Brian Drawert

发表

A framework for discrete stochastic simulation on 3D moving boundary domains

Brian Drawert, Stefan Hellander, Michael Trogdon, 2016, The Journal of chemical physics.

Automatic and portable cloud deployment for scientific simulations

Chandra Krintz, Richard Wolski, Andreas Hellander, 2014, 2014 International Conference on High Performance Computing & Simulation (HPCS).

Reducing Complexity in Management of eScience Computations

Erik Elmroth, Andreas Hellander, Sverker Holmgren, 2012, 2012 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (ccgrid 2012).

Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting

Andreas Hellander, Brian Drawert, Linda R. Petzold, 2013, J. Comput. Phys..

A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems

Brian Drawert, Tau-Mu Yi, Linda R. Petzold, 2019, J. Comput. Phys..

Abstractions for Scaling eScience Applications to Distributed Computing Environments - A StratUm Integration Case Study in Molecular Systems Biology

Erik Elmroth, Andreas Hellander, Sverker Holmgren, 2012, BIOINFORMATICS.

Spatial stochastic simulation of biochemical systems

Brian Drawert, Linda R. Petzold, Mustafa Khammash, 2013 .

The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation.

Brian Drawert, Linda Petzold, Mustafa Khammash, 2010, The Journal of chemical physics.

CloudTracker: Using Execution Provenance to Optimize the Cost of Cloud Use

Chandra Krintz, Richard Wolski, Brian Drawert, 2014, GECON.

Language and Runtime Support for Automatic Configuration and Deployment of Scientific Computing Software over Cloud Fabrics

Chandra Krintz, Brian Drawert, Linda R. Petzold, 2012, Journal of Grid Computing.

MOLNs: A cloud platform for interactive, reproducible and scalable spatial stochastic computational experiments in systems biology using PyURDME

Andreas Hellander, Brian Drawert, Michael Trogdon, 2015, SIAM J. Sci. Comput..

The effect of cell geometry on polarization in budding yeast

Carlos Gomez, Brian Drawert, Michael Trogdon, 2018, PLoS Comput. Biol..

Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist

Sheng Wu, Chandra Krintz, Andreas Hellander, 2016, PLoS Comput. Biol..

Spatial Stochastic Dynamics Enable Robust Cell Polarization

Brian Drawert, Tau-Mu Yi, Linda R. Petzold, 2013, PLoS Comput. Biol..

URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

Andreas Hellander, Brian Drawert, Stefan Engblom, 2012, BMC Systems Biology.

Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion

Brian Drawert, Stefan Hellander, Linda R. Petzold, 2016, PLoS Comput. Biol..

GillesPy: A Python Package for Stochastic Model Building and Simulation

Andreas Hellander, Brian Drawert, Linda R. Petzold, 2016, IEEE Life Sciences Letters.

Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method

Zhen Li, Brian Drawert, Tau-Mu Yi, 2018, Data in brief.

URDME v. 1.2: User's manual

Pavol Bauer, Andreas Hellander, Brian Drawert, 2009 .

Quantitative Biology: Theory, Computational Methods, and Models

Terrence J. Sejnowski, Alan S. Perelson, Marco S. Nobile, 2018 .

Using stochastic epidemiological models to evaluate conservation strategies for endangered amphibians

Brian Drawert, Linda R Petzold, Cheryl J Briggs, 2017, Journal of The Royal Society Interface.