Darren J. Wilkinson

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Bayesian emulation and calibration of an individual-based model of microbial communities

O. K. Oyebamiji, Darren J. Wilkinson, B. Li, 2019, J. Comput. Sci..

Bayesian inference and MCMC

Darren J. Wilkinson, D. Wilkinson, 2011 .

Moment closure based parameter inference of stochastic kinetic models

Darren J. Wilkinson, Peter Milner, Colin S. Gillespie, 2013, Stat. Comput..

Linking systems biology models to data: A stochastic kinetic model of p53 oscillations

Darren J. Wilkinson, Richard J. Boys, Carole J. Proctor, 2018, Oxford Handbooks Online.

Bayesian methods in bioinformatics and computational systems biology

Darren J. Wilkinson, D. Wilkinson, 2006, Briefings Bioinform..

Customizable views on semantically integrated networks for systems biology

Matthew R. Pocock, Darren J. Wilkinson, Phillip W. Lord, 2011, Bioinform..

An integrated dataset for in silico drug discovery

Matthew R. Pocock, Darren J. Wilkinson, Phillip W. Lord, 2010, J. Integr. Bioinform..

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

Michael Hucka, Sven Sahle, Darren J. Wilkinson, 2010, J. Integr. Bioinform..

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core

Michael Hucka, Sven Sahle, Darren J. Wilkinson, 2010 .

CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models

Darren J. Wilkinson, Colin S. Gillespie, Richard J. Boys, 2010, Briefings Bioinform..

Conditional simulation from highly structured Gaussian systems, with application to blocking-MCMC for the Bayesian analysis of very large linear models

Darren J. Wilkinson, Stephen K. H. Yeung, S. K. Yeung, 2002, Stat. Comput..

A Social Network Analysis of Articles on Social Network Analysis pdf

Darren J. Wilkinson, Clement Lee, D. Wilkinson, 2018, ArXiv.

Detecting homogeneous segments in DNA sequences by using hidden Markov models

Darren J. Wilkinson, Richard J. Boys, Daniel A. Henderson, 2000 .

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2

Chris J. Myers, Claudine Chaouiya, Matthias König, 2018, J. Integr. Bioinform..

Bayesian hierarchical modelling for inferring genetic interactions in yeast

Darren J. Wilkinson, David A. Lydall, Conor Lawless, 2014, Journal of the Royal Statistical Society. Series C, Applied statistics.

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core

Chris J. Myers, Dagmar Waltemath, Michael Hucka, 2018, J. Integr. Bioinform..

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core (Release 1 Candidate)

Michael Hucka, Sven Sahle, Darren J. Wilkinson, 2010 .

A network epidemic model for online community commissioning data

Darren J. Wilkinson, Andrew Garbett, Clement Lee, 2017, Statistics and Computing.

Gaussian process emulation of an individual-based model simulation of microbial communities

P. Gupta, B. Li, O. K. Oyebamiji, 2017, J. Comput. Sci..

A sparse matrix approach to Bayesian computation in large linear models

Darren J. Wilkinson, Stephen K. H. Yeung, S. K. Yeung, 2004, Comput. Stat. Data Anal..

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies

Robert D. Finn, Gustavo A. Salazar, Guy Cochrane, 2017, Nucleic Acids Res..

SBML Test Suite Stochastic Test Cases 3.2.0

Darren J. Wilkinson, Colin S. Gillespie, Lucian P. Smith, 2016 .

Stochastic Modelling for Systems Biology

Darren J. Wilkinson, 2006 .

Bayesian inference for nonlinear multivariate diffusion models observed with error

Darren J. Wilkinson, Andrew Golightly, D. Wilkinson, 2008, Comput. Stat. Data Anal..

Fast Bayesian parameter estimation for stochastic logistic growth models

Darren J. Wilkinson, David A. Lydall, Conor Lawless, 2013, Biosyst..

Bayesian integration of networks without gold standards

Darren J. Wilkinson, Phillip W. Lord, Anil Wipat, 2012, Bioinform..

Representation of biochemical networks

Darren J. Wilkinson, D. Wilkinson, 2011 .

Tools for the SBML Community

Darren J. Wilkinson, Colin S. Gillespie, Richard J. Boys, 2006, Bioinform..

Stochastic Dynamical Systems

Darren J. Wilkinson, D. Wilkinson, 2011 .

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions

Chris J. Myers, Nicolas Le Novère, Dagmar Waltemath, 2015, J. Integr. Bioinform..

Scalable inference for Markov processes with intractable likelihoods

Darren J. Wilkinson, Colin S. Gillespie, Jamie Owen, 2014, Stat. Comput..

Discussion of Particle Markov chain Monte Carlo

Darren J. Wilkinson, Andrew Golightly, D. Wilkinson, 2008 .

Introduction to biological modelling

Darren J. Wilkinson, 2011 .

BASIS: an internet resource for network modelling

Darren J. Wilkinson, Colin S. Gillespie, Richard J. Boys, 2006, J. Integr. Bioinform..

Colonyzer: automated quantification of micro-organism growth characteristics on solid agar

Darren J. Wilkinson, David A. Lydall, Conor Lawless, 2010, BMC Bioinformatics.

Dynamic lattice-Markov spatio-temporal models for environmental data

Darren J. Wilkinson, Lm Garside, D. Wilkinson, 2003 .

Bayesian calibration of biological simulation models

Darren J. Wilkinson, Richard J. Boys, Daniel A. Henderson, 2007 .

Parallel Bayesian Computation

Darren J. Wilkinson, D. Wilkinson, 2005 .

Statistical emulation as a tool for analysing complex multiscale stochastic biological model outputs

Darren J. Wilkinson, Oluwole Kehinde Oyebamiji, 2016 .

The SBML discrete stochastic models test suite

Darren J. Wilkinson, Colin S. Gillespie, Thomas W. Evans, 2008, Bioinform..

A whole-body mathematical model of cholesterol metabolism and its age-associated dysregulation

Darren J. Wilkinson, Mark Mc Auley, Thomas B. L. Kirkwood, 2012, BMC Systems Biology.

Parameter inference for stochastic kinetic models of bacterial gene regulation: A Bayesian Approach to Systems Biology

Darren J. Wilkinson, D. Wilkinson, 2011 .

A review of stochastic block models and extensions for graph clustering

Darren J. Wilkinson, Clement Lee, D. Wilkinson, 2019, Applied Network Science.

Bayesian Emulation and Calibration of a Stochastic Computer Model of Mitochondrial DNA Deletions in Substantia Nigra Neurons

Darren J. Wilkinson, Richard J. Boys, Daniel A. Henderson, 2009 .

Bayesian inference for a discretely observed stochastic kinetic model

Darren J. Wilkinson, Richard J. Boys, Thomas B. L. Kirkwood, 2008, Stat. Comput..

An Object-Oriented Approach to Local Computation in Bayes Linear Belief Networks

Darren J. Wilkinson, D. Wilkinson, 1998, COMPSTAT.

A Hierarchical Model of Nonhomogeneous Poisson Processes for Twitter Retweets

Darren J. Wilkinson, Clement Lee, D. Wilkinson, 2018, Journal of the American Statistical Association.

Beyond the Gillespie algorithm

Darren J. Wilkinson, D. Wilkinson, 2011 .

Restricted Prior Inference for Complex Uncertainty Structures

Darren J. Wilkinson, Michael M. Goldstein, 2004, Annals of Mathematics and Artificial Intelligence.

Bayes linear analysis for graphical models: The geometric approach to local computation and interpretive graphics

Darren J. Wilkinson, Michael M. Goldstein, M. Goldstein, 2000, Stat. Comput..

Modelling Lipid Metabolism to Improve Healthy Ageing

Darren J. Wilkinson, Mark Mc Auley, Thomas B. L. Kirkwood, 2005, BMC Bioinformatics.

Stochastic Modelling for Systems Biology, Third Edition

Darren J. Wilkinson, D. Wilkinson, 2018 .

Bayesian inference for sparse VAR(1) models, with application to time course microarray data

Amanda Greenall, Darren J. Wilkinson, Colin S. Gillespie, 2011 .

Composable models for online Bayesian analysis of streaming data

Darren J. Wilkinson, Jonathan Law, D. Wilkinson, 2016, Stat. Comput..

Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models

Darren J. Wilkinson, Andrew Golightly, D. Wilkinson, 2006, J. Comput. Biol..

The Integration of Genetic Maps Using Bayesian Inference

Darren J. Wilkinson, Richard J. Boys, Howsun Jow, 2010, J. Comput. Biol..

CaliBayes: Integration of GRID based simulation and data resources for Bayesian calibration of biological models

Darren J. Wilkinson, Richard J. Boys, Daniel Henderson, 2005, BMC Bioinformatics.

Parameter estimation using moment-closure methods

Darren J. Wilkinson, Peter Milner, Colin S. Gillespie, 2008 .

Markov Chain Monte Carlo Algorithms for SDE Parameter Estimation

Darren J. Wilkinson, Andrew Golightly, D. Wilkinson, 2010, Learning and Inference in Computational Systems Biology.

Bayesian sequential inference for nonlinear multivariate diffusions

Darren J. Wilkinson, Andrew Golightly, D. Wilkinson, 2006, Stat. Comput..

A sparse Bayesian hierarchical vector autoregressive model for microbial dynamics in a wastewater treatment plant

Darren J. Wilkinson, Thomas P. Curtis, Tom M. W. Nye, 2021, Comput. Stat. Data Anal..

Online state and parameter estimation in Dynamic Generalised Linear Models

Darren J. Wilkinson, D. Wilkinson, Rui Vieira, 2016, 1608.08666.

Bayes Linear Variance Adjustment for Locally Linear DLMs

Darren J. Wilkinson, D. Wilkinson, 1997 .

BASIS: an internet resource for network modelling

Darren J. Wilkinson, Colin S. Gillespie, Richard J. Boys, 2006, J. Integr. Bioinform..

Modelling the actions of chaperones and their role in ageing

Darren J. Wilkinson, Colin S. Gillespie, Richard J. Boys, 2005, Mechanisms of Ageing and Development.