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Hayden C. Metsky, Arjun Khanna, Matthew P Frosch, 2017, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak

Katherine C DeRuff, Catherine M. Brown, J. Grimsby, 2021, Cell.

Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics

Pardis C Sabeti, G. Nolan, J. Rinn, 2020, Cell.

RSV Surge in the USA and Viral Lineages, 2022

Katherine C DeRuff, S. Schaffner, J. Luban, 2023, The New England journal of medicine.

Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.

Melis N. Anahtar, Katherine C DeRuff, Pardis C Sabeti, 2020, medRxiv.

Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework

Lily A. Chylek, Belinda B. Flynn, Katherine C DeRuff, 2022, Med.

Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques

Pardis C Sabeti, J. Rinn, Marta Melé, 2023, Nature communications.

Single-cell profiling of Ebola virus infection in vivo reveals viral and host transcriptional dynamics

Pardis C Sabeti, G. Nolan, J. Rinn, 2020, bioRxiv.

Integrated sample inactivation, amplification, and Cas13-based detection of SARS-CoV-2

Tinna-Solveig F. Kosoko-Thoroddsen, Pardis C Sabeti, N. Bergman, 2020, bioRxiv.

In vivo single-cell profiling of lncRNAs during Ebola virus infection

Pardis C Sabeti, J. Rinn, Marta Melé, 2022, bioRxiv.

Babesia microti Variant With Multiple Resistance Mutations Detected in an Immunocompromised Patient Receiving Atovaquone Prophylaxis

J. Branda, J. Lemieux, N. Issa, 2023, Open forum infectious diseases.

Distinguishing Severe Acute Respiratory Syndrome Coronavirus 2 Persistence and Reinfection: A Retrospective Cohort Study

Melis N. Anahtar, Pardis C Sabeti, E. Rosenberg, 2022, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: a guide and case study in setting up an emergency-use, laboratory-developed molecular microbiological assay

Melis N. Anahtar, Julie M. Batten, Lauren L. Ritterhouse, 2021, Journal of Clinical Pathology.

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: A guide and case study in setting up an emergency-use, laboratory-developed molecular assay

Melis N. Anahtar, Pardis C Sabeti, Julie M. Batten, 2020, medRxiv.

Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts

Katherine C DeRuff, Pardis C Sabeti, Catherine M. Brown, 2021, medRxiv.

Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework

Lily A. Chylek, Belinda B. Flynn, S. Schaffner, 2022, Med.

The 2022 RSV surge was driven by multiple viral lineages

Pardis C Sabeti, S. Schaffner, J. Luban, 2023, medRxiv.