David Perahia

发表

A New Strategy for Atomic Flexible Fitting in Cryo-EM Maps by Molecular Dynamics with Excited Normal Modes (MDeNM-EMfit)

Mauricio G S Costa, Charline Fagnen, Catherine Vénien-Bryan, 2020, J. Chem. Inf. Model..

Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods.

Pemra Doruker, Ivet Bahar, David Perahia, 2020, Current opinion in structural biology.

Theoretical modeling of the heme group with a hybrid QM/MM method

Jean-Didier Maréchal, David Perahia, Liliane Mouawad, 2000 .

A method to explore transition paths in macromolecules. Applications to hemoglobin and phosphoglycerate kinase

David Perahia, Liliane Mouawad, Christophe Guilbert, 1995 .

Collective motions in glucosamine-6-phosphate synthase: influence of ligand binding and role in ammonia channelling and opening of the fructose-6-phosphate binding site.

Bernard Maigret, David Perahia, Nicolas Floquet, 2009, Journal of molecular biology.

Vibrational softening of a protein on ligand binding.

Franci Merzel, David Perahia, Jeremy C. Smith, 2011, The journal of physical chemistry. B.

CO migration pathways in cytochrome P450cam studied by molecular dynamics simulations

Safwat Abdel-Azeim, David Perahia, Liliane Mouawad, 2007, Protein science : a publication of the Protein Society.

Motions of an α‐helical polypeptide: Comparison of molecular and harmonic dynamics

Ronald M. Levy, David Perahia, M. Karplus, 1990 .

Low frequency motions in phosphoglycerate kinase. A normal mode analysis

David Perahia, Liliane Mouawad, Christophe Guilbert, 1996 .

Odorant Binding and Conformational Dynamics in the Odorant-binding Protein*

David Perahia, D. Pérahia, C. Robert, 2006, Journal of Biological Chemistry.

How to choose relevant multiple receptor conformations for virtual screening: a test case of Cdk2 and normal mode analysis

Olivier Sperandio, Bruno O. Villoutreix, Maria A. Miteva, 2010, European Biophysics Journal.

Activation of the ghrelin receptor is described by a privileged collective motion: a model for constitutive and agonist-induced activation of a sub-class A G-protein coupled receptor (GPCR).

David Perahia, Nicolas Floquet, D. Pérahia, 2010, Journal of molecular biology.

Sampling of conformational ensemble for virtual screening using molecular dynamics simulations and normal mode analysis.

Olivier Sperandio, Maria A Miteva, Gautier Moroy, 2015, Future medicinal chemistry.

Substrate binding modifies the hinge bending characteristics of human 3‐phosphoglycerate kinase: A molecular dynamics study

David Perahia, Zoltan Palmai, Corinne Lionne, 2009, Proteins.

Microscopic Dielectric Properties of Cytochrome c from Molecular Dynamics Simulations in Aqueous Solution

Thomas Simonson, David Perahia, D. Pérahia, 1995 .

Molecular dynamics of an a-helical polypeptide: Temperature dependence and deviation from harmonic behavior (protein dynamics/temperature factor/quantum corrections/fluctuations/normal modes)

Ronald M. Levy, David Perahia, Martin Karplus, 1982 .

Consensus modes, a robust description of protein collective motions from multiple-minima normal mode analysis--application to the HIV-1 protease.

Jean-Didier Maréchal, Paulo Mascarello Bisch, Pedro Geraldo Pascutti, 2010, Physical chemistry chemical physics : PCCP.