V. Bojilova

Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing

Richard A. Moore, Khanh N. Dinh, S. Tavaré, 2019, Cell.

Immune and malignant cell phenotypes of ovarian cancer are determined by distinct mutational processes

Marc J. Williams, Allen W. Zhang, A. Viale, 2021, bioRxiv.

Ovarian cancer mutational processes drive site-specific immune evasion

Allen W. Zhang, A. Viale, Nicole Rusk, 2022, Nature.

Single-cell genomic variation induced by mutational processes in cancer

Allen W. Zhang, Nicole Rusk, A. McPherson, 2022, Nature.

Evolutionary tracking of cancer haplotypes at single-cell resolution

Marc J. Williams, Nicole Rusk, S. Shah, 2021, bioRxiv.

The impact of mutational processes on structural genomic plasticity in cancer cells

Marc J. Williams, Richard A. Moore, Allen W. Zhang, 2021, bioRxiv.

GeneVector: Identification of transcriptional programs using dense vector representations defined by mutual information

Nicole Rusk, A. McPherson, N. Ceglia, 2023, bioRxiv.

Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires

Richard A. Moore, C. Steidl, M. Marra, 2018, bioRxiv.

Immune profiling after allogeneic hematopoietic cell transplantation in pediatric acute myeloid leukemia

A. McPherson, O. Abdel-Wahab, B. Greenbaum, 2023, Blood advances.

Identification of transcriptional programs using dense vector representations defined by mutual information with GeneVector

Nicole Rusk, A. McPherson, B. Greenbaum, 2023, Nature Communications.

Determinants of Survival with Combined HER2 and PD-1 Blockade in Metastatic Esophagogastric Cancer

N. Schultz, D. Solit, U. Bhanot, 2023, Clinical cancer research : an official journal of the American Association for Cancer Research.