Chengwei Luo

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Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes

E. Voit, K. Konstantinidis, C. Luo, 2020, Scientific Reports.

The treatment-naive microbiome in new-onset Crohn's disease.

Se Jin Song, M. Yassour, C. Huttenhower, 2014, Cell host & microbe.

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

Konstantinos T. Konstantinidis, K. Konstantinidis, C. Luo, 2014, Nucleic acids research.

Antigen discovery and specification of immunodominance hierarchies for MHCII-restricted epitopes

Jennifer G. Abelin, Daniel J. O'Connell, M. Yassour, 2018, Nature Medicine.

Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

James R. Cole, Kai Xue, Ye Deng, 2016 .

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics

K. Konstantinidis, C. Luo, D. Tsementzi, 2014, PloS one.

Metagenomics of Two Severe Foodborne Outbreaks Provides Diagnostic Signatures and Signs of Coinfection Not Attainable by Traditional Methods

Cheryl L. Tarr, Konstantinos T. Konstantinidis, K. Konstantinidis, 2016, Applied and Environmental Microbiology.

ConStrains identifies microbial strains in metagenomic datasets

Rob Knight, Dirk Gevers, Mikael Knip, 2015, Nature Biotechnology.

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

Konstantinos T. Konstantinidis, K. Konstantinidis, J. Tiedje, 2011, Proceedings of the National Academy of Sciences.

Individual genome assembly from complex community short-read metagenomic datasets

N. Kyrpides, K. Konstantinidis, C. Luo, 2011, The ISME Journal.

Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem

Eric R. Johnston, Yiqi Luo, Zhili He, 2016, Front. Microbiol..

Paneth cell defects in Crohn's disease patients promote dysbiosis.

C. Huttenhower, R. Xavier, D. McGovern, 2016, JCI insight.

Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation.

Eric A. Franzosa, Daniel J. O'Connell, C. Huttenhower, 2017, Cell host & microbe.

Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation

J. Segre, M. Hattori, D. Gevers, 2017, Science.

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

N. Kyrpides, K. Konstantinidis, T. Read, 2012, PloS one.

A user's guide to quantitative and comparative analysis of metagenomic datasets.

Luis M Rodriguez-R, Konstantinos T Konstantinidis, K. Konstantinidis, 2013, Methods in enzymology.

Metagenomic Insights into the Evolution, Function, and Complexity of the Planktonic Microbial Community of Lake Lanier, a Temperate Freshwater Ecosystem

Konstantinos T. Konstantinidis, K. Konstantinidis, C. Luo, 2011, Applied and Environmental Microbiology.

Gut Microbiome Function Predicts Response to Anti-integrin Biologic Therapy in Inflammatory Bowel Diseases.

Ashwin N Ananthakrishnan, R. Xavier, A. Ananthakrishnan, 2017, Cell host & microbe.

Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics

Jizhong Zhou, K. Konstantinidis, J. Tiedje, 2013, Applied and Environmental Microbiology.

Development of algorithms for metagenomics and applications to the study of evolutionary processes that maintain microbial biodiversity

C. Luo, Chengwei Luo, 2012 .

Iterative Subtractive Binning of Freshwater Chronoseries Metagenomes Identifies over 400 Novel Species and their Ecologic Preferences.

K. Konstantinidis, C. Luo, D. Tsementzi, 2020, Environmental microbiology.

Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes

E. Voit, K. Konstantinidis, C. Luo, 2020, Scientific Reports.

Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea.

K. Konstantinidis, C. Luo, M. Höfle, 2014, Environmental microbiology.

Title Stability , genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea Permalink

K. Konstantinidis, C. Luo, M. Höfle, 2014 .

Genome reannotation of Escherichia coli CFT073 with new insights into virulence

Huaiqiu Zhu, Gang-Qing Hu, Huaiqiu Zhu, 2009, BMC Genomics.

Profiling novel lateral gene transfer events in the human microbiome

C. Huttenhower, E. Franzosa, R. Beiko, 2023, bioRxiv.

Iterative Subtractive Binning of Freshwater Chronoseries Metagenomes Identifies of over Four Hundred Novel Species and their Ecologic Preferences

K. Konstantinidis, D. Tsementzi, Luis M. Rodriguez-R, 2019 .

Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections

Hodon Ryu, Konstantinos T. Konstantinidis, K. Konstantinidis, 2016, Applied and Environmental Microbiology.

Antigen discovery and specification of immunodominance hierarchies for MHCII-restricted epitopes

Steven A Carr, Moran Yassour, Jennifer G Abelin, 2018, Nature Medicine.

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K. Konstantinidis, J. Tiedje, M. Höfle, 2014 .

The Bacterial Symbionts of Closely Related Hydrothermal Vent Snails With Distinct Geochemical Habitats Show Broad Similarity in Chemoautotrophic Gene Content

R. Beinart, P. Girguis, K. Konstantinidis, 2019, Front. Microbiol..

Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities.

K. Konstantinidis, C. Luo, D. Tsementzi, 2014, Environmental microbiology reports.

Photosynthetic characteristics, soil nutrients, and their interspecific competitions in an apple–soybean alley cropping system subjected to different drip fertilizer regimes on the Loess Plateau, China

Chaonan Li, C. Luo, Ruoshui Wang, 2023, Agricultural Water Management.

K. Konstantinidis, Chengwei Luo, 2011, Proceedings of the National Academy of Sciences.