P. Skene

发表

An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites

Steven Henikoff, S. Henikoff, Peter J. Skene, 2016, bioRxiv.

Global analysis of the methyl-CpG binding protein MeCP2

Peter J. Skene, P. Skene, 2010 .

CpG islands influence chromatin structure via the CpG-binding protein Cfp1

Robert S. Illingworth, A. Bird, D. Turner, 2010, Nature.

Persistent serum protein signatures define an inflammatory subcategory of long COVID

T. Torgerson, E. Coffey, S. Vasaikar, 2023, Nature communications.

Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq

Lucas T. Graybuck, T. Torgerson, Peter J. Skene, 2021, eLife.

TEA-seq: a trimodal assay for integrated single cell measurement of transcription, epitopes, and chromatin accessibility

Lucas T. Graybuck, T. Torgerson, Peter J. Skene, 2020, bioRxiv.

TEA-seq: a trimodal assay for integrated single cell measurement of transcription, epitopes, and chromatin accessibility

Lucas T. Graybuck, T. Torgerson, Peter J. Skene, 2020, bioRxiv.

Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells.

Adrian Bird, Robert Andrews, Robert S. Illingworth, 2012, Genes & development.

A comprehensive platform for analyzing longitudinal multi-omics data

Lucas T. Graybuck, T. Torgerson, S. Vasaikar, 2023, Nature Communications.

A comprehensive platform for analyzing longitudinal multi-omics data

Lucas T. Graybuck, T. Torgerson, S. Vasaikar, 2022, bioRxiv.

Targeted in situ genome-wide profiling with high efficiency for low cell numbers

S. Henikoff, J. Henikoff, Peter J. Skene, 2018, Nature Protocols.

Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state.

Robert S. Illingworth, A. Bird, D. Turner, 2010, Molecular cell.

Histone variants in pluripotency and disease

S. Henikoff, Peter J. Skene, P. Skene, 2013, Development.

Histones push the envelope

S. Henikoff, Peter J. Skene, P. Skene, 2014, Nature Structural &Molecular Biology.

BarWare: efficient software tools for barcoded single-cell genomics

Lucas T. Graybuck, Peter J. Skene, Elliott Swanson, 2022, BMC Bioinformatics.

A simple method for generating high-resolution maps of genome-wide protein binding

Steven Henikoff, S. Henikoff, Peter J. Skene, 2015, eLife.

The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1

Steven Henikoff, Mark Groudine, S. Henikoff, 2014, eLife.

DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression

S. Henikoff, S. Tapscott, Peter J. Skene, 2019, Cell reports.

Chromatin roadblocks to reprogramming 50 years on

S. Henikoff, Peter J. Skene, P. Skene, 2012, BMC Biology.

A Temporal Threshold for Formaldehyde Crosslinking and Fixation

A. Bird, A. Deaton, Peter J. Skene, 2009, PloS one.

Explorer Cfp 1 integrates both CpG content and gene activity for accurate H 3 K 4 me 3 deposition in embryonic stem cells

Robert S. Illingworth, A. Bird, R. Andrews, 2017 .

Cfp 1 integrates both CpG content and gene activity for accurate H 3 K 4 me 3 deposition in embryonic stem cells

Robert S. Illingworth, A. Bird, R. Andrews, 2012 .

MOCHA: advanced statistical modeling of scATAC-seq data enables functional genomic inference in large human disease cohorts

Samir Rachid Zaim, T. Torgerson, M. McElrath, 2023, bioRxiv.

Multimodal analysis for human ex vivo studies shows extensive molecular changes from delays in blood processing

J. Goldy, H. Bolouri, T. Torgerson, 2020, iScience.

Multi-omic Single-cell Atlas Reveals Broad Ex Vivo Effects on Human Immunobiology

J. Goldy, H. Bolouri, T. Torgerson, 2020, bioRxiv.

Transcriptional regulatory networks underlying gene expression changes in Huntington's disease

Seth A Ament, Nathan D Price, Nitin S Baliga, 2018, Molecular systems biology.

Longitudinal immune dynamics of mild COVID-19 define signatures of recovery and persistence

Lucas T. Graybuck, Olivia Fong, T. Torgerson, 2021, bioRxiv.

Title: Longitudinal immune dynamics of mild COVID-19 define signatures of recovery and persistence Authors:

Lucas T. Graybuck, T. Torgerson, M. McElrath, 2021 .

Distinct Heterogeneity in the Naive T cell Compartments of Children and Adults

Lucas T. Graybuck, E. Wherry, T. Torgerson, 2022, bioRxiv.

CpG island chromatin is shaped by recruitment of ZF-CxxC proteins.

J. Thomson, Peter J. Skene, Neil P. Blackledge, 2013, Cold Spring Harbor perspectives in biology.

Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells.

Robert S. Illingworth, A. Bird, R. Andrews, 2012, Genes & development.

CpG islands influence chromatin structure via the CpG-binding protein Cfp1

Robert S. Illingworth, A. Bird, D. Turner, 2010, Nature.

Title: Longitudinal immune dynamics of mild COVID-19 define signatures of recovery and persistence Authors:

Lucas T. Graybuck, T. Torgerson, M. McElrath, 2021 .

Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment

T. Torgerson, A. Greenplate, S. Vasaikar, 2023, Nature Immunology.

Genome-scale transcriptional regulatory network models for the mouse and human striatum predict roles for SMAD3 and other transcription factors in Huntington’s disease

L. Hood, N. Baliga, N. Price, 2016, bioRxiv.

CUT&RUN: Targeted in situ genome-wide profiling with high efficiency for low cell numbers

P. Skene, Steven Henikoff, 2017, bioRxiv.

Mechanism of Initiation Site Selection Promoted by the Human Rhinovirus 2 Internal Ribosome Entry Site

R. Jackson, A. Kaminski, T. Pöyry, 2010, Journal of Virology.

Persistent serum protein signatures define an inflammatory subset of long COVID

T. Torgerson, M. McElrath, E. Newell, 2022, bioRxiv.

CpG island chromatin is shaped by recruitment of ZF-CxxC proteins.

J. Thomson, Neil P. Blackledge, P. Skene, 2013, Cold Spring Harbor perspectives in biology.

Edinburgh Research Explorer Cpg Islands Influence Chromatin Structure via the Cpg-binding Protein Cfp1 Cpg Islands Influence Chromatin Structure via the Cpg-binding Protein Cfp1 Europe Pmc Funders Group

Robert S. Illingworth, J. Selfridge, Shaun Webb, 2022 .

MOCHA’s advanced statistical modeling of scATAC-seq data enables functional genomic inference in large human cohorts

Imran McGrath, M. Pebworth, Julie L. Czartoski, 2024, Nature communications.

Provide Proactive Reproducible Analysis Transparency with Every Publication

Lucas T. Graybuck, A. Goldrath, Z. Thomson, 2024, 2408.09103.