Sébastien Ourselin

发表

Detail-Preserving PET Reconstruction with Sparse Image Representation and Anatomical Priors

Jieqing Jiao, Pawel Markiewicz, Ninon Burgos, 2015, IPMI.

VTrails: Inferring Vessels with Geodesic Connectivity Trees pdf

Sébastien Ourselin, Stefano Moriconi, Maria A. Zuluaga, 2017, IPMI.

Registration-based propagation for whole heart segmentation from compounded 3D echocardiography

YingLiang Ma, Sébastien Ourselin, Xiahai Zhuang, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Automatic Initialization of 3D Deformable Models for Cartilage Segmentation

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2005, Digital Image Computing: Techniques and Applications (DICTA'05).

A Nonlinear Biomechanical Model Based Registration Method for Aligning Prone and Supine MR Breast Images

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2014, IEEE Transactions on Medical Imaging.

Attenuation Correction Synthesis for Hybrid PET-MR Scanners

Ninon Burgos, David Atkinson, Brian F. Hutton, 2013, MICCAI.

Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images

Sébastien Ourselin, Ludwig M. Auer, Nicholas Ayache, 2000, MICCAI.

Issues with threshold masking in voxel-based morphometry of atrophied brains

Sébastien Ourselin, Nick C. Fox, Derek L. G. Hill, 2009, NeuroImage.

Texture coordinate generation of colonic surface meshes for surgical simulation

Sébastien Ourselin, Oscar Acosta, Josh Passenger, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

MRI to X-ray mammography registration using a volume-preserving affine transformation

Nico Karssemeijer, Sébastien Ourselin, David J. Hawkes, 2012, Medical Image Anal..

Automatic Brain Tumor Segmentation using Convolutional Neural Networks with Test-Time Augmentation pdf

Sébastien Ourselin, Guotai Wang, Wenqi Li, 2018, BrainLes@MICCAI.

Strengths and Pitfalls of Whole-Heart Atlas-Based Segmentation in Congenital Heart Disease Patients

Sébastien Ourselin, Maria A. Zuluaga, Silvia Schievano, 2016, RAMBO+HVSMR@MICCAI.

Simulating Neurodegeneration through Longitudinal Population Analysis of Structural and Diffusion Weighted MRI Data

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2014, MICCAI.

Maximum-likelihood estimation of emission and attenuation images in 3D PET from multiple energy window measurements

Brian F. Hutton, Sébastien Ourselin, David Atkinson, 2018, 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference Proceedings (NSS/MIC).

Geodesic Shape-Based Averaging

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2012, MICCAI.

Probabilistic Graphical Model of SPECT/MRI

Brian F. Hutton, Simon R. Arridge, Sébastien Ourselin, 2011, MLMI.

Editorial

Sébastien Ourselin, Nicholas Ayache, N. Ayache, 2008, Medical Image Anal..

Database-Based Estimation of Liver Deformation under Pneumoperitoneum for Surgical Image-Guidance and Simulation

Sébastien Ourselin, Zeike A. Taylor, Marc Modat, 2015, MICCAI.

High-Speed Nonlinear Finite Element Analysis for Surgical Simulation Using Graphics Processing Units

Sébastien Ourselin, Zeike A. Taylor, Mario Cheng, 2008, IEEE Transactions on Medical Imaging.

Prefrontal Cortical Folding of the Preterm Brain: A Longitudinal Analysis of Preterm-Born Neonates

Sébastien Ourselin, Andrew Melbourne, Giles S. Kendall, 2014, STIA.

Fast Deformation Simulation of Breasts Using GPU-Based Dynamic Explicit Finite Element Method

Sébastien Ourselin, Zeike A. Taylor, David J. Hawkes, 2010, Digital Mammography / IWDM.

Multi-scale Analysis of Imaging Features and Its Use in the Study of COPD Exacerbation Susceptible Phenotypes

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2014, MICCAI.

Classification of Alzheimer's disease patients and controls with Gaussian processes

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

Manifold learning for atlas selection in multi-atlas-based segmentation of hippocampus

Sébastien Ourselin, Marc Modat, Kelvin K. Leung, 2012, Medical Imaging.

A Registration-Based Propagation Framework for Automatic Whole Heart Segmentation of Cardiac MRI

Sébastien Ourselin, Kawal S. Rhode, Xiahai Zhuang, 2010, IEEE Transactions on Medical Imaging.

Multi-atlas synthesis for computer assisted diagnosis: Application to cardiovascular diseases

Ninon Burgos, Sébastien Ourselin, Maria A. Zuluaga, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

A quantitative assessment of approaches to mesh generation for surgical simulation

Sébastien Ourselin, Simon K. Warfield, Andriy Fedorov, 2008, Engineering with Computers.

A Haptic Interface with Motor/Brake System for Colonoscopy Simulation

Sébastien Ourselin, Hannes Bleuler, Ulrich Spaelter, 2008, 2008 Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems.

3D Statistical Shape Models to Embed Spatial Relationship Information

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2005, CVBIA.

Haptic Guidance Based on All-Optical Ultrasound Distance Sensing for Safer Minimally Invasive Fetal Surgery

Adrien E. Desjardins, Dominiek Reynaerts, Sébastien Ourselin, 2018, J. Medical Robotics Res..

A registration and atlas propagation based framework for automatic whole heart segmentation of CT volumes

Sébastien Ourselin, Xiahai Zhuang, Qiang Li, 2013, Medical Imaging.

Cardiac Cycle Estimation for BOLD-fMRI

Sébastien Ourselin, Andrew Melbourne, David L. Thomas, 2018, MICCAI.

Gaussian processes with optimal kernel construction for neuro-degenerative clinical onset prediction

Sébastien Ourselin, Marc Modat, Tammie L. Benzinger, 2018, Medical Imaging.

Nonlinear Elastic Spline Registration: Evaluation with Longitudinal Huntington's Disease Data

Sébastien Ourselin, Zeike A. Taylor, Marc Modat, 2010, WBIR.

Using marker-based deformable models for deriving anatomical models from medical image databases

Sébastien Ourselin, Rongxin Li, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

Progressive Update Approach to Real-time Cutting of Finite Element Models in Surgical Simulation

Sébastien Ourselin, Dan C. Popescu, Bryan Lee, 2007, MMVR.

An Oblique Approach to Prediction of Conversion to Alzheimer's Disease with Multikernel Gaussian Processes

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2014, MLINI@NIPS.

FILTERING AND RESTORATION OF STRUCTURES IN 3D ULTRASOUND IMAGES

Sébastien Ourselin, Aaron Fenster, Oscar Acosta, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Improved Neuronavigation through Integration of Intraoperative Anatomical and Diffusion Images in an Interventional MRI Suite

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2011, IPCAI.

Multi-atlas Propagation Whole Heart Segmentation from MRI and CTA Using a Local Normalised Correlation Coefficient Criterion

Sébastien Ourselin, Maria A. Zuluaga, Marc Modat, 2013, FIMH.

Computational Modelling of Pathogenic Protein Behaviour-Governing Mechanisms in the Brain

Sébastien Ourselin, Marc Modat, Adeel Razi, 2018, MICCAI.

Practical PET respiratory motion correction in clinical simultaneous PET/MR

Brian F. Hutton, Sébastien Ourselin, Simon R. Arridge, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

Bilateral Weighted Adaptive Local Similarity Measure for Registration in Neurosurgery

Sébastien Ourselin, Marc Modat, Danail Stoyanov, 2016, MICCAI.

4-D PET joint image reconstruction/non-rigid motion estimation with limited MRI prior information

Jieqing Jiao, Sébastien Ourselin, Kris Thielemans, 2014, EJNMMI Physics.

Unifying Encoding of Spatial Information in Mutual Information for Nonrigid Registration

Sébastien Ourselin, Xiahai Zhuang, David J. Hawkes, 2009, IPMI.

A Probabilistic Model Combining Deep Learning and Multi-atlas Segmentation for Semi-automated Labelling of Histology

Sébastien Ourselin, Juan Eugenio Iglesias, Alessia Atzeni, 2018, MICCAI.

Multi-atlas based pathological stratification of D-TGA congenital heart disease

Sébastien Ourselin, Maria A. Zuluaga, Manuel Jorge Cardoso, 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI).

Direct Parametric Reconstruction With Joint Motion Estimation/Correction for Dynamic Brain PET Data

Jieqing Jiao, Pawel Markiewicz, Ninon Burgos, 2017, IEEE Trans. Medical Imaging.

MR Image Segmentation Using Phase Information and a Novel Multiscale Scheme

Sébastien Ourselin, Jurgen Fripp, Pierrick Bourgeat, 2006, MICCAI.

A Framework Combining Multi-sequence MRI for Fully Automated Quantitative Analysis of Cardiac Global And Regional Functions

Sébastien Ourselin, Daniel Rueckert, Haiyan Wang, 2011, FIMH.

Learning Imaging Biomarker Trajectories from Noisy Alzheimer's Disease Data Using a Bayesian Multilevel Model

Sébastien Ourselin, Nick C. Fox, Daniel C. Alexander, 2014, BAMBI.

Model-Guided Directional Minimal Path for Fully Automatic Extraction of Coronary Centerlines from Cardiac CTA

Liu Liu, Sébastien Ourselin, Daniel Rueckert, 2013, MICCAI.

A Comprehensive Cardiac Motion Estimation Framework Using Both Untagged and 3-D Tagged MR Images Based on Nonrigid Registration

Sébastien Ourselin, Kawal S. Rhode, Daniel Rueckert, 2012, IEEE Transactions on Medical Imaging.

PET Reconstruction With an Anatomical MRI Prior Using Parallel Level Sets

Pawel Markiewicz, David Atkinson, Brian F. Hutton, 2016, IEEE Transactions on Medical Imaging.

Real-Time Nonlinear Finite Element Analysis for Surgical Simulation Using Graphics Processing Units

Sébastien Ourselin, Zeike A. Taylor, Mario Cheng, 2007, MICCAI.

GIFT-Cloud: A data sharing and collaboration platform for medical imaging research

Sébastien Ourselin, Erwin Bellon, Jan Deprest, 2017, Comput. Methods Programs Biomed..

Corner-Based Geometric Calibration of Multi-focus Plenoptic Cameras

Sébastien Ourselin, Christos Bergeles, François Chadebecq, 2017, 2017 IEEE International Conference on Computer Vision (ICCV).

A Riemannian Framework for Intrinsic Comparison of Closed Genus-Zero Shapes

Paul M. Thompson, Sébastien Ourselin, P. Thomas Fletcher, 2015, IPMI.

Deforming a High-Resolution Mesh in Real-Time by Mapping onto a Low-Resolution Physical Model

Sébastien Ourselin, Olivier Salvado, Olivier Comas, 2008, ISBMS.

Markov random field and Gaussian mixture for segmented MRI-based partial volume correction in PET

Sébastien Ourselin, Stefano Pedemonte, Simon Arridge, 2012, Physics in medicine and biology.

Cortical Folding Analysis on Patients with Alzheimer's Disease and Mild Cognitive Impairment

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2012, MICCAI.

Using Manifold Learning for Atlas Selection in Multi-Atlas Segmentation

Sébastien Ourselin, M. Jorge Cardoso, Marc Modat, 2013, PloS one.

CT synthesis in the head & neck region for PET/MR attenuation correction: an iterative multi-atlas approach

Ninon Burgos, David Atkinson, Sébastien Ourselin, 2015, EJNMMI Physics.

Coronary centerline extraction based on ostium detection and model-guided directional minimal path

Liu Liu, Sébastien Ourselin, Daniel Rueckert, 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI).

Nonrigid registration with differential bias correction using normalised mutual information

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Modelling Anisotropic Viscoelasticity for Real-Time Soft Tissue Simulation

David Atkinson, Sébastien Ourselin, Zeike A. Taylor, 2008, MICCAI.

Whole Heart Segmentation of Cardiac MRI Using Multiple Path Propagation Strategy

Sébastien Ourselin, Kawal S. Rhode, Xiahai Zhuang, 2010, MICCAI.

Biomechanically guided prone-to-supine image registration of breast MRI using an estimated reference state

Sébastien Ourselin, Cristian Lorenz, Sven Kabus, 2013, 2013 IEEE 10th International Symposium on Biomedical Imaging.

AUTOMATIC SEGMENTATION OF THE BONES FROM MR IMAGES OF THE KNEE

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics

Sébastien Ourselin, Zeike A. Taylor, Marc Modat, 2014, International Journal of Computer Assisted Radiology and Surgery.

Spline Based Inhomogeneity Correction for 11C-PIB PET Segmentation Using Expectation Maximization

Sébastien Ourselin, Pierrick Bourgeat, Christopher Rowe, 2007, MICCAI.

Automatic MRI Atlas-Based External Beam Radiation Therapy Treatment Planning for Prostate Cancer

Sébastien Ourselin, Olivier Salvado, Jurgen Fripp, 2010, Prostate Cancer Imaging.

On modelling of anisotropic viscoelasticity for soft tissue simulation: Numerical solution and GPU execution

David Atkinson, Sébastien Ourselin, Zeike A. Taylor, 2009, Medical Image Anal..

Subject-specific Models for the Analysis of Pathological FDG PET Data

Ninon Burgos, David Atkinson, Brian F. Hutton, 2015, MICCAI.

Requirements Based Design and End-to-End Dynamic Modeling of a Robotic Tool for Vitreoretinal Surgery

Sébastien Ourselin, Christos Bergeles, Anestis Mablekos-Alexiou, 2018, 2018 IEEE International Conference on Robotics and Automation (ICRA).

On the Extraction of Topologically Correct Thickness Measurements Using Khalimsky's Cubic Complex

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2011, IPMI.

Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics

Sébastien Ourselin, Zeike A. Taylor, David J. Hawkes, 2015, International Journal of Computer Assisted Radiology and Surgery.

Registration of Prone and Supine CT Colonography Datasets with Differing Endoluminal Distension

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2013, Abdominal Imaging.

X-ray Mammography - MRI Registration Using a Volume-Preserving Affine Transformation and an EM-MRF for Breast Tissue Classification

Sébastien Ourselin, David J. Hawkes, John H. Hipwell, 2010, Digital Mammography / IWDM.

Attenuation correction synthesis for hybrid PET-MR scanners: validation for brain study applications

Ninon Burgos, David Atkinson, Sébastien Ourselin, 2014, EJNMMI Physics.

A log-Euclidean and total variation based variational framework for computational sonography

Sébastien Ourselin, David J. Hawkes, Jan Deprest, 2018, Medical Imaging.

Automatic segmentation of the bone and extraction of the bone–cartilage interface from magnetic resonance images of the knee

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2007, Physics in medicine and biology.

Abdominal Palpation Haptic Device for Colonoscopy Simulation Using Pneumatic Control

Sébastien Ourselin, Olivier Salvado, Marcus Watson, 2012, IEEE Transactions on Haptics.

A Modular Simulation Framework for Colonoscopy using a New Haptic Device

Sébastien Ourselin, Hannes Bleuler, Josh Passenger, 2008, MMVR.

A System for Biopsy Site Re-targeting with Uncertainty in Gastroenterology and Oropharyngeal Examinations

Sébastien Ourselin, David J. Hawkes, Laurence B. Lovat, 2010, MICCAI.

GAS: A genetic atlas selection strategy in multi‐atlas segmentation framework

Sébastien Ourselin, M. Jorge Cardoso, Marc Modat, 2019, Medical Image Anal..

Longitudinal Analysis of the Preterm Cortex Using Multi-modal Spectral Matching

Sébastien Ourselin, Andrew Melbourne, Giles S. Kendall, 2016, MICCAI.

Electromagnetic tracking in image‐guided laparoscopic surgery: Comparison with optical tracking and feasibility study of a combined laparoscope and laparoscopic ultrasound system

Sébastien Ourselin, David J. Hawkes, Ester Bonmati, 2018, Medical physics.

Template-Based Multimodal Joint Generative Model of Brain Data

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2015, IPMI.

Robust atrophy rate measurement in Alzheimer's disease using multi-site serial MRI: Tissue-specific intensity normalization and parameter selection

Michael Weiner, Sébastien Ourselin, Clifford R. Jack, 2010, NeuroImage.

A symmetric block-matching framework for global registration

Sébastien Ourselin, Marc Modat, John S. Duncan, 2014, Medical Imaging.

Biopsy Site Re-localisation Based on the Computation of Epipolar Lines from Two Previous Endoscopic Images

Sébastien Ourselin, David J. Hawkes, Laurence B. Lovat, 2009, MICCAI.

Robust CT Synthesis for Radiotherapy Planning: Application to the Head and Neck Region

Ninon Burgos, David Atkinson, Brian F. Hutton, 2015, MICCAI.

Improving MRI Brain Image Classification with Anatomical Regional Kernels

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2015, MLMMI@ICML.

NiftyPET: a High-throughput Software Platform for High Quantitative Accuracy and Precision PET Imaging and Analysis

David Atkinson, Brian F. Hutton, Simon R. Arridge, 2017, Neuroinformatics.

MR image segmentation of the knee bone using phase information

Sébastien Ourselin, Jurgen Fripp, Pierrick Bourgeat, 2007, Medical Image Anal..

Computation of the mid-sagittal plane in 3-D brain images

Sébastien Ourselin, Nicholas Ayache, Sylvain Prima, 2002, IEEE Transactions on Medical Imaging.

Efficient Determination of the Uncertainty for the Optimization of SPECT System Design: A Subsampled Fisher Information Matrix

Brian F. Hutton, Simon R. Arridge, Sébastien Ourselin, 2014, IEEE Transactions on Medical Imaging.

Locally rigid, vessel-based registration for laparoscopic liver surgery

Sébastien Ourselin, David J. Hawkes, Dean C. Barratt, 2015, International Journal of Computer Assisted Radiology and Surgery.

Distinct profiles of brain atrophy in frontotemporal lobar degeneration caused by progranulin and tau mutations☆

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2010, NeuroImage.

Quantitative Airway Analysis in Longitudinal Studies Using Groupwise Registration and 4D Optimal Surfaces

Sébastien Ourselin, Marc Modat, Marleen de Bruijne, 2013, MICCAI.

Bilayered anatomically constrained split-and-merge expectation maximisation algorithm (BiASM) for brain segmentation

Sébastien Ourselin, Manuel Jorge Cardoso, Carole H. Sudre, 2014, Medical Imaging.

Joint Parametric Reconstruction and Motion Correction Framework for Dynamic PET Data

Jieqing Jiao, Pawel Markiewicz, Ninon Burgos, 2014, MICCAI.

Angular rebinning for geometry independent SPECT reconstruction

Simon R. Arridge, Sébastien Ourselin, Stefano Pedemonte, 2013 .

APPLICATION-DRIVEN QUANTITATIVE ASSESSMENT OF APPROACHES TO MESH GENERATION

Sébastien Ourselin, Simon K. Warfield, Andriy Fedorov, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Free-Form Deformations Using Adaptive Control Point Status for Whole Heart MR Segmentation

Sébastien Ourselin, Kawal S. Rhode, Xiahai Zhuang, 2009, FIMH.

Neural Activation Estimation in Brain Networks During Task and Rest Using BOLD-fMRI

Sébastien Ourselin, Andrew Melbourne, Michael Hütel, 2018, MICCAI.

A Machine Learning Approach to Predict Instrument Bending in Stereotactic Neurosurgery

Sébastien Ourselin, Sjoerd B. Vos, John S. Duncan, 2018, MICCAI.

A Registration Approach to Endoscopic Laser Speckle Contrast Imaging for Intrauterine Visualisation of Placental Vessels

Adrien E. Desjardins, Sébastien Ourselin, Efthymios Maneas, 2015, MICCAI.

Atlas based automated segmentation of the quadratus lumborum muscle using non-rigid registration on magnetic resonance images of the thoracolumbar region

Stuart Crozier, Sébastien Ourselin, Olivier Salvado, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Slic-Seg: Slice-by-Slice Segmentation Propagation of the Placenta in Fetal MRI Using One-Plane Scribbles and Online Learning

Sébastien Ourselin, Maria A. Zuluaga, Jan Deprest, 2015, MICCAI.

An Event-Based Disease Progression Model and Its Application to Familial Alzheimer's Disease

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2011, IPMI.

Cortical thickness measurement from magnetic resonance images using partial volume estimation

Sébastien Ourselin, Maria A. Zuluaga, Olivier Salvado, 2008, SPIE Medical Imaging.

Appearance modeling of 11C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairment and healthy aging

Sébastien Ourselin, Olivier Salvado, Marc Modat, 2008, NeuroImage.

A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2006, SPIE Medical Imaging.

A Visual Dataflow Language for Image Segmentation and Registration

Sébastien Ourselin, Rongxin Li, John M. Potter, 2007, ICSOFT/ENASE.

Improved Maximum a Posteriori Cortical Segmentation by Iterative Relaxation of Priors

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2009, MICCAI.

Towards Modelling Multi-Arm Robots: Eccentric Arrangement of Concentric Tubes

Sébastien Ourselin, Mohsen Khadem, Christos Bergeles, 2018, 2018 7th IEEE International Conference on Biomedical Robotics and Biomechatronics (Biorob).

Accurate Curvilinear Modeling for Precise Measurements of Tubular Structures

Sébastien Ourselin, Rongxin Li, S. Ourselin, 2003, DICTA.

2D-3D Pose Tracking of Rigid Instruments in Minimally Invasive Surgery

Sébastien Ourselin, David J. Hawkes, Danail Stoyanov, 2014, IPCAI.

Anatomy-driven multiple trajectory planning (ADMTP) of intracranial electrodes for epilepsy surgery

Sébastien Ourselin, Sjoerd B. Vos, John S. Duncan, 2017, International Journal of Computer Assisted Radiology and Surgery.

Explicit contact modeling for surgical computer guidance and simulation

Sébastien Ourselin, Zeike A. Taylor, David J. Hawkes, 2012, Medical Imaging.

On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task pdf

Sébastien Ourselin, M. Jorge Cardoso, Guotai Wang, 2017, IPMI.

Slic-Seg: A minimally interactive segmentation of the placenta from sparse and motion-corrupted fetal MRI in multiple views

Sébastien Ourselin, Maria A. Zuluaga, Jan Deprest, 2016, Medical Image Anal..

Multi-STEPS: Multi-label similarity and truth estimation for propagated segmentations

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2012, 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis.

Radial Structure in the Preterm Cortex; Persistence of the Preterm Phenotype at Term Equivalent Age?

Sébastien Ourselin, Andrew Melbourne, Giles S. Kendall, 2012, MICCAI.

Texture-based segmentation of the knee bones in MRI using phase information

Sébastien Ourselin, Pierrick Bourgeat, Saadallah Ramadan, 2006, 3rd IEEE International Symposium on Biomedical Imaging: Nano to Macro, 2006..

Spatial Information Encoded Mutual Information for Nonrigid Registration

Sébastien Ourselin, Xiahai Zhuang, David J. Hawkes, 2010, WBIR.

Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2007, MICCAI.

Modelling Non-stationary and Non-separable Spatio-Temporal Changes in Neurodegeneration via Gaussian Process Convolution

Sébastien Ourselin, Daniel C. Alexander, Marco Lorenzi, 2015, MLMMI@ICML.

Automated generation of curved planar reformations from MR images of the spine.

Bostjan Likar, Franjo Pernus, Sébastien Ourselin, 2007, Physics in medicine and biology.

A Nonrigid Registration Framework Using Spatially Encoded Mutual Information and Free-Form Deformations

Simon R. Arridge, Sébastien Ourselin, Xiahai Zhuang, 2011, IEEE Transactions on Medical Imaging.

Multi-contrast attenuation map synthesis for PET/MR scanners: assessment on FDG and Florbetapir PET tracers

Ninon Burgos, David Atkinson, Brian F. Hutton, 2015, European Journal of Nuclear Medicine and Molecular Imaging.

Body wall force sensor for simulated minimally invasive surgery: Application to fetal surgery

Dominiek Reynaerts, Sébastien Ourselin, Kathleen Denis, 2017, 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS).

A Bayesian Approach for Spatially Adaptive Regularisation in Non-rigid Registration

Mark W. Woolrich, Sébastien Ourselin, Marc Modat, 2013, MICCAI.

Automatic Cardiac Motion Tracking Using Both Untagged and 3D Tagged MR Images

Sébastien Ourselin, Daniel Rueckert, Haiyan Wang, 2011, STACOM.

Classification of Alzheimer's disease patients with hippocampal shape wrapper-based feature selection and support vector machine

Sébastien Ourselin, Gerard R. Ridgway, Kelvin K. Leung, 2012, Medical Imaging.

Towards computer-assisted TTTS: Laser ablation detection for workflow segmentation from fetoscopic video

Sébastien Ourselin, Danail Stoyanov, Jan Deprest, 2018, International Journal of Computer Assisted Radiology and Surgery.

Generalised boundary shift integral for longitudinal assessment of spinal cord atrophy

Sébastien Ourselin, Ferran Prados, Manuel Jorge Cardoso, 2019, NeuroImage.

Automated cross-sectional and longitudinal hippocampal volume measurement in mild cognitive impairment and Alzheimer's disease

Norbert Schuff, Sébastien Ourselin, Nick C. Fox, 2010, NeuroImage.

Extended boundary shift integral

Juha Koikkalainen, Jyrki Lötjönen, Sébastien Ourselin, 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI).

Medical-grade Sterilizable Target for Fluid-immersed Fetoscope Optical Distortion Calibration

Sébastien Ourselin, Danail Stoyanov, Tom Vercauteren, 2017, Journal of visualized experiments : JoVE.

Imaging biomarkers for the diagnosis of Prion disease

Sébastien Ourselin, M. Jorge Cardoso, Marc Modat, 2018, Medical Imaging.

Joint PET-MR respiratory motion models for clinical PET motion correction

David Atkinson, Sébastien Ourselin, Kris Thielemans, 2016, Physics in medicine and biology.

Automated Template-Based Hippocampal Segmentations from MRI: The Effects of 1.5T or 3T Field Strength on Accuracy

Sébastien Ourselin, Nick C. Fox, Ian B. Malone, 2014, Neuroinformatics.

Parametric non-rigid registration using a stationary velocity field

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2012, 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis.

Short Acquisition Time PET Quantification Using MRI-Based Pharmacokinetic Parameter Synthesis

Jieqing Jiao, Pawel Markiewicz, Ninon Burgos, 2017, MICCAI.

AdaPT: An adaptive preterm segmentation algorithm for neonatal brain MRI

Sébastien Ourselin, Marc Modat, Andrew Melbourne, 2013, NeuroImage.

Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2010, IEEE Transactions on Medical Imaging.

Pyramidal flux in an anisotropic diffusion scheme for enhancing structures in 3D images

Sébastien Ourselin, Olivier Salvado, Aaron Fenster, 2008, SPIE Medical Imaging.

Cross-sectional analysis using voxel or surface based cortical thickness methods: A comparison study

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Point-Spread-Function-Aware Slice-to-Volume Registration: Application to Upper Abdominal MRI Super-Resolution

David Atkinson, Sébastien Ourselin, Tom Vercauteren, 2016, RAMBO+HVSMR@MICCAI.

Comparison of In Vivo and Ex Vivo MRI for the Detection of Structural Abnormalities in a Mouse Model of Tauopathy

Sébastien Ourselin, Emily C. Collins, M. Jorge Cardoso, 2017, Front. Neuroinform..

A multi-centre evaluation of eleven clinically feasible brain PET/MRI attenuation correction techniques using a large cohort of patients

Ninon Burgos, Brian F. Hutton, Sébastien Ourselin, 2016, NeuroImage.

From computer-assisted intervention research to clinical impact: The need for a holistic approach

Sébastien Ourselin, Tom Vercauteren, Mark Emberton, 2016, Medical Image Anal..

A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data

Sébastien Ourselin, Nicholas Ayache, Grégoire Malandain, 2007, NeuroImage.

Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections

Sébastien Ourselin, Nicholas Ayache, Grégoire Malandain, 2002, Proceedings IEEE International Symposium on Biomedical Imaging.

Topology modification for surgical simulation using precomputed finite element models based on linear elasticity.

Sébastien Ourselin, Bryan Lee, Dan C Popescu, 2010, Progress in biophysics and molecular biology.

Global image registration using a symmetric block-matching approach

Sébastien Ourselin, Marc Modat, Pankaj Daga, 2014, Journal of medical imaging.

Multi-modal pharmacokinetic modelling for DCE-MRI: using diffusion weighted imaging to constrain the local arterial input function

David Atkinson, Sébastien Ourselin, Marc Modat, 2014, Medical Imaging.

Guest editorial of the IJCARS MICCAI 2016 special issue

Leo Joskowicz, Sébastien Ourselin, William Wells, 2017, International Journal of Computer Assisted Radiology and Surgery.

Integrating structural and diffusion MR information for optic radiation localisation in focal epilepsy patients

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

A Reduced Order Explicit Dynamic Finite Element Algorithm for Surgical Simulation

Stuart Crozier, Sébastien Ourselin, Zeike A. Taylor, 2011, IEEE Transactions on Medical Imaging.

Joint Segmentation and CT Synthesis for MRI-only Radiotherapy Treatment Planning

Ninon Burgos, Sébastien Ourselin, M. Jorge Cardoso, 2016, MICCAI.

Susceptibility artefact correction using dynamic graph cuts: Application to neurosurgery

Sébastien Ourselin, Marc Modat, John S. Duncan, 2014, Medical Image Anal..

Simulated Field Maps: Toward Improved Susceptibility Artefact Correction in Interventional MRI

Ninon Burgos, Sébastien Ourselin, Danail Stoyanov, 2014, IPCAI.

Simulated field maps for susceptibility artefact correction in interventional MRI

Ninon Burgos, Sébastien Ourselin, Danail Stoyanov, 2015, International Journal of Computer Assisted Radiology and Surgery.

Automatic segmentation of 4D cardiac MR images for extraction of ventricular chambers using a spatio-temporal approach

Sébastien Ourselin, Maria A. Zuluaga, Eduardo Romero, 2016, SPIE Medical Imaging.

Large-Scale Mammography CAD with Deformable Conv-Nets

Sébastien Ourselin, Juan Eugenio Iglesias, Zbigniew Wojna, 2018, RAMBO+BIA+TIA@MICCAI.

Forward-backward splitting in deformable image registration: A demons approach

Sébastien Ourselin, Marc Modat, Tom Vercauteren, 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

The estimation of patient-specific cardiac diastolic functions from clinical measurements

Sébastien Ourselin, Daniel Rueckert, Pablo Lamata, 2012, Medical Image Anal..

Sébastien Ourselin, Danail Stoyanov, Francisco Vasconcelos, 2016, ECCV.

Motion modelling and motion compensated reconstruction of tumours in cone-beam computed tomography

Sébastien Ourselin, David J. Hawkes, James Martin, 2012, 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis.

Boosted Training of Convolutional Neural Networks for Multi-Class Segmentation pdf

Sébastien Ourselin, Lorenz Berger, Eoin Hyde, 2018, ArXiv.

A Continuum Robot and Control Interface for Surgical Assist in Fetoscopic Interventions

Sébastien Ourselin, Danail Stoyanov, Vijay Pawar, 2017, IEEE Robotics and Automation Letters.

Block Matching: A General Framework to Improve Robustness of Rigid Registration of Medical Images

Sébastien Ourselin, Nicholas Ayache, Alexis Roche, 2000, MICCAI.

Measuring Cortical Neurite-Dispersion and Perfusion in Preterm-Born Adolescents Using Multi-modal MRI

David Atkinson, Sébastien Ourselin, M. Jorge Cardoso, 2015, MICCAI.

Automatic Delineation of Sulci and Improved Partial Volume Classification for Accurate 3D Voxel-Based Cortical Thickness Estimation from MR

Sébastien Ourselin, Olivier Salvado, Jurgen Fripp, 2008, MICCAI.

Consistent multi-time-point brain atrophy estimation from the boundary shift integral

Sébastien Ourselin, Nick C. Fox, Gerard R. Ridgway, 2012, NeuroImage.

Comparison of phantom and registration scaling corrections using the ADNI cohort

Michael Weiner, Sébastien Ourselin, Clifford R. Jack, 2009, NeuroImage.

Image Based Surgical Instrument Pose Estimation with Multi-class Labelling and Optical Flow

Sébastien Ourselin, David J. Hawkes, Danail Stoyanov, 2015, MICCAI.

Substantially thinner internal granular layer and reduced molecular layer surface in the cerebellar cortex of the Tc1 mouse model of down syndrome – a comprehensive morphometric analysis with active staining contrast-enhanced MRI

Sébastien Ourselin, Marc Modat, Mark F. Lythgoe, 2020, NeuroImage.

Automated multiple trajectory planning algorithm for the placement of stereo-electroencephalography (SEEG) electrodes in epilepsy treatment

Sébastien Ourselin, Maria A. Zuluaga, Sjoerd B. Vos, 2016, International Journal of Computer Assisted Radiology and Surgery.

Longitudinal segmentation of age‐related white matter hyperintensities

Sébastien Ourselin, Manuel Jorge Cardoso, Carole H. Sudre, 2017, Medical Image Anal..

Progressive logopenic/phonological aphasia: Erosion of the language network

Sébastien Ourselin, Martin Rossor, Gerard R. Ridgway, 2010, NeuroImage.

Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2010, Medical Imaging.

Learning joint lesion and tissue segmentation from task-specific hetero-modal datasets

Sébastien Ourselin, Wenqi Li, Tom Vercauteren, 2019, MIDL.

Generative atlases and atlas selection for C11-PIB PET-PET registration of elderly, mild cognitive impaired and Alzheimer disease patients

Sébastien Ourselin, Olivier Salvado, Jurgen Fripp, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections

Sébastien Ourselin, Marc Modat, Bruce Fischl, 2018, Medical Image Anal..

Interactive Medical Image Segmentation Using Deep Learning With Image-Specific Fine Tuning

Sébastien Ourselin, Maria A. Zuluaga, Guotai Wang, 2017, IEEE Transactions on Medical Imaging.

Refractive Structure-from-Motion Through a Flat Refractive Interface

Sébastien Ourselin, Danail Stoyanov, Tom Vercauteren, 2017, 2017 IEEE International Conference on Computer Vision (ICCV).

Automated segmentation of the menisci from MR images

Stuart Crozier, Sébastien Ourselin, Olivier Salvado, 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Towards a Visual Programming Environment Based on ITK for Medical Image Analysis

Sébastien Ourselin, Rongxin Li, Hoang D. K. Le, 2005, Digital Image Computing: Techniques and Applications (DICTA'05).

A Computer Assisted Planning System for the Placement of sEEG Electrodes in the Treatment of Epilepsy

Sébastien Ourselin, Maria A. Zuluaga, John S. Duncan, 2014, IPCAI.

Estimation of shape model parameters for 3D surfaces

Sébastien Ourselin, Jurgen Fripp, Bjarne K. Ersbøll, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Voxelwise atlas rating for computer assisted diagnosis: Application to congenital heart diseases of the great arteries

Ninon Burgos, Sébastien Ourselin, Maria A. Zuluaga, 2015, Medical Image Anal..

Motion tracking of left ventricle and coronaries in 4D CTA

Sébastien Ourselin, Daniel Rueckert, Xiahai Zhuang, 2011, Medical Imaging.

Using fractional gradient information in non-rigid image registration: application to breast MRI

Sébastien Ourselin, Marc Modat, Andrew Melbourne, 2012, Medical Imaging.

Longitudinal measurement of the developing grey matter in preterm subjects using multi-modal MRI

Sébastien Ourselin, Marc Modat, Andrew Melbourne, 2015, NeuroImage.

Dynamically Balanced Online Random Forests for Interactive Scribble-Based Segmentation

Sébastien Ourselin, Maria A. Zuluaga, Jan Deprest, 2016, MICCAI.

Contact Modelling Based on Displacement Field Redistribution for Surgical Simulation

Sébastien Ourselin, Dan C. Popescu, Bryan Lee, 2004, MIAR.

Immediate ROI Search for 3-D Medical Images

Sébastien Ourselin, Marc Modat, Antonio Criminisi, 2012, MCBR-CDS.

Papillary Muscle Segmentation from a Multi-atlas Database: A Feasibility Study

Sébastien Ourselin, Maria A. Zuluaga, Silvia Schievano, 2015, STACOM@MICCAI.

Establishing Spatial Correspondence between the Inner Colon Surfaces from Prone and Supine CT Colonography

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2010, MICCAI.

Consistency of parametric registration in serial MRI studies of brain tumor progression

Sébastien Ourselin, H. Rolf Jäger, Marc Modat, 2008, International Journal of Computer Assisted Radiology and Surgery.

Wrapper Methods to Correct Mislabelled Training Data

Sébastien Ourselin, John Ashburner, Jonathan Young, 2013, 2013 International Workshop on Pattern Recognition in Neuroimaging.

Preterm birth affects the developmental synergy between cortical folding and cortical connectivity observed on multimodal MRI

Sébastien Ourselin, Andrew Melbourne, Giles S. Kendall, 2014, NeuroImage.

Nonrigid image registration with two-sided space-fractional partial differential equations

Sébastien Ourselin, Andrew Melbourne, Nathan D. Cahill, 2013, 2013 IEEE International Conference on Image Processing.

Expectation maximization classification and Laplacian based thickness measurement for cerebral cortex thickness estimation

Sébastien Ourselin, Mark Holden, Rafael Moreno-Vallecillo, 2007, SPIE Medical Imaging.

Brain MAPS: An automated, accurate and robust brain extraction technique using a template library

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2011, NeuroImage.

Longitudinal Cortical Thickness Estimation Using Khalimsky's Cubic Complex

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2011, MICCAI.

Special issue on the 10th International Conference on Medical Imaging and Computer Assisted Intervention--MICCAI 2007. Editorial.

Sébastien Ourselin, Nicholas Ayache, N. Ayache, 2008, Medical image analysis.

Multiple Orderings of Events in Disease Progression

Sébastien Ourselin, Nick C. Fox, Daniel C. Alexander, 2015, IPMI.

Interactive virtual 3D models of renal cancer patient anatomies alter partial nephrectomy surgical planning decisions and increase surgeon confidence compared to volume-rendered images

Sébastien Ourselin, Lorenz Berger, Eoin R. Hyde, 2019, International Journal of Computer Assisted Radiology and Surgery.

CT colonography: inverse-consistent symmetric registration of prone and supine inner colon surfaces

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2013, Medical Imaging.

An anatomically driven anisotropic diffusion filtering method for 3D SPECT reconstruction

Sébastien Ourselin, Stefano Pedemonte, Alexandre Bousse, 2012, Physics in medicine and biology.

Improved cortical thickness measurement from MR images using partial volume estimation

Sébastien Ourselin, Maria A. Zuluaga, Olivier Salvado, 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Evaluation of Six Registration Methods for the Human Abdomen on Clinically Acquired CT

Sébastien Ourselin, Daniel Rueckert, Marc Modat, 2016, IEEE Transactions on Biomedical Engineering.

Joint Multimodal Segmentation of Clinical CT and MR from Hip Arthroplasty Patients

Sébastien Ourselin, M. Jorge Cardoso, Marc Modat, 2017, MSKI@MICCAI.

Evaluation of algorithms for Multi-Modality Whole Heart Segmentation: An open-access grand challenge

Guang Yang, Guoyan Zheng, Jean-Yves Ramel, 2019, Medical Image Anal..

Real-Time Surgical Simulation Using Reduced Order Finite Element Analysis

Stuart Crozier, Sébastien Ourselin, Zeike A. Taylor, 2010, MICCAI.

Grey Matter Sublayer Thickness Estimation in the Mouse Cerebellum

Sébastien Ourselin, Maria A. Zuluaga, Marc Modat, 2015, MICCAI.

Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge

Simon Andermatt, Simon Pezold, Sang Hyun Park, 2019, IEEE Transactions on Medical Imaging.

A multi-path approach to histology volume reconstruction

Sébastien Ourselin, Marc Modat, Tarek Yousry, 2015, 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI).

Fusion of Histological Sections and MR Images: Towards the Construction of an Atlas of the Human Basal Ganglia

Sébastien Ourselin, Nicholas Ayache, Grégoire Malandain, 2001, MICCAI.

An Adaptive Sampling Scheme to Efficiently Train Fully Convolutional Networks for Semantic Segmentation

Sébastien Ourselin, M. Jorge Cardoso, Lorenz Berger, 2017, MIUA.

NiftyFit: a Software Package for Multi-parametric Model-Fitting of 4D Magnetic Resonance Imaging Data

David Atkinson, Sébastien Ourselin, Andrew Melbourne, 2016, Neuroinformatics.

In vivo imaging of tau pathology using multi-parametric quantitative MRI

Sébastien Ourselin, Emily C. Collins, Marc Modat, 2015, NeuroImage.

ASL-incorporated Pharmacokinetic Modelling of PET Data With Reduced Acquisition Time: Application to Amyloid Imaging

Jieqing Jiao, Brian F. Hutton, Sébastien Ourselin, 2016, MICCAI.

Super‐resolution for upper abdominal MRI: Acquisition and post‐processing protocol optimization using brain MRI control data and expert reader validation

David Atkinson, Sébastien Ourselin, Paolo De Coppi, 2019, Magnetic resonance in medicine.

Fast PET reconstruction using Multi-scale Fully Convolutional Neural Networks pdf

Jieqing Jiao, Sébastien Ourselin, 2017, ArXiv.

Accuracy validation of an image guided laparoscopy system for liver resection

Sébastien Ourselin, David J. Hawkes, Danail Stoyanov, 2015, Medical Imaging.

In Use Parameter Estimation of Inertial Sensors by Detecting Multilevel Quasi-static States

Sébastien Ourselin, Ashutosh Saxena, Gaurav Gupta, 2005, KES.

Fast free-form deformation using graphics processing units

Sébastien Ourselin, Zeike A. Taylor, Marc Modat, 2010, Comput. Methods Programs Biomed..

Reconstructing a 3D structure from serial histological sections

Sébastien Ourselin, Nicholas Ayache, Xavier Pennec, 2001, Image Vis. Comput..

Multiple contact approach to collision modelling in surgical simulation.

Sébastien Ourselin, Bryan Lee, Dan C Popescu, 2005, Studies in health technology and informatics.

PIB-PET SEGMENTATION FOR AUTOMATIC SUVR NORMALISATION WITHOUT MR INFORMATION

Sébastien Ourselin, Pierrick Bourgeat, Christopher Rowe, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

The eight articles finally selected reflect the range of high-quality research presented at MICCAI 2007.

Sébastien Ourselin, Terry M Peters, S. Ourselin, 2008, Computer aided surgery : official journal of the International Society for Computer Aided Surgery.

Automatic assessment of volume asymmetries applied to hip abductor muscles in patients with hip arthroplasty

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2015, Medical Imaging.

MRI k-Space Motion Artefact Augmentation: Model Robustness and Task-Specific Uncertainty

Sébastien Ourselin, M. Jorge Cardoso, Carole H. Sudre, 2018, MIDL.

Towards anatomical modelling of multiple organs interaction using real time GPU based non-linear elasticity

Sébastien Ourselin, Zeike A. Taylor, Mario Cheng, 2008, MMVR.

Efficient Nonlinear FEM for Soft Tissue Modelling and Its GPU Implementation within the Open Source Framework SOFA

Stephane Cotin, Jérémie Allard, Sébastien Ourselin, 2008, ISBMS.

Spatial calibration of a 2D/3D ultrasound using a tracked needle

Sébastien Ourselin, Danail Stoyanov, Francisco Vasconcelos, 2016, International Journal of Computer Assisted Radiology and Surgery.

Robust Registration of Multi-modal Images: Towards Real-Time Clinical Applications

Sébastien Ourselin, Xavier Pennec, Radu Stefanescu, 2002, MICCAI.

Susceptibility artefact correction by combining B0 field maps and non-rigid registration using graph cuts

Sébastien Ourselin, Marc Modat, John S. Duncan, 2013, Medical Imaging.

Recalage d'images médicales par appariement de régions : application à la construction d'atlas histologiques 3D

Sébastien Ourselin, Sébastien Ourselin, 2002 .

DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation

Sébastien Ourselin, Maria A. Zuluaga, Jan Deprest, 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

Bayesian Model Selection for Pathological Data

Sébastien Ourselin, Manuel Jorge Cardoso, Josephine Barnes, 2014, MICCAI.

Optimisation of Arterial Spin Labelling Using Bayesian Experimental Design

Sébastien Ourselin, Andrew Melbourne, Jonathan D. Rohrer, 2016, MICCAI.

Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations pdf

Sébastien Ourselin, M. Jorge Cardoso, Wenqi Li, 2017, DLMIA/ML-CDS@MICCAI.

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge

D. Louis Collins, Sébastien Ourselin, M. Jorge Cardoso, 2015, NeuroImage.

Automated postoperative muscle assessment of hip arthroplasty patients using multimodal imaging joint segmentation

Sébastien Ourselin, Tom Vercauteren, Johann Henckel, 2020, Comput. Methods Programs Biomed..

Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks

Sébastien Ourselin, Jan Deprest, Guotai Wang, 2018, Neurocomputing.

A parallel-friendly normalized mutual information gradient for free-form registration

Sébastien Ourselin, Zeike A. Taylor, Marc Modat, 2009, Medical Imaging.

Bayesian Model Selection for Pathological Neuroimaging Data Applied to White Matter Lesion Segmentation

Sébastien Ourselin, Manuel Jorge Cardoso, Josephine Barnes, 2015, IEEE Transactions on Medical Imaging.

Automatic Brain Tumor Segmentation Using Cascaded Anisotropic Convolutional Neural Networks pdf

Sébastien Ourselin, Guotai Wang, Wenqi Li, 2017, BrainLes@MICCAI.

An Automated Localization, Segmentation and Reconstruction Framework for Fetal Brain MRI

Sébastien Ourselin, Andrew Melbourne, Jan Deprest, 2018, MICCAI.

Partial least squares modelling for imaging-genetics in Alzheimer's disease: Plausibility and generalization

Paul M. Thompson, Sébastien Ourselin, Neda Jahanshad, 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

Computation on shape manifold for atlas generation: application to whole heart segmentation of cardiac MRI

Sébastien Ourselin, Daniel Rueckert, Haiyan Wang, 2013, Medical Imaging.

In vivo estimation of target registration errors during augmented reality laparoscopic surgery

Sébastien Ourselin, David J. Hawkes, Kurinchi Gurusamy, 2018, International Journal of Computer Assisted Radiology and Surgery.

Short Acquisition Time PET/MR Pharmacokinetic Modelling Using CNNs

Jieqing Jiao, Brian F. Hutton, Sébastien Ourselin, 2018, MICCAI.

MRI Measurement of Placental Perfusion and Fetal Blood Oxygen Saturation in Normal Pregnancy and Placental Insufficiency

David Atkinson, Sébastien Ourselin, Andrew Melbourne, 2018, MICCAI.

BSP-Assisted Constrained Tetrahedralization

Sébastien Ourselin, Bhautik J. Joshi, S. Ourselin, 2003, IMR.

Volumetric reconstruction from printed films: Enabling 30 year longitudinal analysis in MR neuroimaging

Sébastien Ourselin, M. Jorge Cardoso, Ferran Prados, 2018, NeuroImage.

Interventional Photoacoustic Imaging of the Human Placenta with Ultrasonic Tracking for Minimally Invasive Fetal Surgeries

Adrien E. Desjardins, Paul C. Beard, Sébastien Ourselin, 2015, MICCAI.

Efficient Gaussian Process-Based Modelling and Prediction of Image Time Series

Sébastien Ourselin, Daniel C. Alexander, Marco Lorenzi, 2015, IPMI.

Edge preserving bowsher prior with nonlocal weighting for 3D spect reconstruction

Brian F. Hutton, Simon R. Arridge, Sébastien Ourselin, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Probabilistic non-linear registration with spatially adaptive regularisation

Mark W. Woolrich, Sébastien Ourselin, Marc Modat, 2015, Medical Image Anal..

A Multi-image Graph Cut Approach for Cardiac Image Segmentation and Uncertainty Estimation

Sébastien Ourselin, Daniel Rueckert, Haiyan Wang, 2011, STACOM.

Inverse-Consistent Symmetric Free Form Deformation

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2012, WBIR.

Estimating anatomical trajectories with Bayesian mixed-effects modeling

Sébastien Ourselin, Karl J. Friston, William D. Penny, 2015 .

Head size, age and gender adjustment in MRI studies: a necessary nuisance?

Sébastien Ourselin, Nick C. Fox, Gerard R. Ridgway, 2010, NeuroImage.

Spatio-Temporal Shape Analysis of Cross-Sectional Data for Detection of Early Changes in Neurodegenerative Disease

Sébastien Ourselin, Marc Modat, Stanley Durrleman, 2016, SeSAMI@MICCAI.

Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps

Sébastien Ourselin, Maria A. Zuluaga, Olivier Salvado, 2009, Medical Image Anal..

Geodesic Information Flows

Sébastien Ourselin, Daniel Rueckert, Marc Modat, 2012, MICCAI.

Elastic Registration of Geodesic Vascular Graphs pdf

Sébastien Ourselin, Stefano Moriconi, Maria A. Zuluaga, 2018, MICCAI.

4-D Generative Model for PET/MRI Reconstruction

Brian F. Hutton, Simon R. Arridge, Sébastien Ourselin, 2011, MICCAI.

Thalamic Nuclei Segmentation Using Tractography, Population-Specific Priors and Local Fibre Orientation

Sébastien Ourselin, M. Jorge Cardoso, Sjoerd B. Vos, 2018, MICCAI.

Developing a Next Generation Colonoscopy Simulator

Sébastien Ourselin, Olivier Salvado, Oscar Acosta, 2010, Int. J. Image Graph..

Re-localisation of a biopsy site in endoscopic images and characterisation of its uncertainty

Sébastien Ourselin, David J. Hawkes, Laurence B. Lovat, 2012, Medical Image Anal..

Itkboard: A Visual Dataflow Language for Biomedical Image Processing

Sébastien Ourselin, Rongxin Li, John M. Potter, 2007, ICSOFT.

Benchmark for Algorithms Segmenting the Left Atrium From 3D CT and MRI Datasets

Jürgen Weese, Sébastien Ourselin, Kawal S. Rhode, 2015, IEEE Transactions on Medical Imaging.

Efficient Anatomy Driven Automated Multiple Trajectory Planning for Intracranial Electrode Implantation

Sébastien Ourselin, Maria A. Zuluaga, John S. Duncan, 2016, MICCAI.

Generation of Curved Planar Reformations from Magnetic Resonance Images of the Spine

Bostjan Likar, Franjo Pernus, Sébastien Ourselin, 2006, MICCAI.

An event-based model for disease progression and its application in familial Alzheimer's disease and Huntington's disease

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2012, NeuroImage.

Computation of the Mid-Sagittal Plane in 3D Medical Images of the Brain

Sébastien Ourselin, Nicholas Ayache, Sylvain Prima, 2000, ECCV.

EFFICIENT USE OF CEREBRAL CORTICAL THICKNESS TO CORRECT BRAIN MR SEGMENTATION

Sébastien Ourselin, Pierrick Bourgeat, Thanh-Mai Diep, 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Shape based segmentation of MRIs of the bones in the knee using phase and intensity information

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2007, SPIE Medical Imaging.

Combined 2D and 3D tracking of surgical instruments for minimally invasive and robotic-assisted surgery

Sébastien Ourselin, David J. Hawkes, Danail Stoyanov, 2016, International Journal of Computer Assisted Radiology and Surgery.

Real-Time Topology Modification for Finite Element Models with Haptic Feedback

Sébastien Ourselin, Dan C. Popescu, Bhautik J. Joshi, 2005, CAIP.

MIRIAD—Public release of a multiple time point Alzheimer's MR imaging dataset

Sébastien Ourselin, Nick C. Fox, Gerard R. Ridgway, 2013, NeuroImage.

Co-registration of Histological, Optical and MR Data of the Human Brain

Sébastien Ourselin, Nicholas Ayache, Grégoire Malandain, 2002, MICCAI.

Deep Boosted Regression for MR to CT Synthesis

Pawel Markiewicz, David Atkinson, Brian F. Hutton, 2018, SASHIMI@MICCAI.

Handheld Real-Time LED-Based Photoacoustic and Ultrasound Imaging System for Accurate Visualization of Clinical Metal Needles and Superficial Vasculature to Guide Minimally Invasive Procedures

Adrien E. Desjardins, Sébastien Ourselin, Efthymios Maneas, 2018, Sensors.

Bolstering Heuristics for Statistical Validation of Prediction Algorithms

Brian F. Hutton, Sébastien Ourselin, Maria A. Zuluaga, 2015, 2015 International Workshop on Pattern Recognition in NeuroImaging.

Image reconstruction of mMR PET data using the open source software STIR

Jieqing Jiao, Ninon Burgos, David Atkinson, 2014, EJNMMI Physics.

Log-Euclidean free-form deformation

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2011, Medical Imaging.

Maximum-Likelihood Joint Image Reconstruction/Motion Estimation in Attenuation-Corrected Respiratory Gated PET/CT Using a Single Attenuation Map

David Atkinson, Brian F. Hutton, Simon R. Arridge, 2016, IEEE Transactions on Medical Imaging.

Automated brain extraction using Multi-Atlas Propagation and Segmentation (MAPS)

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Maximum-likelihood joint image reconstruction and motion estimation with misaligned attenuation in TOF-PET/CT

David Atkinson, Sébastien Ourselin, Kris Thielemans, 2016, Physics in medicine and biology.

Steady-State Model of the Radio-Pharmaceutical Uptake for MR-PET

Brian F. Hutton, Simon R. Arridge, Sébastien Ourselin, 2012, MICCAI.

An Atlas-Based Segmentation Propagation Framework Using Locally Affine Registration - Application to Automatic Whole Heart Segmentation

Simon R. Arridge, Sébastien Ourselin, Kawal S. Rhode, 2008, MICCAI.

Accurate Localization of Optic Radiation During Neurosurgery in an Interventional MRI Suite

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2012, IEEE Transactions on Medical Imaging.

A Survey of Methods for 3D Histology Reconstruction

Sébastien Ourselin, Marc Modat, Juan Eugenio Iglesias, 2018, Medical Image Anal..

Efficient topology modification and deformation for finite element models using condensation.

Sébastien Ourselin, Bryan Lee, Dan C Popescu, 2006, Studies in health technology and informatics.

A mixed-reality surgical trainer with comprehensive sensing for fetal laser minimally invasive surgery

Sébastien Ourselin, Kathleen Denis, Danail Stoyanov, 2018, International Journal of Computer Assisted Radiology and Surgery.

Combined Reconstruction and Registration of Digital Breast Tomosynthesis

Guang Yang, Simon R. Arridge, Sébastien Ourselin, 2010, Digital Mammography / IWDM.

The Empirical Variance Estimator for Computer Aided Diagnosis: Lessons for Algorithm Validation

Brian F. Hutton, Sébastien Ourselin, Maria A. Zuluaga, 2014, MICCAI.

Intrapapillary capillary loop classification in magnification endoscopy: open dataset and baseline methodology

Sébastien Ourselin, Danail Stoyanov, Tom Vercauteren, 2020, International Journal of Computer Assisted Radiology and Surgery.

Hand–eye calibration for rigid laparoscopes using an invariant point

Sébastien Ourselin, David J. Hawkes, Danail Stoyanov, 2016, International Journal of Computer Assisted Radiology and Surgery.

A hybrid fem-based method for aligning prone and supine images for image guided breast surgery

Sébastien Ourselin, Marc Modat, David J. Hawkes, 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Registration of MRI and iUS Data to Compensate Brain Shift Using a Symmetric Block-Matching Based Approach

Sébastien Ourselin, Marc Modat, Tom Vercauteren, 2018, POCUS/BIVPCS/CuRIOUS/CPM@MICCAI.

Scale Factor Point Spread Function Matching: Beyond Aliasing in Image Resampling pdf

Sébastien Ourselin, Marc Modat, Manuel Jorge Cardoso, 2015, MICCAI.

Pneumatic haptic interface fuzzy controller for simulation of abdominal palpations during colonoscopy

Sébastien Ourselin, Olivier Salvado, Marcus Watson, 2009, World Haptics 2009 - Third Joint EuroHaptics conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems.

Combining Front Propagation with Shape Knowledge for Accurate Curvilinear Modelling

Sébastien Ourselin, Rongxin Li, 2003, MICCAI.

Toward Detection and Localization of Instruments in Minimally Invasive Surgery

Sébastien Ourselin, David J. Hawkes, Danail Stoyanov, 2013, IEEE Transactions on Biomedical Engineering.

Sébastien Ourselin, M. Jorge Cardoso, Marc Modat, 2013, Medical Image Anal..

Nonrigid correction of interleaving artefacts in pelvic MRI

Sébastien Ourselin, Olivier Salvado, Jurgen Fripp, 2009, Medical Imaging.

The NifTK software platform for image-guided interventions: platform overview and NiftyLink messaging

Sébastien Ourselin, David J. Hawkes, Steve Thompson, 2014, International Journal of Computer Assisted Radiology and Surgery.

MRI to X-ray mammography intensity-based registration with simultaneous optimisation of pose and biomechanical transformation parameters

Nico Karssemeijer, Sébastien Ourselin, Zeike A. Taylor, 2014, Medical Image Anal..

Automatic Segmentation of the Knee Bones using 3D Active Shape Models

Stuart Crozier, Sébastien Ourselin, Jurgen Fripp, 2006, 18th International Conference on Pattern Recognition (ICPR'06).

SEEG Trajectory Planning: Combining Stability, Structure and Scale in Vessel Extraction

Sébastien Ourselin, Maria A. Zuluaga, Manuel Jorge Cardoso, 2014, MICCAI.

The Use of Unwrapped Phase in MR Image Segmentation: A Preliminary Study

Stuart Crozier, Sébastien Ourselin, Andrew L. Janke, 2005, MICCAI.

A comparison of voxel and surface based cortical thickness estimation methods

Sébastien Ourselin, Marc Modat, Nick C. Fox, 2011, NeuroImage.

Inference of Cerebrovascular Topology With Geodesic Minimum Spanning Trees

Sébastien Ourselin, Maria A. Zuluaga, H. Rolf Jäger, 2019, IEEE Transactions on Medical Imaging.

Landmark detection and coupled patch registration for cardiac motion tracking

Sébastien Ourselin, Xianliang Wu, Daniel Rueckert, 2013, Medical Imaging.

Fitting parametric models of diffusion MRI in regions of partial volume

Sébastien Ourselin, Andrew Melbourne, Giles S. Kendall, 2016, SPIE Medical Imaging.

Weakly-supervised convolutional neural networks for multimodal image registration

Sébastien Ourselin, Marc Modat, Dean C. Barratt, 2018, Medical Image Anal..

Stability, structure and scale: improvements in multi-modal vessel extraction for SEEG trajectory planning

Sébastien Ourselin, Maria A. Zuluaga, Manuel Jorge Cardoso, 2015, International Journal of Computer Assisted Radiology and Surgery.

3D Ultrasonic Needle Tracking with a 1.5D Transducer Array for Guidance of Fetal Interventions

Adrien E. Desjardins, Sébastien Ourselin, Jean-Martial Mari, 2016, MICCAI.

Anomaly detection for the individual analysis of brain PET images

Sébastien Ourselin, M. Jorge Cardoso, Stanley Durrleman, 2021, Journal of medical imaging.

Myelination of Preterm Brain Networks at Adolescence

Sébastien Ourselin, Andrew Melbourne, Neil Marlow, 2021, UNSURE/PIPPI@MICCAI.

Neuropsychiatric Disease Classification Using Functional Connectomics - Results of the Connectomics in NeuroImaging Transfer Learning Challenge

Sébastien Ourselin, Andrew Melbourne, Neil Marlow, 2021, Medical Image Anal..

Acquisition-invariant brain MRI segmentation with informative uncertainties pdf

Sébastien Ourselin, M. Jorge Cardoso, Ivana Drobnjak, 2021, Medical Image Anal..

Imitation learning for improved 3D PET/MR attenuation correction

David Atkinson, Sébastien Ourselin, Kris Thielemans, 2021, Medical Image Anal..

Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets

Sébastien Ourselin, Tom Vercauteren, Manuel Jorge Cardoso, 2021, Medical Image Anal..

CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation

Sébastien Ourselin, Tom Vercauteren, Tao Song, 2021, IEEE Transactions on Medical Imaging.

Patient-specific prediction of SEEG electrode bending for stereotactic neurosurgical planning

Sébastien Ourselin, Sjoerd B. Vos, John S. Duncan, 2021, International Journal of Computer Assisted Radiology and Surgery.

Hemodynamic matrix factorization for functional magnetic resonance imaging

Sébastien Ourselin, Andrew Melbourne, Michael Hütel, 2021, NeuroImage.

Texture-Based Analysis of Fetal Organs in Fetal Growth Restriction

Sébastien Ourselin, Andrew Melbourne, Dimitra Flouri, 2021, UNSURE/PIPPI@MICCAI.

Equitable modelling of brain imaging by counterfactual augmentation with morphologically constrained 3D deep generative models pdf

Sébastien Ourselin, Parashkev Nachev, Geraint Rees, 2021, Medical Image Anal..

The Role of MRI Physics in Brain Segmentation CNNs: Achieving Acquisition Invariance and Instructive Uncertainties pdf

Sébastien Ourselin, Manuel Jorge Cardoso, Ivana Drobnjak, 2021, SASHIMI@MICCAI.

Uncertainty analysis of MR-PET image registration for precision neuro-PET imaging

Sébastien Ourselin, Marc Modat, M. Jorge Cardoso, 2021, NeuroImage.

Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation

Sébastien Ourselin, Marc Modat, Tom Vercauteren, 2021, MICCAI.

Intra-operative OCT (iOCT) Image Quality Enhancement: A Super-Resolution Approach Using High Quality iOCT 3D Scans

Sébastien Ourselin, Tom Vercauteren, Christos Bergeles, 2021, OMIA@MICCAI.

Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware

Sébastien Ourselin, Tom Vercauteren, Matthew J. Clarkson, 2021, International Journal of Computer Assisted Radiology and Surgery.

CARRNN: A Continuous Autoregressive Recurrent Neural Network for Deep Representation Learning from Sporadic Temporal Data pdf

Sébastien Ourselin, Mostafa Mehdipour-Ghazi, Lauge Sørensen, 2021, IEEE transactions on neural networks and learning systems.

High-speed photoacoustic-guided wavefront shaping with a real-valued intensity transmission matrix

Sébastien Ourselin, Tom Vercauteren, Tianrui Zhao, 2021, European Conference on Biomedical Optics.

A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections

Sébastien Ourselin, Tom Vercauteren, John S. Duncan, 2021, International Journal of Computer Assisted Radiology and Surgery.

Computer-aided diagnosis of prostate cancer using multiparametric MRI and clinical features: A patient-level classification framework

Sébastien Ourselin, Shonit Punwani, Hashim Uddin Ahmed, 2021, Medical Image Anal..

2 D-3 D Pose Tracking of Rigid Instruments in Minimally Invasive Surgery

Sébastien Ourselin, David J. Hawkes, Danail Stoyanov, 2014 .

Fully-Automated μMRI Morphometric Phenotyping of the Tc1 Mouse Model of Down Syndrome

Sébastien Ourselin, Marc Modat, Jon O Cleary, 2016, PloS one.

Iterative framework for the joint segmentation and CT synthesis of MR images: application to MRI-only radiotherapy treatment planning

Ninon Burgos, Sébastien Ourselin, Marc Modat, 2017, Physics in medicine and biology.

The pattern of atrophy in familial Alzheimer disease

Andrew J. Saykin, Paul M. Thompson, Sébastien Ourselin, 2013, Neurology.

Evaluation of a direct motion estimation/correction method in respiratory‐gated PET/MRI with motion‐adjusted attenuation

David Atkinson, Sébastien Ourselin, Kris Thielemans, 2017, Medical physics.

Toward adaptive radiotherapy for head and neck patients: Uncertainties in dose warping due to the choice of deformable registration algorithm.

Sébastien Ourselin, Marc Modat, Marcel van Herk, 2015, Medical physics.

Clinical Impact of Respiratory Motion Correction in Simultaneous PET / MR with a Joint PET / MR Predictive Motion Model

David Atkinson, Brian F. Hutton, Sébastien Ourselin, 2018 .

Automatic Brain

Sébastien Ourselin, Tom Vercauteren, Guotai Wang, 2019 .

Direct Parametric Reconstruction With Joint Motion Estimation/Correction for Dynamic Brain PET Data

Jieqing Jiao, Ninon Burgos, David Atkinson, 2017, IEEE Transactions on Medical Imaging.

NeuroImage: Clinical

Brian F. Hutton, Sébastien Ourselin, Maria A. Zuluaga, 2022 .

Toward adaptive radiotherapy for head and neck patients: Feasibility study on using CT-to-CBCT deformable registration for "dose of the day" calculations.

Sébastien Ourselin, Marc Modat, Catarina Veiga, 2014, Medical physics.

Towards Detection and Localisation of Instruments in Minimally Invasive Surgery

Sébastien Ourselin, David J. Hawkes, Danail Stoyanov, 2012 .

Relevance of time‐dependence for clinically viable diffusion imaging of the spinal cord

Sébastien Ourselin, Ferran Prados, Daniel C. Alexander, 2018, Magnetic resonance in medicine.

Computational modelling of pathogenic protein spread in neurodegenerative diseases

Sébastien Ourselin, Marc Modat, Konstantinos Georgiadis, 2018, PloS one.

Practical PET Respiratory Motion Correction in Clinical PET/MR

David Atkinson, Sébastien Ourselin, Kris Thielemans, 2015, The Journal of Nuclear Medicine.

Automatic atlas-based segmentation of the prostate : A MICCAI 2009 Prostate Segmentation Challenge entry

Sébastien Ourselin, Olivier Salvado, Jurgen Fripp, 2009 .

Automatic Structural Parcellation of Mouse Brain MRI Using Multi-Atlas Label Fusion

Sébastien Ourselin, M. Jorge Cardoso, Marc Modat, 2014, PloS one.