Jakub Rydzewski

Conformational Sampling of a Biomolecular Rugged Energy Landscape

Jakub Rydzewski, Rafal Jakubowski, Giuseppe Nicosia, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Promoting transparency and reproducibility in enhanced molecular simulations

Jakub Rydzewski, Toni Giorgino, Massimiliano Bonomi, 2019, Nature Methods.

maze: Heterogeneous ligand unbinding along transient protein tunnels

Jakub Rydzewski, J. Rydzewski, 2019, Comput. Phys. Commun..

Inferring pathological states in cortical neuron microcircuits.

Jakub Rydzewski, Giuseppe Nicosia, Wieslaw Nowak, 2015, Journal of theoretical biology.

Multiscale reweighted stochastic embedding (MRSE): Deep learning of collective variables for enhanced sampling

Jakub Rydzewski, Omar Valsson, 2020 .