Hongzhe Li

发表

Threshold Gradient Descent Method for Censored Data Regression with Applications in Pharmacogenomics

Jiang Gui, Hongzhe Li, Hongzhe Li, 2004, Pacific Symposium on Biocomputing.

LEARNING LOCAL DIRECTED ACYCLIC GRAPHS BASED ON MULTIVARIATE TIME SERIES DATA.

Hongzhe Li, Wanlu Deng, Zhi Geng, 2013, The annals of applied statistics.

Hidden Markov Random Field Models for Network-Based Analysis of Genomic Data

Hongzhe Li, 2011, Handbook of Statistical Bioinformatics.

Large Covariance Estimation for Compositional Data Via Composition-Adjusted Thresholding

Wei Lin, Hongzhe Li, Yuanpei Cao, 2016, Journal of the American Statistical Association.

A Sparse Structured Shrinkage Estimator for Nonparametric Varying-Coefficient Model With an Application in Genomics

Hongzhe Li, Z John Daye, Jichun Xie, 2012, Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America.

The design of cable-climbing robot

Hongzhe Li, Zhihong Wang, Guangping Hao, 2011, Proceedings of 2011 International Conference on Electronic & Mechanical Engineering and Information Technology.

Network-Based Empirical Bayes Methods for Linear Models with Applications to Genomic Data

Hongzhe Li, Zhi Wei, Caiyan Li, 2010, Journal of biopharmaceutical statistics.

Integrative analysis of genetical genomics data incorporating network structures

Xu Liu, Hongzhe Li, Yuehua Cui, 2019, Biometrics.

Co-expression networks: graph properties and topological comparisons

Hongzhe Li, Ramon Xulvi-Brunet, Hongzhe Li, 2010, Bioinform..

Detecting Violations of Security Requirements for Vulnerability Discovery in Source Code

Heejo Lee, Hongzhe Li, Jaesang Oh, 2016, IEICE Trans. Inf. Syst..

Optimal Sparse Segment Identification With Application in Copy Number Variation Analysis

Hongzhe Li, X Jessie Jeng, T Tony Cai, 2010, Journal of the American Statistical Association.

An Integrated Gaussian Graphical Model to evaluate the impact of exposures on metabolic networks

Hongzhe Li, Jiang Gui, Margaret R Karagas, 2019, Comput. Biol. Medicine.

A two-part mixed-effects model for analyzing longitudinal microbiome compositional data

Hongzhe Li, Eric Z. Chen, Eric Z. Chen, 2016, Bioinform..

Compositional Mediation Analysis for Microbiome Studies

Hongzhe Li, Michael B. Sohn, Hongzhe Li, 2017, bioRxiv.

Statistical methods for analysis of time course gene expression data.

Hongzhe Li, Fangxin Hong, Yihui Luan, 2002, Frontiers in bioscience : a journal and virtual library.

Inertial space tracking for free-floating space robot manipulator using RBF-NN based compensating control algorithm

Hongzhe Li, Xiaoteng Tang, Cheng-kun Tang, 2011, IEEE International Conference on Robotics and Biomimetics.

Kernel Cox Regression Models for Linking Gene Expression Profiles to Censored Survival Data

Hongzhe Li, Yihui Luan, Hongzhe Li, 2002, Pacific Symposium on Biocomputing.

Dimension reduction methods for microarrays with application to censored survival data

Hongzhe Li, Lexin Li, Hongzhe Li, 2004, Bioinform..

Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data

Hongzhe Li, Yihui Luan, Hongzhe Li, 2004, Bioinform..

Regularization Methods for High-Dimensional Instrumental Variables Regression With an Application to Genetical Genomics

Hongzhe Li, Wei Lin, Rui Feng, 2013, Journal of the American Statistical Association.

Graphical model selection and estimation for high dimensional tensor data

Hongzhe Li, Xing Wang, Jianxin Yin, 2014, J. Multivar. Anal..

A SPARSE CONDITIONAL GAUSSIAN GRAPHICAL MODEL FOR ANALYSIS OF GENETICAL GENOMICS DATA.

Hongzhe Li, Jianxin Yin, Hongzhe Li, 2011, The annals of applied statistics.

Group SCAD regression analysis for microarray time course gene expression data

Hongzhe Li, Lifeng Wang, Guang Chen, 2007, Bioinform..

Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA

Hongzhe Li, Robert Gross, Kyle Bittinger, 2015, Bioinform..

Automated Source Code Instrumentation for Verifying Potential Vulnerabilities

Heejo Lee, Hongzhe Li, Hakjoo Oh, 2016, SEC.

A general framework for association analysis of microbial communities on a taxonomic tree

Hongzhe Li, Guanhua Chen, Alexander V. Alekseyenko, 2016, Bioinform..

Boosting proportional hazards models using smoothing splines, with applications to high-dimensional microarray data

Hongzhe Li, Yihui Luan, Hongzhe Li, 2005, Bioinform..

Model selection and estimation in the matrix normal graphical model

Hongzhe Li, Jianxin Yin, Hongzhe Li, 2012, J. Multivar. Anal..

VARIABLE SELECTION FOR SPARSE DIRICHLET-MULTINOMIAL REGRESSION WITH AN APPLICATION TO MICROBIOME DATA ANALYSIS.

Hongzhe Li, Jun Chen, Hongzhe Li, 2013, The annals of applied statistics.

Adjusting for high-dimensional covariates in sparse precision matrix estimation by ℓ1-penalization

Hongzhe Li, Jianxin Yin, Hongzhe Li, 2013, J. Multivar. Anal..

CLORIFI: software vulnerability discovery using code clone verification

Heejo Lee, Hongzhe Li, Jonghoon Kwon, 2016, Concurr. Comput. Pract. Exp..

Conditional Regression Based on a Multivariate Zero-Inflated Logistic-Normal Model for Microbiome Relative Abundance Data

Hongzhe Li, Juliette C. Madan, Margaret R. Karagas, 2017, Statistics in Biosciences.

A backstepping robust control method for free-floating space robot system with dual-arms

Hongzhe Li, Xiaoteng Tang, Cheng-kun Tang, 2011, 2011 IEEE International Conference on Robotics and Biomimetics.

glmgraph: an R package for variable selection and predictive modeling of structured genomic data

Hongzhe Li, Jun Chen, Li Chen, 2015, Bioinform..

A Markov random field model for network-based analysis of genomic data

Hongzhe Li, Zhi Wei, Hongzhe Li, 2007, Bioinform..

In Response to Comment on "Network-constrained regularization and variable selection for analysis of genomic data"

Hongzhe Li, Caiyan Li, 2008, Bioinform..

Clustering of time-course gene expression data using a mixed-effects model with B-splines

Hongzhe Li, Yihui Luan, Hongzhe Li, 2003, Bioinform..

Ascertainment-Adjusted Maximum Likelihood Estimation for the Additive Genetic Gamma Frailty Model

Hongzhe Li, Wanlong Sun, 2004, Lifetime data analysis.

A Hierarchical Bayesian Model for Estimating and Inferring Differential Isoform Expression for Multi-sample RNA-Seq Data

Hongzhe Li, Mingyao Li, Saran Vardhanabhuti, 2011, Statistics in Biosciences.

Optimal False Discovery Rate Control for Dependent Data.

Hongzhe Li, Jichun Xie, T Tony Cai, 2011, Statistics and its interface.

Penalized Cox regression analysis in the high-dimensional and low-sample size settings, with applications to microarray gene expression data

Jiang Gui, Hongzhe Li, Hongzhe Li, 2005, Bioinform..

Optimal detection of weak positive dependence between two mixture distributions

Hongzhe Li, Sihai Dave Zhao, T. Tony Cai, 2014, 1412.2149.

Joint Estimation of Multiple High-dimensional Precision Matrices.

Hongzhe Li, Jichun Xie, Weidong Liu, 2016, Statistica Sinica.

High‐Dimensional Heteroscedastic Regression with an Application to eQTL Data Analysis

Hongzhe Li, Z John Daye, Jinbo Chen, 2012, Biometrics.

More powerful genetic association testing via a new statistical framework for integrative genomics

Hongzhe Li, T Tony Cai, Sihai D Zhao, 2014, Biometrics.

In Response to Comment on "Network-constrained regularization and variable selection for analysis of genomic data"

Hongzhe Li, Caiyan Li, Hongzhe Li, 2008, Bioinform..

Associating microbiome composition with environmental covariates using generalized UniFrac distances

Hongzhe Li, Jun Chen, Kyle Bittinger, 2012, Bioinform..

Medication class enrichment analysis: a novel algorithm to analyze multiple pharmacologic exposures simultaneously using electronic health record data

Hongzhe Li, Jason H. Moore, James D. Lewis, 2018, J. Am. Medical Informatics Assoc..

Partial Cox regression analysis for high-dimensional microarray gene expression data

Jiang Gui, Hongzhe Li, Hongzhe Li, 2004, ISMB/ECCB.

A Bayesian Approach for Graph-constrained Estimation for High-dimensional Regression.

Hongzhe Li, Hokeun Sun, 2010, International journal of systems and synthetic biology.

A change-point model for identifying 3′UTR switching by next-generation RNA sequencing

Hongzhe Li, Zhi Wei, Wei Wang, 2014, Bioinform..

Optimal Structured Principal Subspace Estimation: Metric Entropy and Minimax Rates

Hongzhe Li, T. Tony Cai, Rong Ma, 2021, J. Mach. Learn. Res..

Optimal Permutation Recovery in Permuted Monotone Matrix Model

Hongzhe Li, Rong Ma, T. Tony Cai, 2019, Journal of the American Statistical Association.

Bayesian Balance-Regression in Microbiome Studies Using Stochastic Search

Hongzhe Li, Lu Huang, 2021, Advances in Compositional Data Analysis.

Hypothesis testing for phylogenetic composition: a minimum-cost flow perspective.

Hongzhe Li, Shulei Wang, T Tony Cai, 2020, Biometrika.

MiRKAT: kernel machine regression-based global association tests for the microbiome

Xiang Zhan, Hongzhe Li, Jun Chen, 2020, Bioinform..

A compositional mediation model for a binary outcome: Application to microbiome studies

Hongzhe Li, Michael B. Sohn, Jiarui Lu, 2021, Bioinform..

Estimation of genetic correlation with summary association statistics

Hongzhe Li, Jianqiao Wang, 2021 .

Truncated Rank-Based Tests for Two-Part Models with Excessive Zeros and Applications to Microbiome Data

Hongzhe Li, Wanjie Wang, Eric Z. Chen, 2021 .

Semi-Supervised Statistical Inference for High-Dimensional Linear Regression with Blockwise Missing Data

Hongzhe Li, Rong Ma, Fei Xue, 2021, 2106.03344.

A Unified Approach to Robust Inference for Genetic Covariance

Hongzhe Li, Jianqiao Wang, Sai Li, 2021, 2106.04106.

Global and Simultaneous Hypothesis Testing for High-Dimensional Logistic Regression Models

Hongzhe Li, Rong Ma, T. Tony Cai, 2018, Journal of the American Statistical Association.

IFAA: Robust Association Identification and Inference for Absolute Abundance in Microbiome Analyses

Hongzhe Li, Margaret R. Karagas, Juliette C. Madan, 2019, Journal of the American Statistical Association.

Multi-sample estimation of centered log-ratio matrix in microbiome studies

Hongzhe Li, Yuanpei Cao, Yezheng Li, 2021, 2106.08360.

Inference of Microbial Interactions Using Copula Models with Mixture Margins

Hongzhe Li, Rebecca A. Deek, Hongzhe Li, 2021, 2111.02344.

Optimal Estimation of Genetic Relatedness in High-Dimensional Linear Models

Hongzhe Li, T. Tony Cai, Zijian Guo, 2018, Journal of the American Statistical Association.

Network-based analysis of multivariate gene expression data.

Hongzhe Li, Hongzhe Li, E. Rappaport, 2013, Methods in molecular biology.

Disordered Microbial Communities In The Upper Respiratory Tract Of Cigarette Smokers

Hongzhe Li, Kyle Bittinger, Frederic D. Bushman, 2011, ATS 2011.

Multivariate survival models induced by genetic frailties, with application to linkage analysis.

Hongzhe Li, Hongzhe Li, Xiaoyun Zhong, 2002, Biostatistics.

A Gaussian copula approach for the analysis of secondary phenotypes in case-control genetic association studies.

Hongzhe Li, Jing He, Mingyao Li, 2012, Biostatistics.

Compositional mediation analysis for microbiome studies

Hongzhe Li, Michael B. Sohn, 2019, The Annals of Applied Statistics.

Simultaneous Discovery of Rare and Common Segment Variants.

Hongzhe Li, X Jessie Jeng, T Tony Cai, 2013, Biometrika.

A hidden Markov modeling approach for admixture mapping based on case‐control data

Hongzhe Li, Hongzhe Li, M. Seldin, 2004, Genetic epidemiology.

Kernel Methods for Regression Analysis of Microbiome Compositional Data

Hongzhe Li, Jun Chen, Hongzhe Li, 2013 .

Sample size and power analysis for sparse signal recovery in genome-wide association studies.

Hongzhe Li, Jichun Xie, T Tony Cai, 2011, Biometrika.

Semiparametric estimation of major gene effects for age of onset

Hongzhe Li, Ellen M. Wijsman, Elizabeth A. Thompson, 1998 .

Group additive regression models for genomic data analysis.

Hongzhe Li, Yihui Luan, Hongzhe Li, 2008, Biostatistics.

Two‐sample tests of high‐dimensional means for compositional data

Hongzhe Li, Yuanpei Cao, Wei Lin, 2018 .

Nonparametric pathway-based regression models for analysis of genomic data.

Hongzhe Li, Zhi Wei, Hongzhe Li, 2007, Biostatistics.

Deconstructing Sociability, An Autism‐Relevant Phenotype, in Mouse Models

Hongzhe Li, Hongzhe Li, E. Brodkin, 2011, Anatomical record.

A Logistic Normal Multinomial Regression Model for Microbiome Compositional Data Analysis

Hongzhe Li, Jun Chen, Wing Kam Fung, 2013, Biometrics.

Ethnic-difference markers for use in mapping by admixture linkage disequilibrium.

Hongzhe Li, Robert L Hanson, J. Weber, 2002, American journal of human genetics.

Robust Gaussian Graphical Modeling Via l1 Penalization

Hongzhe Li, Hokeun Sun, Hongzhe Li, 2012, Biometrics.

An additive genetic gamma frailty model for two-locus linkage analysis using sibship age of onset data

Hongzhe Li, Hongzhe Li, Xiaoyun Zhong, 2002, Statistical applications in genetics and molecular biology.

A penalized likelihood approach for bivariate conditional normal models for dynamic co-expression analysis.

Hongzhe Li, Jun Chen, Jichun Xie, 2011, Biometrics.

Examination of ancestry and ethnic affiliation using highly informative diallelic DNA markers: application to diverse and admixed populations and implications for clinical epidemiology and forensic medicine

Hongzhe Li, Gabriel Silva, Michael F. Seldin, 2005, Human Genetics.

Functional Empirical Bayes Methods for Identifying Genes with Different Time-course Expression Profiles

Hongzhe Li, Fangxin Hong, 2004 .

Generalized linear models with linear constraints for microbiome compositional data

Hongzhe Li, Jiarui Lu, Pixu Shi, 2018, Biometrics.

A powerful test for multiple rare variants association studies that incorporates sequencing qualities

Hongzhe Li, Zhi Wei, Hongzhe Li, 2012, Nucleic acids research.

A functional genomic approach identifies FAL1 as an oncogenic long noncoding RNA that associates with BMI1 and represses p21 expression in cancer.

Hongzhe Li, Yiling Lu, Joel Greshock, 2014, Cancer cell.

MATCHCLIP: locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads

Hongzhe Li, Dwight Stambolian, Mario Pirastu, 2013, Front. Genet..

Transfer learning for high‐dimensional linear regression: Prediction, estimation and minimax optimality

Hongzhe Li, T. Tony Cai, Sai Li, 2020, Journal of the Royal Statistical Society. Series B, Statistical methodology.

Sparse Simultaneous Signal Detection for Identifying Genetically Controlled Disease Genes

Hongzhe Li, Sihai Dave Zhao, Thomas P Cappola, 2017, Journal of the American Statistical Association.

Genetic sharing and heritability of paediatric age of onset autoimmune diseases

Hongzhe Li, Constantin Polychronakos, Yiran Guo, 2015, Nature Communications.

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

Hongzhe Li, Jun Chen, Frederic D. Bushman, 2013, PloS one.

Testing in Microbiome-Profiling Studies with MiRKAT, the Microbiome Regression-Based Kernel Association Test.

Hongzhe Li, Michael P Epstein, Michael C Wu, 2015, American journal of human genetics.

Covariate-Adjusted Precision Matrix Estimation with an Application in Genetical Genomics.

Hongzhe Li, Weidong Liu, Jichun Xie, 2013, Biometrika.

Incorporation of Genetic Pathway Information into Analysis of Multivariate Gene Expression Data

Hongzhe Li, Eric F. Rappaport, Zhi Wei, 2008 .

Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers

Hongzhe Li, Kyle Bittinger, Jun Chen, 2010, PloS one.