Jamil Ahmad

Amjad Ali, Rehan Zafar Paracha, Ayesha Obaid, 2015, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis

C. Evelo, M. Kutmon, Amjad Ali, 2018, Front. Physiol..

MicroRNA pharmacogenomics based integrated model of miR-17-92 cluster in sorafenib resistant HCC cells reveals a strategy to forestall drug resistance

Ayesha Obaid, Amjad Ali, A. Naz, 2017, Scientific Reports.

Long non‐coding RNAs and their targets as potential biomarkers in breast cancer

R. Z. Paracha, Amjad Ali, J. Ahmad, 2021, IET systems biology.

MicroRNAs and their target mRNAs as potential biomarkers among smokers and non-smokers with lung adenocarcinoma.

R. Nawaz, Amjad Ali, Amnah Siddiqa, 2019, IET systems biology.

Identification of self-regulatory network motifs in reverse engineering gene regulatory networks using microarray gene expression data.

J. Ahmad, Sharifullah Khan, M. Khalid, 2019, IET systems biology.

Parallel Computation on Large-Scale DNA Sequences

Maozhen Li, Jamil Ahmad, Rehan Zafar Paracha, 2018, Applications of Intelligent Technologies in Healthcare.

Modeling and analysis of the impacts of jet lag on circadian rhythm and its role in tumor growth

Amjad Ali, Hufsah Ashraf, Azka Hassan, 2018, PeerJ.

3D Structure Determination and Validation of mTORC2 using Computational Modeling Techniques

Amnah Siddiqa, Jamil Ahmad, Rehan Zafar Paracha, 2019, 2019 19th International Conference on Computational Science and Its Applications (ICCSA).

System level modeling and analysis of TNF-α mediated sphingolipid signaling pathway in neurological disorders for the prediction of therapeutic targets

Zartasha Mustansar, R. Z. Paracha, J. Ahmad, 2022, Frontiers in Physiology.

MicroRNA pharmacogenomics based integrated model of miR-17-92 cluster in sorafenib resistant HCC cells reveals a strategy to forestall drug resistance

Ayesha Obaid, Amjad Ali, A. Naz, 2017, Scientific Reports.

Formal model of the interplay between TGFβ1 and MMP-9 and their dynamics in hepatocellular carcinoma.

Ayesha Obaid, Amjad Ali, A. Naz, 2019, Mathematical biosciences and engineering : MBE.

Modeling and analysis of innate immune responses induced by the host cells against hepatitis C virus infection.

J. Baumbach, R. Z. Paracha, Ayesha Obaid, 2015, Integrative biology : quantitative biosciences from nano to macro.

Identification of Circulating Biomarker Candidates for Hepatocellular Carcinoma (HCC): An Integrated Prioritization Approach

Ayesha Obaid, Amjad Ali, A. Naz, 2015, PloS one.

Deciphering the expression dynamics of ANGPTL8 associated regulatory network in insulin resistance using formal modelling approaches

Amjad Ali, J. Ahmad, Amnah Siddiqa, 2020, IET systems biology.

Identification of Key Genes and Pathways Involved in Compensatory Pancreatic Beta Cell Hyperplasia During Insulin Resistance

R. Z. Paracha, Amjad Ali, J. Ahmad, 2018, Advances in Intelligent Systems and Computing.

Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways.

Amjad Ali, Amnah Siddiqa, Elisa Cirillo, 2017, Genomics.

Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis

Samar H. K. Tareen, C. Evelo, M. Kutmon, 2018, Front. Physiol..

Model-based in silico analysis of the PI3K/Akt pathway: the elucidation of cross-talk between diabetes and breast cancer

Ayesha Obaid, Amjad Ali, A. Naz, 2018, PeerJ.

Model of the adaptive immune response system against HCV infection reveals potential immunomodulatory agents for combination therapy

Ayesha Obaid, Amjad Ali, A. Naz, 2018, Scientific Reports.

Insilico study of anti-carcinogenic lysyl oxidase-like 2 inhibitors

Jamil Ahmad, Amjad Ali, Rehan Zafar Paracha, 2014, Comput. Biol. Chem..

Petri Net-Based Model of Helicobacter pylori Mediated Disruption of Tight Junction Proteins in Stomach Lining during Gastric Carcinoma

Ayesha Obaid, Amjad Ali, A. Naz, 2017, Front. Microbiol..

Petri Net modelling approach for analysing the behaviour of Wnt/[inline-formula removed]-catenin and Wnt/Ca2+ signalling pathways in arrhythmogenic right ventricular cardiomyopathy.

F. Jalil, J. Ahmad, Nazia Azim, 2020, IET systems biology.

On the Use of Betweenness Centrality for Selection of Plausible Trajectories in Qualitative Biological Regulatory Networks

Jamil Ahmad, Amjad Ali, Muhammad Tariq Saeed, 2018, IWBBIO.

Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression

Aamir Shafi, Amjad Ali, Amnah Siddiqa, 2016, PeerJ.

A parallel approach for accelerated parameter identification of Gene Regulatory Networks

Jamil Ahmad, Tariq Saeed, T. Saeed, 2014, IWBBIO.

Computational modeling and analysis of the impacts of sleep deprivation on glucose stimulated insulin secretion

Jamil Ahmad, Amjad Ali, Hufsah Ashraf, 2019, Biosyst..

Petri Net modelling approach for analysing the behaviour of Wnt/ β -catenin and Wnt/Ca 2+ signalling pathways in arrhythmogenic right ventricular cardiomyopathy

Nazia Azim, Amnah Siddiqa, J. Ashraf, 2020 .

Analyzing the Behavior of Neuronal Pathways in Alzheimer's Disease Using Petri Net Modeling Approach

Jamil Ahmad, Amjad Ali, Zaheer-ul-Haq, 2018, Front. Neuroinform..

Structural characterization of ANGPTL8 (betatrophin) with its interacting partner lipoprotein lipase

Amnah Siddiqa, Jamil Ahmad, Amjad Ali, 2016, Comput. Biol. Chem..

Qualitative modelling and analysis of gene regulatory networks: application to the adaptation of Escherichia coli bacterium to carbon availability

Jérémie Bourdon, J. Ahmad, D. Eveillard, 2009 .

Pan-genomics of plant pathogens and its applications

Nosheen Fatima, J. Ahmad, Amnah Siddiqa, 2020 .

Modelling and Analysis of the Feeding Regimen Induced Entrainment of Hepatocyte Circadian Oscillators Using Petri Nets

Samar Hayat Khan Tareen, S. H. K. Tareen, Jamil Ahmad, 2015, PloS one.

Parametric linear hybrid automata for complex environmental systems modeling

Jamil Ahmad, Olivier Roux, Samar H. K. Tareen, 2015, Front. Environ. Sci..

Qualitative modeling and analysis of the indoleamine 2,3-dioxygenase regulatory network in homeostasis and disease

Jamil Ahmad, Amjad Ali, Hussnain Ahmed Janjua, 2014, 2014 11th International Conference on Fuzzy Systems and Knowledge Discovery (FSKD).

Discrete modelling of p53-Mdm2 feedback loop

Jamil Ahmad, Umar Khan Niazi, Syeda Uzma Ali, 2011, 2011 IEEE International Conference on Granular Computing.

On the modeling and analysis of the biological regulatory network of NF-$${\kappa }$$κB activation in HIV-1 infection

Jamil Ahmad, Amjad Ali, Shah Khusro, 2016, Complex Adapt. Syst. Model..

On the modeling and analysis of the biological regulatory network of NF ‐ κ B activation in HIV ‐ 1 infection

Samar H. K. Tareen, Amjad Ali, J. Ahmad, 2016 .

Invariance Kernel of Biological Regulatory Networks

Jamil Ahmad, Olivier F. Roux, J. Ahmad, 2008, 2008 IEEE International Conference on Bioinformatics and Biomedicine.

Structural modeling and analysis of dengue-mediated inhibition of interferon signaling pathway.

V. Azevedo, R. Z. Paracha, Amjad Ali, 2015, Genetics and molecular research : GMR.

On the modelling and analysis of the regulatory network of dengue virus pathogenesis and clearance

Jamil Ahmad, Amjad Ali, Rehan Zafar Paracha, 2014, Comput. Biol. Chem..

Petri Net and Probabilistic Model Checking Based Approach for the Modelling, Simulation and Verification of Internet Worm Propagation

J. Ahmad, Misbah Razzaq, Jamil Ahmad, 2015, PloS one.

Multivariate Covariance using Principal Component Analysis for Reconstruction of Bidirected Gene Regulatory Networks

Jamil Ahmad, Sharifullah Khan, Mehrosh Khalid, 2017, 2017 International Conference on Frontiers of Information Technology (FIT).

Modeling and analysis of the signaling crosstalk of PI3K, AMPK and MAPK with Timed Hybrid Petri Nets approach

Jamil Ahmad, Amnah Siddiqa, Rehan Zafar Paracha, 2017, 2017 17th International Conference on Computational Science and Its Applications (ICCSA).

VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology

Jamil Ahmad, Muhammad Ahsan, Amjad Ali, 2017, BMC Bioinformatics.

Petri Net modelling approach for analysing the behaviour of Wnt/ β -catenin and Wnt/Ca 2+ signalling pathways in arrhythmogenic right ventricular cardiomyopathy

J. Ahmad, Nazia Azim, Amnah Siddiqa, 2020 .