Maurizio Zazzi

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A Comparison of Three Computational Modelling Methods for the Prediction of Virological Response to Combination Hiv Therapy Author's Personal Copy

Brendan Larder, Dechao Wang, Lidia Ruiz, 2022 .

History-alignment models for bias-aware prediction of virological response to HIV combination therapy

Thomas Lengauer, Michal Rosen-Zvi, Jasmina Bogojeska, 2012, AISTATS.

Combining Kernel and Model Based Learning for HIV Therapy Selection

Finale Doshi-Velez, Volker Roth, Jasmina Bogojeska, 2017, CRI.

Predicting human-immunodeficiency virus rebound after therapy initiation/switch using genetic, laboratory, and clinical data

Giuseppe Tradigo, Mattia C. F. Prosperi, Maurizio Zazzi, 2016, BCB.

Statistical Comparison of Machine Learning Techniques for Treatment Optimisation of Drug-Resistant HIV-1

Giovanni Ulivi, Mattia C. F. Prosperi, Maurizio Zazzi, 2007, Twentieth IEEE International Symposium on Computer-Based Medical Systems (CBMS'07).

Preferential Mixture-of-Experts: Interpretable Models that Rely on Human Expertise as much as Possible pdf

Javier Zazo, Finale Doshi-Velez, Melanie F. Pradier, 2021, ArXiv.

RegaDB: community-driven data management and analysis for infectious diseases

Jean Ruelle, Peter M. A. Sloot, Stefan Wesner, 2013, Bioinform..

Regional Tree Regularization for Interpretability in Black Box Models pdf

Mike Wu, Finale Doshi-Velez, Volker Roth, 2019, ArXiv.

Regional Tree Regularization for Interpretability in Deep Neural Networks

Mike Wu, Finale Doshi-Velez, Volker Roth, 2020, AAAI.

2018 update to the HIV-TRePS system: the development of new computational models to predict HIV treatment outcomes, with or without a genotype, with enhanced usability for low-income settings

Dechao Wang, Shanmugam Saravanan, John Baxter, 2018, The Journal of antimicrobial chemotherapy.

Improved HIV-1 coreceptor usage prediction using Indexed BLAST-based local Smoothing Kernel methods, rules and decision trees with grid multiple statistical validation,

Giovanni Ulivi, Alessandro Micarelli, Maurizio Zazzi, 2007 .

Selecting anti-HIV therapies based on a variety of genomic and clinical factors

Thomas Lengauer, Yardena Peres, Michal Rosen-Zvi, 2008, ISMB.

Beyond Sparsity: Tree Regularization of Deep Models for Interpretability

Mike Wu, Finale Doshi-Velez, Volker Roth, 2017, AAAI.

Bayesian network analysis of mutational pathways to DRV resistance

Kristof Theys, Kristel Van Laethem, Maurizio Zazzi, 2012 .

A Prognostic Model for Estimating the Time to Virologic Failure in HIV-1 Infected Patients Undergoing a New Combination Antiretroviral Therapy Regimen

et al., Andrea De Luca, Mattia C. F. Prosperi, 2011, BMC Medical Informatics Decis. Mak..

Structured Proportional Jump Processes

Elad Eban, Tal El-Hay, Omer Weissbrod, 2014, UAI.

Stochastic modelling of genotypic drug-resistance for human immunodeficiency virus towards long-term combination therapy optimization

Giovanni Ulivi, Andrea De Luca, Mattia C. F. Prosperi, 2009, Bioinform..

Computer-Aided Optimization of Combined Anti-Retroviral Therapy for HIV: New Drugs, New Drug Targets and Drug Resistance.

Maurizio Zazzi, Alessandro Cozzi-Lepri, M. Prosperi, 2016, Current HIV research.

Frequency and treatment-related predictors of thymidine-analogue mutation patterns in HIV-1 isolates after unsuccessful antiretroviral therapy.

Maurizio Zazzi, Andrea De Luca, M. Zazzi, 2006, The Journal of infectious diseases.

A novel methodology for large-scale phylogeny partition

Maurizio Zazzi, Marco Salemi, Massimo Ciccozzi, 2011, Nature communications.

Comparison of HIV-1 Genotypic Resistance Test Interpretation Systems in Predicting Virological Outcomes Over Time

Peter M. A. Sloot, Matthias Assel, Anne-Mieke Vandamme, 2010, PloS one.

Investigation of expert rule bases, logistic regression, and non-linear machine learning techniques for predicting response to antiretroviral treatment

Giovanni Ulivi, Michal Rosen-Zvi, Anne-Mieke Vandamme, 2008, Antiviral therapy.

Gln145Met/Leu Changes in Human Immunodeficiency Virus Type 1 Reverse Transcriptase Confer Resistance to Nucleoside and Nonnucleoside Analogs and Impair Virus Replication

Maurizio Zazzi, Fausto Baldanti, F. Baldanti, 2004, Antimicrobial Agents and Chemotherapy.

Advantages of predicted phenotypes and statistical learning models in inferring virological response to antiretroviral therapy from HIV genotype

Thomas Lengauer, Yardena Peres, Rolf Kaiser, 2008, Antiviral therapy.

Common Law applied to Treatment Decisions for Drug Resistant HIV

Giovanni Ulivi, Lidia Ruiz, Maurizio Zazzi, 2005 .

Transmission of HIV Drug Resistance and the Predicted Effect on Current First-line Regimens in Europe

Jan Albert, Kirsi Liitsola, Mario Poljak, 2015, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Identification and Structural Characterization of Novel Genetic Elements in the HIV-1 V3 Loop Regulating Coreceptor Usage

Stefano Alcaro, Giorgio Palù, Anna Artese, 2011, Antiviral therapy.

Efficacy of Antiretroviral Therapy Switch in HIV-Infected Patients: A 10-Year Analysis of the EuResist Cohort

Yardena Peres, Rolf Kaiser, Michal Rosen-Zvi, 2012, Intervirology.

Correction: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models

Rolf Kaiser, Michal Rosen-Zvi, Anne-Mieke Vandamme, 2011, PLoS ONE.

The EuResist Approach for Predicting Response to Anti HIV-1 Therapy

Joachim Büch, Thomas Lengauer, Yardena Peres, 2008 .

The Calculated Genetic Barrier for Antiretroviral Drug Resistance Substitutions Is Largely Similar for Different HIV-1 Subtypes

Klaus Korn, Anne-Mieke Vandamme, Sabine Yerly, 2006, Journal of acquired immune deficiency syndromes.

Clinical Evaluation of Rega 8: An Updated Genotypic Interpretation System That Significantly Predicts HIV-Therapy Response

Rolf Kaiser, Anne-Mieke Vandamme, Stijn Imbrechts, 2013, PloS one.

Comparative evaluation of three computerized algorithms for prediction of antiretroviral susceptibility from HIV type 1 genotype.

Giorgio Palù, Maurizio Zazzi, Robert W Shafer, 2004, The Journal of antimicrobial chemotherapy.

Evaluation of sofosbuvir activity and resistance profile against West Nile virus in vitro.

Maurizio Zazzi, Mattia Mori, Francesca Picarazzi, 2020, Antiviral research.

Prevalence of drug-resistant HIV-1 variants in untreated individuals in Europe: implications for clinical management.

Klaus Korn, Anne-Mieke Vandamme, Sabine Yerly, 2005, The Journal of infectious diseases.

The Development of Artificial Neural Networks to Predict Virological response to Combination HIV Therapy

Brendan Larder, Lidia Ruiz, Andrew Revell, 2007, Antiviral therapy.

Clinically Validated Genotype Analysis: Guiding Principles and Statistical Concerns

Victor DeGruttola, Vincent Calvez, Maurizio Zazzi, 2004, Antiviral therapy.

Using drug exposure for predicting drug resistance – A data-driven genotypic interpretation tool

Thomas Lengauer, Hauke Walter, Rolf Kaiser, 2017, PloS one.