Kazuki Saito

发表

PRIMe: A Web Site That Assembles Tools for Metabolomics and Transcriptomics

Tetsuya Sakurai, Kazuo Shinozaki, Kenji Akiyama, 2008, Silico Biol..

Assessing land-use and carbon stock in slash-and-burn ecosystems in tropical mountain of Laos based on time-series satellite images

Yoshio Inoue, Albert Olioso, Kazuki Saito, 2010, Int. J. Appl. Earth Obs. Geoinformation.

The prediction of local modular structures in a co-expression network based on gene expression datasets.

Hideyuki Suzuki, Kazuki Saito, Yoshiyuki Ogata, 2009, Genome informatics. International Conference on Genome Informatics.

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach

Masanori Arita, Kazuki Saito, Henning Redestig, 2011, BMC Systems Biology.

Exploring molecular backgrounds of quality traits in rice by predictive models based on high-coverage metabolomics

Akira Oikawa, Makoto Kobayashi, Masanori Arita, 2011, BMC Systems Biology.

On-farm testing of a nutrient management decision-support tool for rice in the Senegal River valley

Kazuki Saito, Salif Diack, Ibnou Dieng, 2015, Comput. Electron. Agric..

Publisher Correction: A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms

Yutaka Yamada, Kazuki Saito, Masanori Arita, 2019, Nature Methods.

KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data

Hideyuki Suzuki, Kazuki Saito, Yoshiyuki Ogata, 2010, Nucleic Acids Res..

Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model

Masami Y. Hirai, Kazuki Saito, Shigehiko Kanaya, 2007, BMC Bioinformatics.

ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis

Kengo Kinoshita, Kenta Nakai, Shinpei Hayashi, 2006, Nucleic Acids Res..

A local minimum stagnation avoidance in design of CSD coefficient FIR filters by adding Gaussian function

Kenji Suyama, Kazuki Saito, 2013, 2013 Asia-Pacific Signal and Information Processing Association Annual Summit and Conference.

A new era in plant functional genomics

Kazuki Saito, Amit Rai, Mami Yamazaki, 2019, Current Opinion in Systems Biology.

Proposed quantitative and alphanumeric metabolite identification metrics

Ute Roessner, Kazuki Saito, Basil J. Nikolau, 2014, Metabolomics.

Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana

Makoto Kobayashi, Masanori Arita, Takayuki Tohge, 2007, BMC Systems Biology.

Assessing the land-use change and carbon sink capacity in the slash-and-burn agriculture region of northern Laos

Yoshio Inoue, Kazuki Saito, Takeshi Horie, 2005, Proceedings. 2005 IEEE International Geoscience and Remote Sensing Symposium, 2005. IGARSS '05..

Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic processes

Mark Stitt, Kazuki Saito, Henning Redestig, 2011, BMC Systems Biology.

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: a plant-specific MS/MS-based data resource and database.

Yutaka Yamada, Yuji Sawada, Kenji Akiyama, 2012, Phytochemistry.

Design of CSD Coefficient FIR Filters Using PSO with Penalty Function

Kenji Suyama, Kazuki Saito, 2015, IEICE Trans. Fundam. Electron. Commun. Comput. Sci..

Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis

Masanori Arita, Kazuki Saito, Henning Redestig, 2010, BMC Bioinformatics.

Capillary electrophoresis-mass spectrometry reveals the distribution of carbon metabolites during nitrogen starvation in Synechocystis sp. PCC 6803.

Akira Oikawa, Kazuki Saito, Masami Yokota Hirai, 2014, Environmental microbiology.

Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-l-serine as a general regulator of gene expression in response to sulfur nutrition.

Kazuki Saito, Masami Yokota Hirai, Toru Fujiwara, 2003, The Plant journal : for cell and molecular biology.

Recent advances of metabolomics in plant biotechnology

Kazuki Saito, Yozo Okazaki, Kazuki Saito, 2011, Plant Biotechnology Reports.

Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains

Jae-Hoon Kim, Kazuki Saito, Shigeyuki Yokoyama, 2002, Cell.

KNApSAcK family databases: integrated metabolite-plant species databases for multifaceted plant research.

Kazuki Saito, Shigehiko Kanaya, Farit Mochamad Afendi, 2012, Plant & cell physiology.

Towards a better understanding of biophysical determinants of yield gaps and the potential for expansion of the rice area in Africa

Kazuki Saito, M. C. S. Wopereis, Andrew Nelson, 2013 .

Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism

Kazuki Saito, Fumio Matsuda, Yozo Okazaki, 2014, The Plant journal : for cell and molecular biology.

Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response.

Takeshi Mizuno, Kazuki Saito, Hitoshi Sakakibara, 2009, Plant & cell physiology.

A lipidome atlas in MS-DIAL 4

Yutaka Yamada, Kazuki Saito, Masanori Arita, 2020, Nature Biotechnology.

Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics.

Kazuo Shinozaki, Kazuki Saito, Yoshiyuki Ogata, 2009, The Plant journal : for cell and molecular biology.

Metabolomics for unknown plant metabolites

Kazuki Saito, Ryo Nakabayashi, Kazuki Saito, 2013, Analytical and Bioanalytical Chemistry.

Mechanistic Studies on Three 2-Oxoglutarate-dependent Oxygenases of Flavonoid Biosynthesis

Kazuki Saito, Christopher J Schofield, Mami Yamazaki, 2004, Journal of Biological Chemistry.

Arabidopsis SLIM1 Is a Central Transcriptional Regulator of Plant Sulfur Response and Metabolism[W][OA]

Takayuki Tohge, Kazuki Saito, Yumiko Nakamura, 2006, The Plant Cell Online.

Integrative Analysis of Secondary Metabolism and Transcript Regulation in Arabidopsis Thaliana

Kazuki Saito, Fumio Matsuda, Fumio Matsuda, 2013 .

Mass Spectra-Based Framework for Automated Structural Elucidation of Metabolome Data to Explore Phytochemical Diversity

Yuji Sawada, Masami Y. Hirai, Kazuki Saito, 2011, Front. Plant Sci..

Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types.

Kazuki Saito, Tamas Dalmay, Kazuki Saito, 2009, The Plant journal : for cell and molecular biology.

Modern plant metabolomics: advanced natural product gene discoveries, improved technologies, and future prospects.

Kazuki Saito, Zhentian Lei, Lloyd W Sumner, 2015, Natural product reports.

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

Kazuo Shinozaki, Kazuki Saito, Fumio Matsuda, 2008, The Plant journal : for cell and molecular biology.

Rice-Arabidopsis FOX line screening with FT-NIR-based fingerprinting for GC-TOF/MS-based metabolite profiling

Kazuki Saito, Yumiko Nakamura, Miyako Kusano, 2010, Metabolomics.

Integrated omics approaches in plant systems biology.

Kazuki Saito, Henning Redestig, Masanori Arita, 2009, Current opinion in chemical biology.

A New Member of Plant CS-lyases

Kazuki Saito, Patrik R. Jones, M. Awazuhara, 2003, The Journal of Biological Chemistry.

Third DWF1 paralog in Solanaceae, sterol Δ24-isomerase, branches withanolide biosynthesis from the general phytosterol pathway

Kazuki Saito, Atsushi Fukushima, Tetsuya Mori, 2018, Proceedings of the National Academy of Sciences.

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access.

Kazuo Shinozaki, Takeshi Mizuno, Kenji Akiyama, 2008 .

Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice.

Kazuki Saito, Atsushi Fukushima, Miyako Kusano, 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae

Mark Stitt, Takayuki Tohge, Kazuki Saito, 2016, Nature Communications.

Metabolomic approaches toward understanding nitrogen metabolism in plants.

Kazuki Saito, Henning Redestig, Atsushi Fukushima, 2011, Journal of experimental botany.

Causes of yield stagnation in irrigated lowland rice systems in the Senegal River Valley: Application of dichotomous decision tree analysis

Kazuki Saito, A. Tanaka, Atsuko Tanaka, 2015 .

A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms

Yutaka Yamada, Kazuki Saito, Masanori Arita, 2019, Nature Methods.

Heavy metal tolerance of transgenic tobacco plants over-expressing cysteine synthase

Kazuki Saito, Masaaki Noji, M. Noji, 2004, Biotechnology Letters.

Stylosanthes guianensis as a short-term fallow crop for improving upland rice productivity in northern Laos

Kazuki Saito, Tatsuhiko Shiraiwa, Bruce A. Linquist, 2006 .

LipidBlast Templates As Flexible Tools for Creating New in-Silico Tandem Mass Spectral Libraries

Kazuki Saito, Oliver Fiehn, Tobias Kind, 2014, Analytical chemistry.

Pause-and-Stop: The Effects of Osmotic Stress on Cell Proliferation during Early Leaf Development in Arabidopsis and a Role for Ethylene Signaling in Cell Cycle Arrest[W]

Akira Oikawa, Frederik Coppens, Dirk Inzé, 2011, Plant Cell.

Can sub-Saharan Africa feed itself?

Kazuki Saito, Lieven Claessens, Regis Chikowo, 2016, Proceedings of the National Academy of Sciences.

Evaluation of sixteen reference evapotranspiration methods under sahelian conditions in the Senegal River Valley

Kazuki Saito, Suat Irmak, Bertrand Muller, 2015 .

Omics data input for metabolic modeling.

Kazuki Saito, A. Rai, Amit Rai, 2016, Current opinion in biotechnology.

Regulation of sulfate transport and synthesis of sulfur-containing amino acids.

Kazuki Saito, 2000 .

Farmers' knowledge of soils in relation to cropping practices: A case study of farmers in upland rice based slash-and-burn systems of northern Laos

Kazuki Saito, Tatsuhiko Shiraiwa, Bruce A. Linquist, 2006 .

Recommendations for Reporting Metabolite Data[W]

Mark Stitt, Takayuki Tohge, Kazuki Saito, 2011, Plant Cell.

Reflectance characteristics of major land surfaces in slash‐and‐burn ecosystems in Laos

Albert Olioso, Kazuki Saito, Yoshio Inoue, 2008 .

Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones.

Takashi Asano, Yoshiyuki Sakaki, Kazuki Saito, 2013, Plant & cell physiology.

Response of traditional and improved upland rice cultivars to N and P fertilizer in northern Laos

Kazuki Saito, Tatsuhiko Shiraiwa, Bruce A. Linquist, 2006 .

Phytochemical genomics--a new trend.

Kazuki Saito, Kazuki Saito, K. Saito, 2013, Current opinion in plant biology.

Statistical indices for simultaneous large-scale metabolite detections for a single NMR spectrum.

Kazuo Shinozaki, Kenji Akiyama, Eisuke Chikayama, 2010, Analytical chemistry.

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light.

Takayuki Tohge, Kazuki Saito, Fumio Matsuda, 2011, The Plant journal : for cell and molecular biology.

Arabidopsis bile acid:sodium symporter family protein 5 is involved in methionine-derived glucosinolate biosynthesis.

Yuji Sawada, Kazuki Saito, Masami Yokota Hirai, 2009, Plant & cell physiology.

KAGIANA: An Excel-Based Tool for Retrieving Summary Information on Arabidopsis Genes

Kazuki Saito, Yoshiyuki Ogata, Nozomu Sakurai, 2008, Plant & cell physiology.

Quinolizidine alkaloid biosynthesis: recent advances and future prospects

Kazuki Saito, Mami Yamazaki, Kazuki Saito, 2012, Front. Plant Sci..

Integrating genomics and metabolomics for engineering plant metabolic pathways.

Kazuki Saito, Kirsi-Marja Oksman-Caldentey, Kazuki Saito, 2005, Current opinion in biotechnology.

A proposed framework for the description of plant metabolomics experiments and their results

Nigel W. Hardy, Kazuki Saito, Oliver Fiehn, 2004, Nature Biotechnology.

Landscape of the lipidome and transcriptome under heat stress in Arabidopsis thaliana

Kazuo Shinozaki, Kazuki Saito, Yozo Okazaki, 2015, Scientific Reports.

Transcriptome data modeling for targeted plant metabolic engineering.

Kazuki Saito, Atsushi Fukushima, Kazuki Saito, 2013, Current opinion in biotechnology.

A stress-inducible sulphotransferase sulphonates salicylic acid and confers pathogen resistance in Arabidopsis.

Akira Oikawa, Kazuki Saito, Jiafu Jiang, 2010, Plant, cell & environment.

Phytochemical genomics in Arabidopsis thaliana: A case study for functional identification of flavonoid biosynthesis genes

Takayuki Tohge, Kazuki Saito, Takayuki Tohge, 2007 .

Recent advances in the biosynthesis and accumulation of anthocyanins.

Kazuki Saito, Mami Yamazaki, Kazuki Saito, 2003, Natural product reports.

Yield response of indica and tropical japonica genotypes to soil fertility conditions under rainfed uplands in northern Laos

Kazuki Saito, Yoshio Inoue, Yoshiyuki Kiyono, 2009 .

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access.

Kazuo Shinozaki, Takeshi Mizuno, Kenji Akiyama, 2008, The Plant journal : for cell and molecular biology.

Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis1[W][OPEN]

Takayuki Tohge, Kazuki Saito, Eve Syrkin Wurtele, 2014, Plant Physiology.

Assessment of Metabolome Annotation Quality: A Method for Evaluating the False Discovery Rate of Elemental Composition Searches

Akira Oikawa, Kazuki Saito, Masami Yokota Hirai, 2009, PloS one.

Tissue-specific transcriptome analysis reveals cell wall metabolism, flavonol biosynthesis and defense responses are activated in the endosperm of germinating Arabidopsis thaliana seeds.

Kazuki Saito, Tetsuro Toyoda, Yuji Kamiya, 2012, Plant & cell physiology.

Cryopreservation and metabolic profiling analysis of Arabidopsis T87 suspension-cultured cells.

Kazuki Saito, Nozomu Sakurai, Koh Aoki, 2008, Cryo letters.

Toward better annotation in plant metabolomics: isolation and structure elucidation of 36 specialized metabolites from Oryza sativa (rice) by using MS/MS and NMR analyses

Kazuki Saito, Satoshi Takamatsu, Jun Kikuchi, 2013, Metabolomics.

Ectopic expression of myo-inositol 3-phosphate synthase induces a wide range of metabolic changes and confers salt tolerance in rice.

Akira Oikawa, Kazuki Saito, Masami Yokota Hirai, 2015, Plant science : an international journal of experimental plant biology.

Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software.

Kazuki Saito, Masanori Arita, Oliver Fiehn, 2016, Analytical chemistry.

Metabolomics of a Single Vacuole Reveals Metabolic Dynamism in an Alga Chara australis1[W][OA]

Akira Oikawa, Kazuki Saito, Tetsuro Mimura, 2011, Plant Physiology.

Perspective: functional genomics towards new biotechnology in medicinal plants

Kazuki Saito, Mami Yamazaki, A. Rai, 2018, Plant Biotechnology Reports.

AtMetExpress Development: A Phytochemical Atlas of Arabidopsis Development[W][OA]

Kenji Akiyama, Yukihisa Shimada, Masami Y. Hirai, 2009, Plant Physiology.

Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana.

Takayuki Tohge, Kazuki Saito, Miyako Kusano, 2009, Phytochemistry.

De Novo Deep Transcriptome Analysis of Medicinal Plants for Gene Discovery in Biosynthesis of Plant Natural Products.

Kazuki Saito, Mami Yamazaki, M. Yamazaki, 2016, Methods in enzymology.

Dual-mode antenna for on-/off-body communications (10 MHz/2.45 GHz)

Kazuki Saito, Koichi Ito, Zhengyi Li, 2012 .

RiceAtlas, a spatial database of global rice calendars and production

Mirco Boschetti, Kazuki Saito, Alice G. Laborte, 2017, Scientific Data.

Functional genomics for plant natural product biosynthesis.

Kazuki Saito, Kazuki Saito, K. Yonekura-Sakakibara, 2009, Natural product reports.

Omics-based approaches to methionine side chain elongation in Arabidopsis: characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase.

Yuji Sawada, Kazuki Saito, Masami Yokota Hirai, 2009, Plant & cell physiology.

Exploring matrix effects and quantification performance in metabolomics experiments using artificial biological gradients.

Kazuki Saito, Henning Redestig, Miyako Kusano, 2011, Analytical chemistry.

PRIMe Update: Innovative Content for Plant Metabolomics and Integration of Gene Expression and Metabolite Accumulation

Yutaka Yamada, Kazuo Shinozaki, Yuji Sawada, 2013, Plant & cell physiology.

HEAT INDUCIBLE LIPASE1 Remodels Chloroplastic Monogalactosyldiacylglycerol by Liberating α-Linolenic Acid in Arabidopsis Leaves under Heat Stress[OPEN]

Kazuo Shinozaki, Kazuki Saito, Atsushi Fukushima, 2018, Plant Cell.

Structural insights into eRF3 and stop codon recognition by eRF1.

Kazuki Saito, Adam Round, Dmitri I Svergun, 2009, Genes & development.

LC/PDA/ESI-MS Profiling and Radical Scavenging Activity of Anthocyanins in Various Berries

Kazuki Saito, Ippei Tanaka, Mami Yamazaki, 2004, Journal of biomedicine & biotechnology.

Metabolic Pathways Involved in Cold Acclimation Identified by Integrated Analysis of Metabolites and Transcripts Regulated by DREB1A and DREB2A1[W][OA]

Kazuo Shinozaki, Kazuki Saito, Daisuke Shibata, 2009, Plant Physiology.

Biosynthesis of Camptothecin. In Silico and in Vivo Tracer Study from [1-13C]Glucose1

Kazuki Saito, Masanori Arita, Mami Yamazaki, 2004, Plant Physiology.

General method for preparing altrosides from 2,3-manno-epoxides and its application to synthesis of alternative β-cyclodextrin with an altroside as the constituent of macrocyclic structure

Kazuki Saito, Yasuyoshi Nogami, Kahee Fujita, 1994 .

Predicting chronosequential changes in carbon stocks of pachymorph bamboo communities in slash-and-burn agricultural fallow, northern Lao People’s Democratic Republic

Kazuki Saito, Yoshio Inoue, Yoshiyuki Kiyono, 2007, Journal of Forest Research.