Bill Andreopoulos

发表

Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

B. Andreopoulos, K. Barry, R. D. de Vries, 2019, Microbiology Resource Announcements.

Widespread adenine N6-methylation of active genes in fungi

Robert J. Schmitz, Adam J. Bewick, A. Visel, 2017, Nature Genetics.

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Richard D. Hayes, D. Hibbett, B. Henrissat, 2020, Nature Communications.

Large-scale genome sequencing of fungi provides insights into the early evolution of symbiotic traits.

Richard D. Hayes, Elodie Drula, B. Andreopoulos, 2020 .

Next generation sequencing data of a defined microbial mock community

Jan-Fang Cheng, Hans-Peter Klenk, Alex Copeland, 2016, Scientific Data.

Unraveling Protein Networks with Power Graph Analysis

Michael Schroeder, Bill Andreopoulos, Loïc Royer, 2008, PLoS Comput. Biol..

Phage-specific metabolic reprogramming of virocells

B. Andreopoulos, J. Adkins, M. Sullivan, 2020, The ISME Journal.

Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.

Richard D. Hayes, Jennifer H. Wisecaver, Mojgan Amirebrahimi, 2021, The New phytologist.

Diversity of genomic adaptations to post-fire environment in Pezizales fungi points to a crosstalk between charcoal tolerance and sexual development.

B. Henrissat, Elodie Drula, I. Grigoriev, 2022, The New phytologist.

Bi-level clustering of mixed categorical and numerical biomedical data

Xiaogang Wang, Aijun An, Bill Andreopoulos, 2006, Int. J. Data Min. Bioinform..

Translation and Rotation Invariant Mining of Frequent Trajectories: Application to Protein Unfolding Pathways

Xiaogang Wang, Alexander Andreopoulos, Aijun An, 2007, PAKDD Workshops.

Triangle network motifs predict complexes by complementing high-error interactomes with structural information

Michael Schroeder, Christof Winter, Dirk Labudde, 2009, BMC Bioinformatics.

A 2-D 8 Reasoning over networks with BioRevise and PowerGraphs

Loïc Royer, M. Schroeder, M. Reimann, 2008 .

Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature

Dimitris Anastassiou, Bill Andreopoulos, D. Anastassiou, 2012, Cancer informatics.

Integration of Genomic, Proteomic and Biomedical Information on the Semantic Web

Xiangji Huang, Aijun An, Dirk Labudde, 2008, ER Workshops.

Promoting Diversity in Top Hits for Biomedical Passage Retrieval

Qinmin Hu, Xiangji Huang, Aijun An, 2009 .

101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens

A. Salamov, Y. Yoshinaga, B. Henrissat, 2020, Studies in mycology.

Phage-specific metabolic reprogramming of virocells

B. Andreopoulos, J. Adkins, M. Sullivan, 2020, The ISME Journal.

Leveraging single-cell genomics to expand the fungal tree of life

A. Salamov, B. Henrissat, B. Andreopoulos, 2018, Nature Microbiology.

Next generation sequencing data of a defined microbial mock community

H. Klenk, R. M. Bowers, T. Woyke, 2016, Scientific Data.

Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613

B. Henrissat, B. Andreopoulos, J. Spatafora, 2019, Applied Microbiology and Biotechnology.

A roadmap of clustering algorithms: finding a match for a biomedical application

Xiaogang Wang, Michael Schroeder, Aijun An, 2008, Briefings Bioinform..

Genomic innovation and horizontal gene transfer shaped plant colonization and biomass degradation strategies of a globally prevalent fungal pathogen

M. Koriabine, B. Henrissat, Elodie Drula, 2022, bioRxiv.

Clustering mixed numerical and low quality categorical data: significance metrics on a yeast example

Xiaogang Wang, Aijun An, Bill Andreopoulos, 2005, IQIS '05.

Efficient layered density-based clustering of categorical data

Xiaogang Wang, Aijun An, Dirk Labudde, 2009, J. Biomed. Informatics.

Hierarchical Density-Based Clustering of Categorical Data and a Simplification

Xiaogang Wang, Aijun An, Bill Andreopoulos, 2007, PAKDD.

Clustering Categorical Data

Bill Andreopoulos, B. Andreopoulos, Bill Andreopoulos, 2013, Data Clustering: Algorithms and Applications.

Gene Expression Specification

Bill Andreopoulos, B. Andreopoulos, Bill Andreopoulos, 2003 .

Clustering by common friends finds locally significant proteins mediating modules

Xiaogang Wang, M. Schroeder, Aijun An, 2007 .

Finding molecular complexes through multiple layer clustering of protein interaction networks

Xiaogang Wang, Xiangji Huang, Aijun An, 2007, Int. J. Bioinform. Res. Appl..

Secondary metabolism drives ecological breadth in the Xylariaceae

Jennifer H. Wisecaver, Mojgan Amirebrahimi, Juying Yan, 2021, bioRxiv.

Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.

K. Barry, R. Riley, D. Natvig, 2023, Molecular phylogenetics and evolution.

Satisficing the Conflicting Software Qualities of Maintainability and Performance at the Source Code Level

Bill Andreopoulos, 2004, WER.

Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

M. Koriabine, B. Henrissat, Elodie Drula, 2023, Nature Microbiology.

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy

Fabien L. Gandon, Dimitra Alexopoulou, Michael Schroeder, 2009, BMC Bioinformatics.

Clustering Categorical Data

Bill Andreopoulos, 2013, Data Clustering: Algorithms and Applications.

Word Sense Disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering

Dimitra Alexopoulou, Michael Schroeder, Bill Andreopoulos, 2008, Int. J. Data Min. Bioinform..

Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations

A. Salamov, A. Kohler, A. Lipzen, 2024, Cell Genomics.

Efficient unfolding pattern recognition in single molecule force spectroscopy data

Dirk Labudde, Bill Andreopoulos, D. Labudde, 2011, Algorithms for Molecular Biology.