaia, Xiaofeng Shi, 2010, The Journal of Biological Chemistry.

NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods*

Erdmann Rapp, David J. Harvey, Stephen E. Stein, 2019, Molecular & Cellular Proteomics.

Addresses for Correspondence

Xiaofeng Shi, Yang Mao, Chun Shao, 2010 .

Mass spectral profiling of glycosaminoglycans from histological tissue surfaces.

Joseph Zaia, J. Zaia, Xiaofeng Shi, 2013, Analytical chemistry.

A review of methods for interpretation of glycopeptide tandem mass spectral data

Joseph Zaia, Joshua Klein, Joshua A. Klein, 2015, Glycoconjugate Journal.

Construction of a Database of Collision Cross Section Values for Glycopeptides, Glycans, and Peptides Determined by IM-MS.

Catherine E Costello, Joseph Zaia, J. Zaia, 2017, Analytical chemistry.

Towards Automatic and Comprehensive Glycan Characterization by On-line PGC-LC-EED MS/MS.

Cheng Lin, Pengyu Hong, Yu Bai, 2019, Analytical chemistry.

Microfluidic Capillary Electrophoresis-Mass Spectrometry for Analysis of Monosaccharides, Oligosaccharides, and Glycopeptides.

Catherine E Costello, Joshua A Klein, Joseph Zaia, 2017, Analytical chemistry.

Deep Sequencing of Complex Proteoglycans: A Novel Strategy for High Coverage and Site-specific Identification of Glycosaminoglycan-linked Peptides *

Joshua A Klein, Joseph Zaia, Joshua A. Klein, 2018, Molecular & Cellular Proteomics.

Mass spectrometry and glycomics.

Joseph Zaia, J. Zaia, 2010, Omics : a journal of integrative biology.

Mesenchymal Stem Cell Surface Antigen SB‐10 Corresponds to Activated Leukocyte Cell Adhesion Molecule and Is Involved in Osteogenic Differentiation

Joseph Zaia, J. Zaia, F. Barry, 1998, Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research.

Tandem mass spectrometric strategies for determination of sulfation positions and uronic acid epimerization in chondroitin sulfate oligosaccharides

Catherine E. Costello, Joseph Zaia, J. Zaia, 2003, Journal of the American Society for Mass Spectrometry.

Why Glycosylation Matters in Building a Better Flu Vaccine*

Joseph Zaia, J. Zaia, Deborah Chang, 2019, Molecular & Cellular Proteomics.

Improved hydrophilic interaction chromatography LC/MS of heparinoids using a chip with postcolumn makeup flow.

Catherine E Costello, Joseph Zaia, J. Zaia, 2010, Analytical chemistry.

Glycoform quantification of chondroitin/dermatan sulfate using a liquid chromatography-tandem mass spectrometry platform.

Catherine E Costello, Joseph Zaia, J. Zaia, 2006, Biochemistry.

The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data

Erdmann Rapp, Kiyoko F. Aoki-Kinoshita, Carsten Kettner, 2016, Glycobiology.

Mass spectrometry and the emerging field of glycomics.

Joseph Zaia, J. Zaia, 2008, Chemistry & biology.

Improved liquid chromatography-MS/MS of heparan sulfate oligosaccharides via chip-based pulsed makeup flow.

Joseph Zaia, Kevin Killeen, N. Leymarie, 2011, Analytical chemistry.

Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions

Robert J Woods, Joshua A Klein, Joseph Zaia, 2016, Molecular & Cellular Proteomics.

Complete Molecular Weight Profiling of Low-Molecular Weight Heparins Using Size Exclusion Chromatography-Ion Suppressor-High-Resolution Mass Spectrometry.

Joseph Zaia, Joshua Klein, Rosa Viner, 2016, Analytical chemistry.

Algorithms and design strategies towards automated glycoproteomics analysis.

Joseph Zaia, J. Zaia, Han Hu, 2017, Mass spectrometry reviews.

Tags for the stable isotopic labeling of carbohydrates and quantitative analysis by mass spectrometry.

Joseph Zaia, J. Zaia, M. J. Bowman, 2007, Analytical chemistry.

Use of an informed search space maximizes confidence of site-specific assignment of glycoprotein glycosylation

Joseph Zaia, Joshua A. Klein, J. Zaia, 2016, Analytical and Bioanalytical Chemistry.