Derrick W. Crook

发表

Detection of Mixed Infection from Bacterial Whole Genome Sequence Data Allows Assessment of Its Role in Clostridium difficile Transmission

David Griffiths, A. Sarah Walker, Daniel J. Wilson, 2013, PLoS Comput. Biol..

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis

David A. Clifton, Farah E. Shamout, A. Sarah Walker, 2019, Bioinform..

Machine learning for the prediction of antibacterial susceptibility in Mycobacterium tuberculosis

David A. Clifton, Katherine E. Niehaus, Derrick W. Crook, 2014, IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI).

Application of machine learning techniques to tuberculosis drug resistance analysis

David A. Clifton, Yang Yang, A. Sarah Walker, 2018, Bioinform..

Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data

David A. Clifton, Yang Yang, Zamin Iqbal, 2017, Bioinform..

Intelligent Electronic Health Systems

David A. Clifton, Lei A. Clifton, Peter J. Watkinson, 2018, TeleMedicine and Electronic Medicine.

Amplification-Free Detection of Viruses in Minutes using Single-Particle Imaging and Machine Learning

Nicole Stoesser, Cyril Favard, Delphine Muriaux, 2021 .

An end-to-end heterogeneous graph attention network for Mycobacterium tuberculosis drug-resistance prediction

David A. Clifton, Samaneh Kouchaki, Derrick W. Crook, 2021, Briefings Bioinform..

Evaluation of Whole-Genome Sequencing for Mycobacterial Species Identification and Drug Susceptibility Testing in a Clinical Setting: a Large-Scale Prospective Assessment of Performance against Line Probe Assays and Phenotyping

Phelim Bradley, Zamin Iqbal, Derrick W. Crook, 2017, Journal of Clinical Microbiology.

Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

Peter Donnelly, Zamin Iqbal, Richard G. Everitt, 2012, Proceedings of the National Academy of Sciences.

Real-time analysis of nanopore-based metagenomic sequencing from orthopaedic device infection

Jeremy Swann, David W. Eyre, Derrick W. Crook, 2017, bioRxiv.

Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis

Phelim Bradley, Gil McVean, Zamin Iqbal, 2015, bioRxiv.

Dynamics of acquisition and loss of carriage of Staphylococcus aureus strains in the community: The effect of clonal complex☆☆☆

Derrick W. Crook, A. Sarah Walker, David Mant, 2014, The Journal of infection.

Identifying lineage effects when controlling for population structure improves power in bacterial association studies

David A. Clifton, Gil McVean, Zamin Iqbal, 2015, Nature Microbiology.

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples

Phelim Bradley, Zamin Iqbal, Matthew Loose, 2016 .

Identifying Mixed Mycobacterium tuberculosis Infection and Laboratory Cross-Contamination during Mycobacterial Sequencing Programs

Derrick W. Crook, A. Sarah Walker, Priti Rathod, 2018, Journal of Clinical Microbiology.

NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline

Fan Yang-Turner, Derrick W. Crook, D. Crook, 2020, Nucleic Acids Res..

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches

Zamin Iqbal, Sophie George, Anna E. Sheppard, 2017, Microbial genomics.

Treatment of First Recurrence of Clostridium difficile Infection: Fidaxomicin Versus Vancomycin

Derrick W. Crook, Mark A. Miller, T. Louie, 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples

A. Sarah Walker, Derrick W. Crook, Katie Jeffery, 2019, Journal of Clinical Microbiology.

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

Anna E. Sheppard, A. Sarah Walker, Daniel J. Wilson, 2015, Antimicrobial Agents and Chemotherapy.

A Quantitative Evaluation of MIRU-VNTR Typing Against Whole-Genome Sequencing for Identifying Mycobacterium tuberculosis Transmission: A Prospective Observational Cohort Study

Derrick W. Crook, Priti Rathod, David H. Wyllie, 2018, bioRxiv.

Transforming clinical microbiology with bacterial genome sequencing

Daniel J. Wilson, Xavier Didelot, Derrick W. Crook, 2012, Nature Reviews Genetics.

Transferable Antibiotic Resistance Elements in Haemophilus influenzae Share a Common Evolutionary Origin with a Diverse Family of Syntenic Genomic Islands

Derrick W. Crook, Thomas J. Inzana, T. Peto, 2004, Journal of bacteriology.

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

Liam P. Shaw, Sophie George, Jeremy Swann, 2019, bioRxiv.

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

Liam P. Shaw, A. Sarah Walker, Nicole Stoesser, 2019, bioRxiv.

High Confidence Prediction of Essential Genes in Burkholderia Cenocepacia

Christian von Mering, Leo Eberl, Derrick W. Crook, 2012, PloS one.

Characterisation of Clostridium difficile Hospital Ward–Based Transmission Using Extensive Epidemiological Data and Molecular Typing

A. Sarah Walker, David W. Eyre, Derrick W. Crook, 2012, PLoS medicine.

WGS to predict antibiotic MICs for Neisseria gonorrhoeae

Yonatan H. Grad, John Paul, David W. Eyre, 2017, The Journal of antimicrobial chemotherapy.

Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples

Phelim Bradley, Zamin Iqbal, Matthew Loose, 2016, Journal of Clinical Microbiology.

A cluster of multidrug-resistant Mycobacterium tuberculosis among patients arriving in Europe from the Horn of Africa: a molecular epidemiological study

Thomas R Rogers, Stefan Niemann, Enos Bernasconi, 2018, The Lancet. Infectious diseases.

Within-Host Evolution of Staphylococcus aureus during Asymptomatic Carriage

Richard G. Everitt, Daniel J. Wilson, Xavier Didelot, 2013, PloS one.